RNA id: XM_021589547.2


Basic Information

Item Value
RNA id XM_021589547.2
length 4178
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC110508763
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23160156 ~ 23190193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGGGCTCATCAGATAGTCGATAGCTCCATCGCTGGTGGGAACTTACGTTTGGGAAGAGGGTAAAACAGCGAAATATACGGACTACGGTGGCGTTGTAGCCTTTGTTGTCGTTTGCTTCTTTAATTTTCATTTTTGGACCCATGGATACTTGTTTGTTTCGAGGTGAAGAACGCATATTTCCCTCGTGATGCTATATGAACAATGATTACCGTCTGTGCGCTACCGTAATTTATGCCATCAATGAGGGGGAAATGGACTGAATGCAAGCTGATTACTTTCTCTACCGCCAAGGCACCGCTCCATGCAGGGACAGAATAAACACACATTTAGTTGTAAATGAAAGTTTTATATACCATTGTAGATGACCGCTCTTATTTTCTGAATATATTTTTTCCGTCTCTGAATCGTTTTCATCATCTGATTTTTGGTTGCTTGGACGTTGCACTGTCTCCGGGAAATAAGGATTTTTTTTATATGAGGAAGCTATTTATTACAGAGATACCAAAAAGAAAGAGGCCTTTCCGTTTTCAAGGCCGGATTTGAGTTCAATAGGGTAAAATGGTAAACAACCCAAATGGATAAAATATGGATATCATGGGACTTATTGGAATGTGATATTAGAGGAGTGGGATTGCTTTCGATAACGTTTCGTGCAAGTTTGAAGCATCAAAAAAAGATAACAGGCCATTGTAGTCACAATCACTAAATCTATTTGACTCAAATTAAGGGAAGGGGTGCTGTTGTTGTAATTGGCACATTTGCAGTTGTGCCATCAGCATAtatgcaacatttttttttacgtgATTTGTATGTTGCTTTTTTATTGCAATTTGAGCTGGACCGAGCTTTGACTGTTCAATGGAAGTATGTTATCAGTTACCGGTTTTGCCTCTAGACAGGCCGGTTCCTAAACATGTTCTCAGCCGTAGGGGAGCCATTAGCTTCAGCTCCAGTTCGTCTCTTTTTGGTGGACCTGCCCCAAGACAGCTGTCCAAGAGACGAGGGGCGATCTCCTATGACAGTGAGGATCAAACGGCTCTCTACATTCGGATGCTCGGTACGTATGATGTGAGAGTCAGAAGCCAGGTGGGGTTTGAACCAGAGCGAAGAGGGTCTCATCCCTACTTGTATGTCGATTTCCGAACTTTGCATTCCCGACCTGAGGCTGCGCGGCCTGTGTCTGCCAGGAATGTTCGAAGGTTGCTGAGCTTTCAGAGGTACCTCCACTCGTCACGGTTCTTTCACGGCATCCCAGCCAACAACCCTCTAGGCTACATCCTTGACGATGACTTCACAGGTCAAGCCAAGTTAATGCTGCAGAAGGTTGGAAACTGGAACTTTGATATTTTCCTGTTTGACAGACTTACGAACGGGAACAGCCTCGTAAACCTGACCTTTCACTTATTCAACACTTATGGGTTAATTGAGCTCTTCCAGTTGGACATGATTAAACTTAGAAGATTTTTAGTCATGATTCAAGAGGACTACCGCTGCCAGAACCCCTACCACAATGCAGTCCACGCTGCAGATGTGACTCAGGCCATGTATTGTTACCTGCAGGAGCCCAAGCTTGCTGAGACGCTGACCTCCTGTGATCTCCTGCTGGGTCTGCTGGCTGCTGCCACCCATGATCTGGACCATCCAGGTGTCAACCAGCCTTTCCTCATCAAAACGGACCATTACCTAGCAGCACTGTACAAGAATAGCTCAGTTTTGGAGAATCACCACTGGAAGTCTGCGGTGGGCCTGCTCCGCGAATCAGACCTGCTGTCCCACCTCCCCACTGAAGACGGATTGAACATGGAGGAGCGGCTTGGATCCCTGATTCTGGCTACGGACATCAGCAGGCAGAATGACTATCTTTCAGAGTTCAGGACACACTTGGACAAGGGAGACCTCTGCCTCACTAACGGAGGACATCGACACTTTATCCTTCAGATGGCTCTGAAGTGTGCGGACATTTGCAACCCCTGCCGACCGTGGAAACTCAGCAAACAGTGGAGCGAGAAAGTGACAGAGGAGTTCTTCCACCAAGGTGACATTGAGCGGAAACATAATCTTGAAGTAACCCCACTCTGTGACAGGCAATCCAACTCGGTTGCCAATATACAGATTGGTTTCATGGCGTACGTGGTAGAGCCTCTGTTTGTGGAATGGTCACGCTTCTCCGACACACGGCTGTCCCAGACCATGATGAGCCACCTGAGCCTGAACAAGCAAGGCTGGAATGAGGGGAGGGACAAGCAGGAGGCTAGCTCTAGTAGGGCCTCAGAGGAACAGAGGACTCCTGCCACCAAAGACTCAAACTCCAAAGTATTACCTCAGGGAAGCAAAGGGTCATGACATGCCAAGCATGACTGGCGCCCACGGTGAGGTGAGAAAGAGTGAAACGAATCTCCGCATCCGACAGAAACGACATTACCCAGCACTCCCAGCACCACAGCAACTCAGCCACACGCTCCGCATCTAGGTTAAccactgtttttgttttttatgtaATTTAACTTAATTTATTGAATTTGGACCCTTTACTTTAACAGAGCAATACATATATACCTCATGTTGCTTCTGctgtatgtatttttatttaattttgtaCTGTAGTTCTGCTCTGACATCACTAATTTGACACGTCACCCTTTTAACAGAGACCTGAAGGGAATGTTTTCAACAAGACCCTTCTGATTAAAGTgccatttgcaaacattttgttaatgtttttaaagtgAGGAAACCTTGTATTCAAAAAGAGAGGTTCATGTTGAATGAATGAGACGAGCTTCTATGTGTTGCTGCATTTCAGACTAATAGTAATACTTCCTCGTACAAGAAATGTGACGAGCCCACTTCACTGCTGCCTCTGAAGACTGTTTACAAGCGTCTTTTGTGCTGCATTTCACAAATTAAACATtggttctgtaaaaaaaaaaaagctcatactgtatgtgaataACCACTCACATGAAGTACTTGTCCTGTTGACAACACACTGAACAAACATCTGATTGCAGAACAACACAAATGCCCTGAAAGGACTGTTTTGGTCTGTTCGTTGTTCCTTGCACTGTGAACTATAACAGGTTTTATGACCCAATAGTCAGTCAGCTCAGAGACCACTTGTGTGAAAAAAGTCCATTGGATGTGGTATGAAATCTATGTATTTCTTTACTGATATGGTGTACAGTGTTTTGGTGATTTAACCGTAGCCTAATAACAATGTTTTGTAATGGGGAAACAGGGCATGCGTGTGGCcttaaccatagaaatagaatctagATTCTATTTTTATGGCATTAACATTCTTTCAACACTTGAATAACCACTCTTCCATACTAGTAACAGATGACCTGAGTTGAGGGTATAAACAGCATGACTATTTATTAAAGTTGATATTAGGTGGTCTGCCTCTGGTATGGCTGTGCCATGATCTACAAAGTTATTTTAGAGAGTCGAAGCCCTTTCTAGAATGCAAACACAACTTTTAAGACTGGCAAGATATACCTTTAAACTATGCACAAAACTAATTGACCAAAccagttatttttttttttatttatttttttttttatttatttttttataaggTCGATCGTCTTCTCTCAATGCATTGTCCGACTGTTTGCCTCTGGTGTGAAAAGGAAATGACTTGGCATTAGTAGATTGGACAGTGATCCAGCCATAACATAAAACATTccatatttaatttatttttggtATTGTTTTTGGATTCTGTACACAAGACACGATTGTGTCTCTGGTTGGACTTTCAGTATATCCAATGAAAACCGGTGCTTTTCATATTATGGCAAACGTGTATTTTCTGGTTACTATTGCAAGACTGTTCGATAAAACTGTTTACCATTTTGATCTAAGTCATTTTCGGGTAGGAACTTGCGTGGCAAACTATTTTGTGAAAAGCTTTGCCAAATTGATATTTTGATACATGCCAGTTGCAGTTACATTTTCATTAATAAAACAACTTGTCACACTTATGCGTTTGCTCTATTTTTCTCTGTCCAGTTTAAAGCCCCAGGCGTTCTTTACAGTTCTACAAAGAATGTTGTCTCTCTGGGGTTTTGCATAGAGGAGCGATAAATAAGAGTGAAAAGGCATGATTGGGTTTTGATAGTGtcgatttagattttttttctccattaaaGATACTGATAAAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2423362 lncRNA downstream 118829 23036810 ~ 23041327 (-) True G2119398
TU2423358 lncRNA downstream 121062 23033771 ~ 23039094 (-) True G2119395
TU2423355 lncRNA downstream 121745 23033230 ~ 23038411 (-) True G2119394
TU2423354 lncRNA downstream 121907 23033053 ~ 23038249 (-) True G2119393
TU2423183 lncRNA downstream 252521 22905184 ~ 22907635 (-) True G2119237
TU2423553 lncRNA upstream 127385 23317578 ~ 23319702 (-) False LOC110508185
TU2423703 lncRNA upstream 421829 23612022 ~ 23613195 (-) True G2119699
TU2423778 lncRNA upstream 537920 23728113 ~ 23732967 (-) True G2119766
TU2423808 lncRNA upstream 590760 23780953 ~ 23781185 (-) True G2119795
TU2423809 lncRNA upstream 592359 23782552 ~ 23782983 (-) True G2119796
XM_021589545.2 mRNA downstream 5327 23144219 ~ 23154829 (-) True LOC110508762
XM_021589542.2 mRNA downstream 41833 23104071 ~ 23118323 (-) True LOC110508760
XM_036966220.1 mRNA downstream 41901 23104071 ~ 23118255 (-) False LOC110508760
XM_021589537.2 mRNA downstream 104810 23042538 ~ 23055346 (-) True nmnat2
XM_021589533.2 mRNA downstream 220591 22934260 ~ 22939565 (-) True LOC110508754
XM_021589550.2 mRNA upstream 20645 23210838 ~ 23212507 (-) True LOC110508765
XM_021589552.2 mRNA upstream 56474 23246667 ~ 23253906 (-) True LOC110508766
XM_036966251.1 mRNA upstream 96313 23286506 ~ 23314443 (-) True LOC110508767
XM_036966465.1 mRNA upstream 127382 23317575 ~ 23353162 (-) False LOC110508185
XM_036966466.1 mRNA upstream 127382 23317575 ~ 23353162 (-) False LOC110508185
TU2422040 other downstream 552350 22594533 ~ 22607806 (-) True G2118200
TU2421095 other downstream 1211898 21942981 ~ 21948258 (-) False LOC110508740
TU2423555 other upstream 134808 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 1474681 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 1540481 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 1953869 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 2008055 25198248 ~ 25274626 (-) True G2121457

Expression Profile