RNA id: TCONS_00055411


Basic Information

Item Value
RNA id TCONS_00055411
length 1236
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_028564
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11079058 ~ 11081961 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATCTGACATGTTCAGCATCATCTCACCAGActcatgtTCCTCTTAGACTGCGTGGAGGGGACGGCCGGTGCTCTGGGAGGCTGGAGGTATACCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACATCAGCGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGCCTTTGGTGCTGGTGAAGGTGTTGTGTGGCTGAACAGAGTCCAGTGCAGAGGAAATGAGCTTCACCTGTGGGACTGTCCTCTCTCCCTGAAGAAGCACACTAACTGCTCCCACAAAGAGCACGCTGGACTCACCTGTGCAGACTTGCCGGATATATCAGTGTCCACTACTCCTGCCACATCAGCATCATCTTCTGCTGCAGTTTCTCAGACAGTGAGCTCAACATCAGTCTCTCCTCCACAAACTGGTCCAGAAACTCTCCCAGTCCCCCcagtgctggtgattgttctgggAGTTGTGCTCTTACTGCTCTTAGTGCCGCTGCTTATACTGATTCAGCAGAACAGAGTGATGAGGAGAGCTCTTTCTAAGAGGAGACACAGAACCACCACTGAGGCCGTTTATGAGGAGATtcagcacaaacacaaacacttcaCTCACAGGGGGAGATTCAATTCTGAAGAACTGCAATCTGGGTATGAAGATGCAGACGAGTTTCTCTCAGAAAAAGAGTTCAAGACGGCTTATTATGATGATGTCACCAGCAACAGTGGTCTAGAAGAAAATATGGTGAAGGAAATCACTCCAGGATATTATGATGATGTCATCGCTGACGGCTTGAAGCCAGATCTAGAGACAGAAGACAGACCTGAGAGTTATGATGATGTCATGATGAGTGAAGAGACCTCTATTATTAAAAAAGTGGACAATCCAGAGTATTATGATGATGTCATTATTAATGGACAGAACCTTGATCATTTAACAGAGGGAGATCAGGAAGAGTATGATGATGTGAAGAACAACAATGAAGATGAGAGAAACCTCTTGGACTATGATGATGTAGAGGAGGAGTCAACTAATGAGGGAGGGGTCATATGAATCAGTGGCCACACCCACAGTCTCTGTTGATGAAATCACATTGTATTTACTGGAGATACTGAGAGTTTCTTATATTACTATTGCATAAGTGCTGTTTTATCTAAtttgattttatatatgtataatctTATGTGCTTTGCaaatttcaata

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-92 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000150307

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058100 lncRNA downstream 266771 10793666 ~ 10812287 (-) False XLOC_028555
TCONS_00055395 lncRNA downstream 266822 10790960 ~ 10812236 (-) False XLOC_028555
TCONS_00055396 lncRNA downstream 266884 10791967 ~ 10812174 (-) False XLOC_028555
TCONS_00055397 lncRNA downstream 282096 10793666 ~ 10796962 (-) False XLOC_028555
TCONS_00058099 lncRNA downstream 286005 10788536 ~ 10793053 (-) False XLOC_028555
TCONS_00055415 lncRNA upstream 42652 11124613 ~ 11125166 (-) False XLOC_028568
TCONS_00055416 lncRNA upstream 42652 11124613 ~ 11125650 (-) False XLOC_028568
TCONS_00055421 lncRNA upstream 97548 11179509 ~ 11186936 (-) True XLOC_028570
TCONS_00055422 lncRNA upstream 163371 11245332 ~ 11248285 (-) True XLOC_028571
TCONS_00055426 lncRNA upstream 320730 11402691 ~ 11404177 (-) True XLOC_028572
TCONS_00055410 mRNA downstream 1186 11070864 ~ 11077872 (-) True XLOC_028563
TCONS_00055409 mRNA downstream 11727 11066785 ~ 11067331 (-) True XLOC_028562
TCONS_00055408 mRNA downstream 14985 11054309 ~ 11064073 (-) True XLOC_028561
TCONS_00055407 mRNA downstream 25515 11035103 ~ 11053543 (-) True XLOC_028560
TCONS_00055405 mRNA downstream 54214 10972585 ~ 11024844 (-) False XLOC_028559
TCONS_00055412 mRNA upstream 2248 11084209 ~ 11098539 (-) True XLOC_028565
TCONS_00055413 mRNA upstream 17080 11099041 ~ 11106856 (-) True XLOC_028566
TCONS_00055414 mRNA upstream 30619 11112580 ~ 11122638 (-) True XLOC_028567
TCONS_00055417 mRNA upstream 42653 11124614 ~ 11132617 (-) True XLOC_028568
TCONS_00055418 mRNA upstream 62639 11144600 ~ 11165961 (-) False XLOC_028569
TCONS_00055389 other downstream 417381 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 2491150 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 2937592 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055313 other downstream 3203128 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 3203298 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055432 other upstream 524797 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 526235 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 1193153 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 1331458 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 1513719 12595680 ~ 12595804 (-) True XLOC_028597

Expression Profile

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