RNA id: XM_036966251.1


Basic Information

Item Value
RNA id XM_036966251.1
length 6827
RNA type mRNA
GC content 0.50
exon number 38
gene id LOC110508767
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23286506 ~ 23314443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTGACAGGTTGCTGACAGAAATCGGTGGGATTTCCTTTCTGGAATAAAGGATATTTTTATGTTTCTTCTTAGTGCTCCAATGTTACCCTCTCTAAAAAAATAagactataacaacactattcTGTCCACGGGGCAGCAGCTTTGAATACAGTTCCATTACATCATGTATGAGAGTAAAACGAGAAACATGTTTTTAAACCGAGCACTGGAGAAGATTTTAGCCGATAAGGAGGTGAAAAAAGCTCACCATTCCCAGTTGCGCAAAGCCTGTGAGGTGGCACTAGAGGAAATTAAAGAAGAAACAGAGAAGCTGAGTCCCCCTCCTGGAGACAGCAATGCTGATTCCAGTACCCTACCACCGGTCAAGTCCAAGGATACCATCATTGAAGCAGACAAGTACTTCCTGCCATTTGAGTTAGCCTGCCAGTCCAAATGTCCTCGCATTGTCATCACATCTTTAGATTGTTTACAGAAACTCATTGCTTATGGCCACCTCACTGGAAACGCACCAGACAACACCACGCCTGGTAAGAGGTTGATCGATAGAATCATCGAGACGATATGTGGCTGCTTTCAAGGCCCTCAGACAGACCAAGGTATTCAGCTACAAATTATAAAGGCTCTGCTGACATCGGTGACCTCTCAACACATCGAAATCCACGAGGGCACAGTGCTGCAGGCTGTCAGGACTTGCTACAACATCTACCTGGCCAGCAAGAACCTCATCAACCAGACCACGGCCAAGGCCACCCTCACACAGATGCTCAATGTTATCTTTGCACGTATGGAGAACCAAGCACTCCAAGAGGCCAGACAGATGGAGAAGGAGCGTCTAAGACAGCAGCATCTGCAGCCGTCACCAGTCAGCCAACAGGGGCAGGAGCCTCCTGCCTCCCCTCATCTGGAGCCCCATGCCTCCCCTAAACAGGAGCAGCACACCGCCTCACCCCCACCTCAGGAGGAGGCCACCCAGATGCCTGAGCAGAACACTTGCGGGGACCTGGAGCCTGAGAACGGTTCTGTGTTCTGCAGTGCTGAGAATGAGCAGACGGAGGCGGACCAAGCTACCGCAGCTGCTGCACAGgGTTTTTCTCCGCAAGATGCTGAAGGGGTTGTTGAGCAAGAACCATTCAACTATGAGGAGGAGCAGGCTCAAGAGATGGTCCAGACCATGCTGCAGGAAGTTGTCAATACAGTTGTTGGAGaaTGCAGGGAGAGTGTGTGCAGCGCTACAGAGTGTGTAGACGATATGCCAGTCCCGGTGGAGGAGGAGGGCGGGCTGGGCAGCGACACAGAGAACGTCCATGCCAACGGTATCCCTGGCACACCTATATCTGCCAGCTTCACCCCCTCACTGACAGATGACAGGATCTCTGTCTCCTCCAACGACACTCAGGAATCTGGAGCTACGAGTGGTTCGTCTCCTGTTGCTAAGTTCTCCCATATCCTCCAGAAGGATGCCTTTCTAGTTTTCCGCTCTCTCTGCAAACTCTCTATGAAGCCACTGTCTGATGGACCTCCTGATCCTAAATCTCACGAGCTGCGCTCCAAGGTGCTGTCCCTCCAGCTGCTGTTGTCCATCCTGCAGAACGCGGGGCCCGTCTTCAAGACCAACGAGATGTTCATCAACGCCATCAAGCAGTACCTGTGTGTGGCGCTGTCTAAGAACGGCGTCTCCTCTGTCCCCGAGGTCTTTGAGCTCTCGCTCTCCAtcttcctcaccctcctctcccacttcAAGACTCACCTCAAGATGCAAATCGAGgtGTTTTTCAAGGAGATCTTCCTCTACATCCTGGAGACGTCCACCAGCTCCTATGATCATAAATGGATGGTGATCCAGAGCCTCACCAGGATCTGTGCAGACGCCCAGAGTGTGGTGGATATCTATGTCAACTACGACTGTGACCTGAACGCTGCTAATATATTTGAGAGGCTGGTCAATTACCTGTCGAAGATAGCACAGGGCAGAGTGGGGCATGAGCTTGGCACCACACCTGCTCAGgAACTGAGCTTGAGGAAAAAGGGTCTGGAGTGTCTGGTGTCCATTCTCAAGTGTATGGTGGAGTGGAGCAATGATCAGTATGTGAACCCTAACTCTCAGACCAGTCTAGGTCAGGAGAAGCCCGTGGATCAGGAGCCCAGTGAGAGCACCAAACCACCAGAGAGTATCAACCGCTACGGCAGCCTCAACTCCCTGGACTCCAGCGCCTCCTCAGGCATCGGCTCCTACAGCACCCTCATGTCAGGAACGGACAACGCAGAGCAGTTTGAGGTCCTCAAGCAGCAGAAAGAGATCATCGAGCAAGGCATCGACCTGTTCAACAAGAAGCCAAAGAGGGGCATCCAGTACCTGCAGGAGCAAGGGATGCTGGGTACCACACCAGAGGACCTAGCCCAGTTCCTGCACCAGGAGGAGAGGCTAGACTCTACTCAGGTGGGTGAGTTCATCGGGGATAACGAGCGCATTAATAAAGAGGTGATGTACGCCTATGTTGACCAGATGGATTTCCAAGGCAAGGACTTTGTCTCGGCTCTGCGTCTATTCCTGGAGGGCTTCCGTCTGCCCGGAGAGGCCCAGAAGATTGATCGTCTCATGGAAAAATTTGCGGCCAGATATTTAGAATGTAACCAAGGGCAAACTGAGTTCGCTAGTGCAGATACGGCCTATGTCCTGGCTTATTCAATCATTATGCTGACAACAGaccttcacagtccccaagtGAAGAATAAAATGACAAAAGAGCAATACATCAAGATGAACCGAGGAATCAACGACAGCAAAGATTTACCTGAGGAGTACCTGTCAGCTATTTACGATGAAATCGCAGGGAAGAAAATAGCCATGAATGAAACCAAAAAATTAACCCTCAAATCCAGCAAACAAAGTGTAGCCAGTGAGAAGCAGAGACGTCTGCTGTATAATGTAGAGATGGAGCAGATGGCTAAGACAGCCAAGGCCCTGATGGAGGCAGTCAGCCACGTCCAGGCTCCCTTCACCAGCGCCACCCACCTAGACCACGTCAGACCCATGTTCAAGTTGGCATGGACCCCGTTCTTAGCAGCGTTCAGCGTGGGTCTTCAGGACTGTGATGACACTGAGGTAGCCTCTCTGTGTCTGGAGGGGATCCGCTGTGCCATCAGGATAGCCTGCATCTTCACCATCCAGCTAGAGCGTGATGCGTACGTCCAGGCCCTGGCGCGGTTCACCCTGCTCACAGCCAGCTCTGGTATCTCTGAGATGAAGCAGAAAAATATTGACACCATCAAGACTCTCATCACCGTCGCCCACACTGATGGCAACTACCTGGGCAACTCCTGGCACGAGATCCTGAAGTGTATCAGTCAGTTGGAGCTGGCCCAGCTTATCGGGACAGGGGTGAAGGCTCGCTACATCTCAGGGACAGTCCCGGCCAAAGGGGGCCTCCTGGCCAGCCTGAGAGAGCAGGCCTCAGACAGCTCAGAGTACCTGGGACTGGTTGGAGGTAATGTGGACCGTAAACAAATAGCCAGTATTCAGGAGTCCATTGGAGAGACAAGCTCCCAGAGTGTCGTCGTTGCTGTTGACAGGATATTTACTGGTTCTACCAGACTCGATGGCAATGCAATAGTTGATTTTGTCCGGTGGTTGTGTGCTGTATCCATGGACGAGCTTGCCTCACCGACACATCCGCGTATGTTCAGCCTTCAGAAGATTGTGGAGATTTCCTACTACAACATGGGCCGCATCAGGCTTCAGTGGTCTAGAATTTGGGAAGTCATCGGGGACCATTTTAACAAGGTTGGATGTAACTCCAATGAGGATGTGGCTATATTTGCTGTTGACTccctgaggcagctgtctatgaAATTCTTAGAAAAAGGAGAGCTCGCCAACTTCCGTTTCCAGAAGGATTTCTTGAGGCCTTTCGAACATATCATGAAGAAGAACAGGTCTCCCACCATTCGAGACATGGTGGTGAGGTGTATAGCTCAGATGGTGAACTCCCAGGCTGGGAACATCCGGTCAGGGTGGAAGAACATCTTCTCAGTGTTCCACCTGGCTGCCTCGGACCAGGACGGGAGCATCGTAGAACTGGCCTTCCAGACCACCGGCTACATCGTCACGAATGTATTTGAGAAGCACTTCCCGGCCACCATTGACTCTTTCCAGGATGCTGTGAAGTGTCTGTCTGAGTTTGCCTGCAACGCCTCCTTCCCTGACACCAGCATGGAGGCCATCCGCCTCATACGCCACTGTGCCAAATATGTGTCTGAGAGGCCACAGGCCTTCAAAGACTACACCAGCGATGACATGAATGTAGCCCCGGAGGACCGGGTGTGGGTGCGAGGATGGTTCCCCATCCTGTTTGAGCTCTCCTGCATCATCAACCGGTGTAAACTGGACGTCAGGACAAGGGGCTTGACTGTGATGTTTGAGGTGATGAAGACCTATGGTCACACCTACAAGAAACACTGGTGGCAGGATCTGTTCAGGATCATCTTTAGGATCTTTGACAACATGAAACTTccagagcagcagactgagAAAGCTGAATGGATGACCACCACCTGTAACCATGCACTTTACGCCATCTGTGATgtcttcactcagtactttgagCCTCTCAGTGATATTCTCCTGGATGATATCCTGTCCCAACTGTACTGGTGTGTACAacaagacaacgAGCAGCTGGCGCGCTCAGGGACCAACTGTCTGGAAAATGTAGTCATTCTGAACGGGGAGAAGTTCAGCCCAGAGATATGGGACAAAACCTGTAACTGTATGCTGGACATCTTCAAAACAACCATCCCTCATGCGTTACTGACGTGGAGACcagctggaggagagggggagctgATGCCACAGTACGACCTCTCAAACCTGGACTCCATATCCCAGAAGTCAGTGGACATTCAGACTCGTACGGAGGACCAGcagtcagtgtgcagtgtggACAGGATCTCCCTGGAGAACCAGAGGCAGAGGACATACAGCGGCTCCTCGGGCACACATGAGGATGGCCCCAGGGCTAGGAACCCAGCCAAGATGCAGGAGCAGAGGTTATTCTCAGCGCTGCTCATTAAGTGTGTTGTGCAGCTGGAGCTGATCCAGACCATAGACAACATGGTCTTCTTTCCCGCCAGCAGCAGGAAGGAGGATGCAGAGAACCTGGCTGCTGCACAGAGAGACACAGTAGATGCAGATGTCCAGTTGGAGGCCCAGGACCAGGGAATGTACCACTATCTGACCTCGGATCAGCTCTTTAAACTGCTGGACTGTCTGCTGGAGTCCCACCGCTTCGCCAAGGCCTTTAACTCCAACAACGAGCAGAGGACTGTCCTGTGGAAGGCTGGTTTCAAGGGGAAGTCCAAACCCAACCTGTTGAAGCAGGAGACCAACAGTCTGGCTTGTGGCCTCCGCATCCTGTTCCGCATGTACACAGATGACAGCCGCAAGGCAGCCTGGGAGGAGGTGCAGAGAAGACTGCTCAATGTGTGTGGGGAGGCCTTGGCCTACTTCCTCACTCTGACGTCAGAGAGCCACCGGGAAGCCTGGAccaatctcctcctcctcttccttacCAAGGTTGTGAAGATCAGCGATGACCGGTTCAAGGCCCATGCATCCAGGTACTTCCCGCTTCTCTGTGAGATCATGCAGTTTGACCTGATTCCAGAACTCCGGGCCGTGCTGCGTAAGTTCTTTCTCCGCATCGGCAACGCCTTCGACATCTCACTGCTGCCTAGTCACCGAGAGGAGCTAGGTCCTGCTGGGAGCCAGTGACATCATCACTAGTGGACCAGGACCAGCACAGTACACAGGCTGCTCAGAGTCTCTCTCTGGGGTGGGAGAGGGgaagggtgcatcccaaatggcactacaTTATGGTACTGGAAGCTCCTCCATGCTGCACAGTGATGTTAATGGTAGTGTGGTGAGTGGGGCCCAGAAAAGCACTGAATGAATGGCTGCAGTATGGCTTCCTTGTACAGCATAGAAATACCCTACAATATCATacagatgatggttataacaGTGCAATTATTCTGGTCATTTCTCCCCCTCTGACCAGAGGACTAACTAACATTGTGGAGGCTGTGATGTGTGCTTTTTGGTATCTCTTGGCATTATTTTATGGAACTGAGGAGGTATGAAATTGTTAGTGAAAAGGATGAGTAACGTTAGCAGTGATTTTTCTTTTGCACAGCCACTAGGTACCAAACAGCAGCCTTCCAATACAACTAGACAATTCAAAAGTAGCTTTGTAATATACTAAGGCCATGTTTACAGACTAGACAGACCAGTTCTGATCTTTTTTTAAATTCCACTAATTACATCAGATCTGATTTGtgaaaaaaaagatcagaatcgGGCTGCCGGTGTAAACGCAACTTAAAACCTGTCATGCATTTTTCTTTTGAAATCTAACAGCACTTGTCATTTCAACTTAACCTTACCATGACACTATTGTATGAAGATGAGTAAATGTTATTCCactctatgtatatactgtagtactttGTTTAAATTTAAACACATTTGAATTTGCTAAATCTTGTCAGCAGTCACCACATGTTTGATGTattgtcatttaaaaaaagaaaacaattcTACATTGAATATATGGAGGTTAAATAGATGTCTGAGTTCTGAAAATCAAGACACACATGGTGTTTGAAGCTGTACTGTGAGGATAGTGTTTCTTGGCGAGTCGGTTATATTGGGAAACAAGAGGTGTACATGACACACTGTTAATTACCACCAGGAACATTCTCATTAGTCAATAAAGGTTTGTCTTTGCATTGATATGTAACTGACAGACGATTCAGTTGCCTCAA

