RNA id: XM_021589545.2



Basic Information


Item Value
RNA id XM_021589545.2
length 3520
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110508762
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23144219 ~ 23154829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTCGAACACGCCCAACATCTGACATCAAGCACAAGGCGTCGGCTCTTCCAATTCAAGAACAATGCAGCTGAATGGCATGTCGCCTCCAACGGCCAATCAGAGACGTTTATAGTGGAGAGTGGCCGCTTCGACAACACATCCACAAAGGCAAAATTCAGTAAAAATGTATATATCTTAAAAATATGAAAACAAAAATtatttttggtcttcatttaaagttaacagtgtggttaatgCTAGCtctaaaatcagattttaagaagatacattttaaaaataggCACGGTTTATGACTGTGTGGTTGCGTTAACTACTGACGACCCTGCTCACCAAGGAAAAAAAGTCCTGTTTGTGGCTTGCCGAATACCAGATTTTTGTAATGgaataacatgtaaaaaaaagcTTCTGGCTACATGTTATTTCACCCGTCGGATTTGCTTCATGCTGTCTTTCTCGGACGCTGTGTGCACATTGTGCTGGTCTGAAGAGCCCTTTATTTGAAGtcgaTTCAGTCTTGCATGGGTCTGTAAGAGGCAGCATCATGAGTGGGGAGCCAGATGCTTTGGCTGTGGTGAACCAGCTTAGGGATCTTGCTGCAGATCCCATGAACAGAAGAGCCATCGTTCAGGACCAAGGTTGCTTACCGGGACTCATCATTTTTCTGGACCACCCCAACCCCCAGGTTGTCTACTCCGCACTCCTGGCTGTGCGCTACCTCGCAGAATGCCGTCAAAACAAGGAGAAAATGAGGGGAGAGCTTGGGATGATGTTAAGTCTTCAGAATGTCATGCAAAAGACAACCACCCCGGGAGAGACCAAACTGCTGGCCTCAGAAATCTATGAACTCCTCCAGGCCTCTAACAGTGAGGATGCATACAAGTCCAAGGAGCCCTCCTGCAGACGTAAGCCCCAGTTCTTCCTGGGCTCCACCAACAAGCAGGCCAAAACAGTGGTCCTCCACATAGATGGCCTGGATGACTCTAGCCGGAGGAGCCTTTGTGAAGAGGCCCTATTGAAGATCCGAGGTGTCATCAGCTTCACATTCCAGATGGCCGTTAAGAGGTGTATCATCAGAATCCGCTCAGACCTGAAGGCAGAGGCTCTGGGTTCTGCCATCGCATCAACTGAAGTAATGAAAGCTCAACAGGTGGTCAGGGGAGAGGATGGAAATGAGGTAATCATCCCATTCCCAGAGGATGGTTCGGTAGCAGTGGAGCAGAATGTGAATCTTCCAGACTATCTTCCAGAGGAGGAGAGCCCGTCCCAGGAGCCAGACAAGGCTGTGACCAGCGTGGGCACAGGGCAGGACGGAGCAGGCTGGCTAGGCACTGCTGCTAACTTTCTGTCCCGCTCTTTCTACTGGTGACTCCCAGACCACTTACACCTCTTCAGACAGAATCAGGCTCCCAGCTGCCAAAGAGCTGGACTGCCAAAGGCAATGTGTAACAACAAACGATTCCAACGGTATGCagtacacacatgcacgcacccaCAATCTTACACACACTCCCACCTGGCACCATACAGAATCACCAAGCCATTGAGGGAGAGGACCGGCTTCCGGAATGGATTCTTATTTCTTATCTTTTGGGTTTTGATTGAGAGCTAGACTATTCTTTCTGCAAATGTAAATGGGTCCATGTATTTGAAAACCAAAATGTCTTATTGTGAGGAGCTTTATTGTGGCACCATTTTAATAGGAATTGATCCATCAGAAACGTTGCCACAAAATGAAGTTCCTGCAGTTAGAATGATTTGAATGATCTGAAATCATTCTTGGTCTTTTTGACCGACCTTTGAACAATAACAGACCTCCTTCCCTATTTTCTCAATGGGTATTGTAGAATATGCAGTAATCAGCATGTGTCCAGTTATGGTGCCTTTTGTTTCATTATGTTTACATGGATACCCTTGCATGACTGACTGTCTGCTTTAGTTCTGAAGCCTGTAAGGCTCCTTACTTTAACATACCAAAGGTTACTGATGCAGACACTGTATCAACTCGTGTGGGTACTCTTTAAATTCCAATGCCAACTTAAATCATTCATGAAATATATGTGGAGGATTGTGCAATGTTTTAAAGGAGTGTGTGGCTGGTTGGAAAAGAGATGTTTTATCTACAGTAAAAGCATGAATATTTTGCACAGTCTGAACATTGTGCTATTCTCGAACAATGTGCTGTCATGCTTTATTGGCTTGGTATGACTCATTACAGAACAACATTAGGATATATTTCCTAAGGAAGAGGATTGTTCCTCTTTAAGGTACAGCCTCTGACATTTTTTGGGGAACAACATTCCTTTCCCCAATGTCTTGTATGATTTAGCGCATAGTTAAAAATAAGACGAGGCTAAAcataatctctcgtggacagactacATAAACATTAATGGTTGAGCATTTGACCAAATTACGTAAGATTTTAGTTCTGGGCATACCGAGTTTAGGCTAAAACTAACATTATTTTTCTCTAAATATATGTAGATGGAAATACACATTGTGTTAGATTTTAATTGGAAATGCATTGGCCAGCAGTGTCCTTAAACCTGTGGTTAAACTCATGTGGGTGCTGCCTTCTGTCAGGGTCATCTGTAAGTGTTGAACAGTGAATGTTTTGGATTGtttggtcaatataatggatcaCTTGCCCATTACCCAGCTTCTGAAATGGTTATGTTTTCAGTGCATGTTACAGTGTATGAATGGGAAATGTTTCTGCTGAGCTTATTACTGTTCAAAGTAAATCTCCACATAACAATCCCTTTTTAAAGTTCAGCCATTGTCTCAAGGAAAAGTTCCGTTTCTGCCAAGTGTttcttgaaagtgttattttctGTCTGtggagggggaaaaaataattgTATAGAATTGTCTAGAATTGTACTGTTGTCCTCTCCTTGTATTTGTCTGTGTTGCTTGCATAAACATGTCCTATAGACTCTCCCACCTCGTGCAATCACACCTGACTAGATTGTGGCCATCATGCCAGGGCAGAATGCATCCTATTTGCAAACACTGTATAGTTGTTCACACTCAATCAATGTGCATTGTTTACCAACAGTCATTCACTAGAAATGTGTTAATATCTTTGTATTGTTATTGATTTGCTTTTTCCCCCCCAGAAACCATTTATTAGATCAACTAACATTAATCAGGTCCGCCTTTTTGTTTGCCAGCTTTATTCGACTCAGGGGAAAATTTCTATCATATAATCCACGGTCTAATCACTCACGTATTACAACCTGTTTGAGTTGGTTCTTTCCACTGATAATGTATGAACACCAATCACAGAGgaatgttctgtgtgtatgtatgctgcCTGTCAGTTTGTCTGTAGTGTTATGGGCCATTGTGAGTGAGCTGTATGTTCCTAAGAGTTATATAAAAGAATATTAAAAAACAATGTTATTATATGAAATGTCCAATTGTTAATTTTATGGATGCTGATGGGATAGGGTACTGCCTTGAATTGAGGACATGACAGTTTGTTCAACATGACAATTAAAAATGTACACAATA

