RNA id: XM_021589537.2


Basic Information

Item Value
RNA id XM_021589537.2
length 3500
RNA type mRNA
GC content 0.41
exon number 11
gene id nmnat2
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23042538 ~ 23055346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGTATCCTGCGAGGAGACTTGGACACTGCCGCATCCAAATTAACCTCGCCTCTCTGCGGTCGCTAACAGCAAAACAAAGAAGAACAAATCGGTAGTTGCAGAAAAAGAGACTCATATCCAATCATATCATGACGGACAACACTAAAACGCACGTTATTTTGCTGTCATGTGGAAGTTTTAACCCCATCACTAAAGGACACATTCATATGTTTGAAAAAGCCAGAGAATACCTGCACAAAACAGGGAAGTTCATTGTGATTGGGGGTATCATTTCACCTGTACATGACTCCTATGGCAAACCGGGCCTCGTCCCCAGCAGACATCGTCTCACCATGTGTCAACTGGCAGTCCAGTCATCCGACTGGATCAGAGTGGATCCCTGGGAGTGCTACCAGGACACATGGCAGACTACATGCAGCGTGCTGGAGCATCATCGTGACCTCATGAAGAGAGTCACAGGGTGCATTCTGTCCAATGTGAACACACCGTCTACAACTCCAGTGATCGGCCAACCACAGAATGAGACTCAGACTGCCATCTatcagaaccacaacacaatgaaCAACAAGCCCACTGCCATTAAGCTTTGGGGGAAGATGAGTGAGAGCTTGGGCAAAATTTGCTGTGTTCGCCCCCACATTGATCGTTTTACCTTTGTGGATGAAAATGCCAACCTTGGCCCTGCAATGCGATATGAGGAAATTGAGTTGCGCATCTTGCTTCTGTGTGGCAGTGATCTCCTGGAGTCATTCTGCATCCCTGGCTTATGGAAAGACAGTGATATGGAGGTGATTGTGGGAGACTTTGGGATTGTTGTTGTGCCTCGGGATGGAGTTGATACAGAGAGGATAATGAACCATTCCTCTGTGCTGCGCAAGAACAAGGATAACATCACAGTAGTAAAAGATGATGCCAACCACCCTATGTCCATTGTCAGCTCAACCAAGAGCAGACTGGCCCTGCAGCACGGGGACGGTCATGTGGTGGACTACCTGAACCAGACAGTCATCGACTACATCCTGCAGAGTCAGCTCTACATCAATGCCTCTGGATAGAAACTACTGCTCCGGCCTACTGTCAaattgtccctgtctgtctctcatgtAAAATGTATACTCCTCTTGAGCTACTGCTTTTCCATTCGAAGGAGCATTAGATATGCATTTCCCTTCTTACTGTATCATAATGACTCATCGGACCTGTGGATGTACTGTACAGCGAGGTGCTTAAGAGCTGTGTGTACAGTGGACCACCTTCACAACTGACTTTGTGTAGGCTGCATGGGATAGTGTTtctgtctgtcccaaatggcaccctaatccctatatagtgcactacttttaaccagggcctatagggctctggtaaaaaataGTGCACTTTTTATtcaatatggtgccatttgggatgcaaccttgGTGTCATGAAGAGAGGGTGCAGAGATTGTTACCTGATGAATGTTGACCTTTGCTGCTTGATTTAAATCTGTCGATTCTTAGACTGCATGCTTAGaacgttttttttgttttggcATGAGTACTTATTCACTTCGTAGATATATGTTGTGAAAGTGTTTGCAAAAAGACAAACATAGTGGGTACCCACCTCTCACTTCATTTTCTATTCACTATAATTCTACTGTATGTACAGaagtatctgtattgatgtatCTGTGATTGCATATCAATGCCTAAATGTTTTGTCTTCAGTGGGCATTCGTGCAAAATGTAGATTTGTTTGCACATAAGACAATGATTTGTGCATTGATTTATTTTTGTGTGCAAAGGATTTTGCACATTTCTCCTGCTTGTCACTAAGCAAATTACCGCGACTCCCAAAGCAAATGCAATGAACCTCTTTCTTACTATGTGCTATGTAGCTAGTTACTTGAGATTCTTACAAAAATGTGTATAGTGGAAAAAACAACAGCACAAACTACAGAAGTGCATTCCATGTGCCTGGGGATGAATTCACAGATATAAGTCTCCCGCTCCCTTGCACTCAACACTGTCATAATATTATCAACCTGATATAAAATGAGCTCTAATGTTGTTCTGCAAAGGAAGTGGGGACATAGCCTTTGATCAATAGTTTCTTAAGGAAGCTTCTCATGCTCAGTGCCAGGACTCTTTAGACAGTTCAGTTTAATGGGCATTGAGTATAACCATTAATTTGTGCAGTAATGATTTCACAGGGTAAtagggtgtatacagtattggtGTATACAGGACATTGGTTGCACCTTAGTTGGAGAGTACGGGCtcttggtaatggctggagcggaataagtggaatggtattaaatacatcaaacacatggtttccatgccaTTCCTTTCGCTCCGTTCCTGCAATTATGAGCTGtcgtcccctcagcagcctcctgtggtgcaCATTGTGCCCAATTGGTCAATGCAAAATAATGACGATTATTTGGTTTAATTAGTGTCTAAATGTTACCAAAGCAACTTGCATTCATATATAGCTTTACAAGTGTCAATTTGGCTAAGAATATTAGGTTATTCAATCTTAATATCAGATGAAGCTAAATACATTCCACTGCTTCCTGCAATCTCACAGTTCATCATTTATAAGAAATGGACACACAAGTGCTACTAGTTGTCAATATTGTAGCGTTGTATAAGCCTGGCAAGACTATCAATAGTACACTGTGTGTAAGATGTTCTAGACAAACAATATTGCTTCTTTATGTGTCATCCGAGTGTAATGAACAAACTGTACTGGGTCCAATATCCCTTCAAGCAGATGGTCTTTATACATGCATCCCTAGAGTCTTTCTATCAAATACACGACATCAGTTATTTGGTATTCTTTAAAGACTGGTTTAGATAAACAAGATGTGGAAAATCTGATAAAATAAGCATCGTCGTGGTCCTAGTAATAGGGCAATGTTTAGTATAATAGTCTCAGCCCACTGGGCAAAGATATTTCAACATCTAGTTTGGATTtaaatttggttgagttgtcaactaacgtgaattcaacacgaaatgtaaaaaaaatctaaatctccATGTCATTAAATTTAGGtgaaaagttgggtgaaaaaaatactaaattccAATACGTTGATGACTTTCTGCAAATCCAATAttttttccacgttgattcaacgtcatcacattgattttgtgttgttgaactgatgtggaAACAACCTTGATTAAACCAGTGTTTGCCCAGTGGGAGAGAAGGTCTCATAGAACCTGAGGAGATTGTATGAGTAGATGATTTATAGATATAATATGAAGAGATGTTTGATTTATATTTGATTCTGTTCATTGAATTATTTGGTAAGGAGTCctgaaaacatacattttttggaATCCTATGTAAAATGAGCTACAATTCCACTTTCAGATCTGGGTTGGAAATGATTTGTATTTTGGCATCTTAGACTgtggactgactggctgacacAATATAACATCCTCAGTCTCTCAATACCTCCATAATAAACCAAGTGTGTAACAATA