Function

GO: NA

KEGG:

id description
K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2423402 lncRNA downstream 111976 23092323 ~ 23174530 (-) True G2119432
TU2423362 lncRNA downstream 245179 23036810 ~ 23041327 (-) True G2119398
TU2423358 lncRNA downstream 247412 23033771 ~ 23039094 (-) True G2119395
TU2423355 lncRNA downstream 248095 23033230 ~ 23038411 (-) True G2119394
TU2423354 lncRNA downstream 248257 23033053 ~ 23038249 (-) True G2119393
TU2423553 lncRNA upstream 3135 23317578 ~ 23319702 (-) False LOC110508185
TU2423703 lncRNA upstream 297579 23612022 ~ 23613195 (-) True G2119699
TU2423778 lncRNA upstream 413670 23728113 ~ 23732967 (-) True G2119766
TU2423808 lncRNA upstream 466510 23780953 ~ 23781185 (-) True G2119795
TU2423809 lncRNA upstream 468109 23782552 ~ 23782983 (-) True G2119796
XM_021589552.2 mRNA downstream 32600 23246667 ~ 23253906 (-) True LOC110508766
XM_021589550.2 mRNA downstream 73999 23210838 ~ 23212507 (-) True LOC110508765
XM_021589546.2 mRNA downstream 96313 23160156 ~ 23190193 (-) False LOC110508763
XM_021589547.2 mRNA downstream 96313 23160156 ~ 23190193 (-) False LOC110508763
XM_021589548.2 mRNA downstream 96313 23160156 ~ 23190193 (-) True LOC110508763
XM_036966465.1 mRNA upstream 3132 23317575 ~ 23353162 (-) False LOC110508185
XM_036966466.1 mRNA upstream 3132 23317575 ~ 23353162 (-) False LOC110508185
XM_021589565.2 mRNA upstream 41870 23356313 ~ 23399785 (-) False LOC110508769
XM_036966053.1 mRNA upstream 41870 23356313 ~ 23407676 (-) False LOC110508769
XM_021589564.2 mRNA upstream 41870 23356313 ~ 23407677 (-) False LOC110508769
TU2422040 other downstream 678700 22594533 ~ 22607806 (-) True G2118200
TU2421095 other downstream 1338248 21942981 ~ 21948258 (-) False LOC110508740
TU2423555 other upstream 10558 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 1350431 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 1416231 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 1829619 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 1883805 25198248 ~ 25274626 (-) True G2121457

Expression Profile