Function


GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17306 ARMC1; armadillo repeat-containing protein 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2423362 lncRNA downstream 102892 23036810 ~ 23041327 (-) True G2119398
TU2423358 lncRNA downstream 105125 23033771 ~ 23039094 (-) True G2119395
TU2423355 lncRNA downstream 105808 23033230 ~ 23038411 (-) True G2119394
TU2423354 lncRNA downstream 105970 23033053 ~ 23038249 (-) True G2119393
TU2423183 lncRNA downstream 236584 22905184 ~ 22907635 (-) True G2119237
TU2423553 lncRNA upstream 162749 23317578 ~ 23319702 (-) False LOC110508185
TU2423703 lncRNA upstream 457193 23612022 ~ 23613195 (-) True G2119699
TU2423778 lncRNA upstream 573284 23728113 ~ 23732967 (-) True G2119766
TU2423808 lncRNA upstream 626124 23780953 ~ 23781185 (-) True G2119795
TU2423809 lncRNA upstream 627723 23782552 ~ 23782983 (-) True G2119796
XM_021589542.2 mRNA downstream 25896 23104071 ~ 23118323 (-) True LOC110508760
XM_036966220.1 mRNA downstream 25964 23104071 ~ 23118255 (-) False LOC110508760
XM_021589537.2 mRNA downstream 88873 23042538 ~ 23055346 (-) True nmnat2
XM_021589533.2 mRNA downstream 204654 22934260 ~ 22939565 (-) True LOC110508754
XM_021589528.2 mRNA downstream 315578 22822072 ~ 22828641 (-) True LOC110508750
XM_036966426.1 mRNA upstream 5327 23160156 ~ 23183512 (-) False LOC110508763
XM_036966427.1 mRNA upstream 5327 23160156 ~ 23183512 (-) False LOC110508763
XM_036966428.1 mRNA upstream 5327 23160156 ~ 23183512 (-) False LOC110508763
XM_021589549.2 mRNA upstream 5327 23160156 ~ 23190192 (-) False LOC110508763
XM_021589546.2 mRNA upstream 5327 23160156 ~ 23190193 (-) False LOC110508763
TU2422040 other downstream 536413 22594533 ~ 22607806 (-) True G2118200
TU2421095 other downstream 1195961 21942981 ~ 21948258 (-) False LOC110508740
TU2423555 other upstream 170172 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 1510045 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 1575845 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 1989233 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 2043419 25198248 ~ 25274626 (-) True G2121457

Expression Profile