Function

GO:

id name namespace
GO:0009435 NAD biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0004515 nicotinate-nucleotide adenylyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K06210 NMNAT; nicotinamide mononucleotide adenylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2423362 lncRNA downstream 1211 23036810 ~ 23041327 (-) True G2119398
TU2423358 lncRNA downstream 3444 23033771 ~ 23039094 (-) True G2119395
TU2423355 lncRNA downstream 4127 23033230 ~ 23038411 (-) True G2119394
TU2423354 lncRNA downstream 4289 23033053 ~ 23038249 (-) True G2119393
TU2423183 lncRNA downstream 134903 22905184 ~ 22907635 (-) True G2119237
TU2423402 lncRNA upstream 36977 23092323 ~ 23174530 (-) True G2119432
TU2423553 lncRNA upstream 262232 23317578 ~ 23319702 (-) False LOC110508185
TU2423703 lncRNA upstream 556676 23612022 ~ 23613195 (-) True G2119699
TU2423778 lncRNA upstream 672767 23728113 ~ 23732967 (-) True G2119766
TU2423808 lncRNA upstream 725607 23780953 ~ 23781185 (-) True G2119795
XM_021589533.2 mRNA downstream 102973 22934260 ~ 22939565 (-) True LOC110508754
XM_021589528.2 mRNA downstream 213897 22822072 ~ 22828641 (-) True LOC110508750
XM_036967134.1 mRNA downstream 225795 22795639 ~ 22816743 (-) True dars2
XM_021589527.2 mRNA downstream 225798 22795639 ~ 22816740 (-) False dars2
XM_036965986.1 mRNA downstream 515457 22288165 ~ 22527081 (-) True astn1
XM_036966220.1 mRNA upstream 48725 23104071 ~ 23118255 (-) False LOC110508760
XM_021589542.2 mRNA upstream 48725 23104071 ~ 23118323 (-) True LOC110508760
XM_021589545.2 mRNA upstream 88873 23144219 ~ 23154829 (-) True LOC110508762
XM_036966426.1 mRNA upstream 104810 23160156 ~ 23183512 (-) False LOC110508763
XM_036966427.1 mRNA upstream 104810 23160156 ~ 23183512 (-) False LOC110508763
TU2422040 other downstream 434732 22594533 ~ 22607806 (-) True G2118200
TU2421095 other downstream 1094280 21942981 ~ 21948258 (-) False LOC110508740
TU2423555 other upstream 269655 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 1609528 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 1675328 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 2088716 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 2142902 25198248 ~ 25274626 (-) True G2121457

Expression Profile