RNA id: XM_021589567.2


Basic Information

Item Value
RNA id XM_021589567.2
length 6293
RNA type mRNA
GC content 0.52
exon number 22
gene id LOC110508769
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23356313 ~ 23407721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCGCTGCGCGTGTGGGGGAGGACTATGGGCATGATAAACAAGCACCACAGTCATCGCAGAGGAACATGGCGGCAGTGCTGTTACATTGCCGATTCACGAGTACGAAGGTCCTGACATAACAGTTCAAATTTATGGGACTTCAAGTTACGGCCTTCAAAGAGAGGAGTGGGTGATGCCTGCAGAAGTTCATTAAGAAGGATGCGTTTCATAAGCCAAGttGGTGATATTTGCTGAAGATGAGTAGTGCGGGGGACAACACCCCCGACCCTGCTGCCAGGGGAGAGTCTCTTAAGCGGAAAGAATGTGGCCCGGATCTCCTGGGGCCCAGCCCCAAGAGGAGCATGGAAAAACCAAACCGGGAGCATGAAAACAAATACATTGAAGAACTGGCGGAGTTGATCTTTGCAAACATCAATGACATTGACAACTTCAATGTCAAGCCGGACAAATGTGCAATCTTGAAAGAAACTGTGAAGCAGATTCGTCAAATAAAAGAGCAGGAGAAAACAACTACTGCCAATGCAGAGGAGGTACAGAAAGCACACGTCTCGTCAACAGGCCAAAGTGTTATTGACAAAGACGCTCTTGGACCAATGATGCTCGAGGCGCTGGACGGGTTCTTCTTTGTGGTGAACATGGAGGGGAACATTGTGTTTGTGTCGGAGAACGTGACCCAGTACCTGCAGTATAATCAGGAGGAGCTGATGAACACCAGCGTCTACAGCGTCCTGCACGTAGGAGACCACGCAGAGTTCATCAAGAACCTTCTGCCCAAGTCCCTCGTGAACTGCAGAGCACCGCGGTCCAGTGAGAACCCCAACAGGAATAGCCACACGTTTAACTGCCGCATGCTGGTCAACCCCCACGGGCCCTGGGAGGGAGGTGAGCAGGAGCCCCAGGACCAGGAGGTGCAGCAGAAGTATGAGACCATGCAGTGTTTCGCCGTGTCCGAGCCAAAGTCCAtcaaagaggagggagaagATTTCCAGTCTTGCCTGATCTGTGTAGCACGAAGGGTTCCTGTCAAAGAGAGGCCCATGCTCCCAACATACGAGAGCTTTACCACCAGGCAGGATCTCCAAGGTAAGATCACGTCGCTGGACACCAGTCTGCTGAGAGCCTCCATGAAGCCAGGCTGGGAGGACCTGGTCAGGAGATGTATCCAAATGTTCCACCTGCAGAACGACGGGGAGATGTCATTTGCCAAAAAGCATCAGCAAGAAGtcctgaGACAGGGCCATGCGTTCAGCCCTCTGTATCGCTTCTCCCTGTCCGACGGTACCATTGTGTCGGCTCACACCAAGAGCAAGCTGGTGCGCTCCCCTGCCACCAACGAACCTCAGCTCTACAtgtccctccacatcctccagaGGGAGCAGACGATGTGTGGGATGAACCCAGACATGTCTGCCCAGGGACAGGGGATGGGGAAGCAGCCAATGAACACTGTGTCTTCACTGACTCCTCCCAGTGTGGGTGGGCTGTCCCCAGGGTTGGGGGGACAGGACACAATGGTTGGCAGCAATACCAACATGGCCACCATGGGTGGACGTTACAGATGCCAGGGGGCTATGAACCGTTCTCCCACTCCTCGGGGTAGCAGCAACTATGCACTCAAGATGGGGATGAACAGCCCGTCGCAGGGCAGCCCCAGTGTGACCTCTCAGGGGGGTCAAAGTGGCGGTGGTACCATGGTGTCCCCACGCCACCGCCAGAGCCCCAGTGTGGCGGGTTGCCCCCACGTTCTTCCCACAGGACCCTTCTCCCCAACGGGCAGCCTGCACTCTCCACTAGGGGTGTGTAACAGCACAGGGGTGGGGAACAACCACAGTGCCTACACTGGTAACAGCTCCCTCAACGCCCTTCAGGCCCTCAGCGAATGCCACGGGGTCTCCCAGCAGGGGCAGTCCATAGGGTCACCTGACAGGAAGCCAGGCAGCATGCTGCAGATGCAGAGTCCCCCTGGTAGTGGTGGAGCTAGCAGCACTAGTAACCCCAACCTCAACTCCAGCCAGCTGGCCAACCGCAGCAGCTGCACgtctgagagagagatagagatgtttGGAGCGTACGGGGAGCAGTCCCAGCCagacggggaggagagggagaacgtGGAGCAGAGGAAGTCGAAAGATGACACCCTCAAGCCTTTTGGAGGATCAGGAGGAGAGCTAACCGAGGCCCAGAACAGGCTCCTCAACAGTAAGGGCCACACCAAGCTTCTGCAGCTACTCACCAACAAGTCAGAGCACATGGAGCCCTGCTCGCCCCACGGGGCCCCTGGGGGAGGGGAGCCCAACTCTAAGGATCCCGGGATGGGACCAGGTGGCCAGAACAATCACTCCACCTCGCTGAAGGAGAAACACAAGATCCTCCATAGACTCCTCCAGAACAGCACGTCCCCGGTGGAGCTGGCCAAGCTGACAGCTGAGGCCACGGGGAAGGAGCTGGGTCAGGGCCAGcaagaccagggaggaccagacaGTATGGCTGCCACCATGGCTGAGATGGCCACTAAGCAGGAGTCCATCAGCCCCAAGAAGAAGGACAATGCGCTGCTGCGCTACCTGCTGGACAAGGATGACAACACCATGCAGGAGAAAGGCATCAAGATGGAGCCCGGGACAGAGATGAAGCTGGCCAATGTGAAGACTGAGAAGCACGACCCGGGATACAACATGGCAGACCAGtcTAGTGCGCTGGAAGACATCTTGGATGATCTGCAGTGTcgccagcagcagcagctcttCTCAGGCCAGCACCACCAGCAGCAGTCCAGACCCGTGTCTCTGCCCACCAACGTAGACAAGCAGTCCATCATCAACGACATCCTGCAGATGACAGAGAACAACCGCAGTCCCACGGGCACCAACACAGAGCAGAAGGCCTTCCCAGGCATGGGCCCAGGACACTTCAATGGTCCCAGGATGGGTCAGCTAGGCCAACGGCCCCCTGTCCGCAGTATGTCCCTGGATCAGTCCAACATGTCTGCCCATGGTTCTCCCCGACCCTTCCCTCCTCCCAGGAACAGCAGCCCCTACTCTGTCATGCAGCAGCAAGCCATGATGGGAAACCACGGAATGTTGCAGAACCAGGCTAACATGGGCAACCCAGGCTTGCCCCAGGCTAGCATGCAGCAGGGTTGGGGTCCTCAGGGGCCAATGGGCCAGGCTCTGCAGCAGAGAATGGGGCCTGATGGTCGCATGGTGCCCAACATCTCAGCTGGAGTCCCCATGAGGCCCAGCAACCAGCAGCCTGGACCCAGACAGATGGTCCCAATGCAGATGATGGGAAACGTGCAATCCGATATGGAGATGGCTGGTCCTCCCTACCCAGGACAGCAGGCACTGCCCAATCAGACAGCCCCGTGGCCTGACCGCATGATGTCAGTGGATCACAGGCCTTATGGGAACCAGAACCGACAGGCTTACGGTAACTCCCAGGATGAGGTGCTGTGTTCTCCCTTGCGGCCTGGGGAGGGGCCTTCGGACGGGGATGCCCTGCTCAGCCAGCTCTATTCAGTGCTGAAAGACTTTGACGGCCTGGAGGAGATTGACCGCGCCCTGGGAATCCCCACTCTGATTAGTCAGGGCCAGCCAGTGGCGCAGGAGCAGTATGCCAATCAGGAGTCACCCATGAGGAAGCCACCCATGTATAGCCAGTACCCCCATGCTGGTAGTATGGCACAGGGCAACTACATGAGCCAGCAGGACCCTGGCTTCCATGGTATGCCCGGTCAGATGGGCCAGCGGATGGGGTACCCCATGCTCCGACTCCCTGCCCGACCAGGAGGCCCGGTGCCCGCCCAGCCCAAcaacctgaggctgcagctgcaGCATCGACTACAGGGACAGCTGCAGAATCGTCAGCCAATGATGAACCAGATGGGTGTGTCCAACATGAACCTACCTCTTAGACCCAGTGTACCCAACCAGGGAACCCTGAATGCTCAGATGTTGgcccagagacagagggagtacCTGAGTAACATCCTGCGCCAGCGCCAGCAGCACGTCCACCAGAGAGCCATGCTGATGCGGGCCCAGGGCCTCATCGCCCCCCCCAACATGGCTTCAGCGGCTGGGGCAGTGGAGCCCTCACAGTCCCCTGGCATGCCCCCCGGTTCCATGGGCACCAACCCTCGGATCCCCCAGGCAAACCCCCAGCAGTTCCCCTACCCGGCCAGCTACGGTACTGGTCTTACGTCTCCGCCACCCTCCACCAGCCCCTTCCCCCCGCTGTCCCCTGGTCTCCCTGGGGCTCAGcagctcctctcccctctccactcctccccaaTCTCGCATGGCTCCTCCCAGATGAGTCTAGCTAACCAGCAAGGGATGATGGGAAACGTAGGTGGCCAGTTTGGAGTCGTAGTGAATCCACAAATGCAGCAACACCGTGCCTTCCAGTTTCCCAGCTCAGGTATAAACCAGCAGCAGCAGGACGCAGGCTTCACAGGAGCCACCACCCCCCAGAGTCCCCTCATGTCCCCCCGCATGAATCACGCCCAGAGCCCCATTATGCAGCAGCAGGCCCAGGCCAACTCCTCCTACCAGCCCTCCTCTGAGATGAACGGCTGGCCTCAAGGCAACATGTCAGGAAACAGCATGTTCACACAACAGTCTCAAGCTCAGCAGTACATGCCTCAACAGTCTAATGGTGGAATGTACACCGGCACAAACGCAAACCTGAACATGAACATACAGGGTGTCCCCATGGCCTCCAACGGCAGCATGAACAACATGAACCAAGTCTCAGCAGGCCAGATGACCATGCCTACAGGAAGCCTGTCTTCCATGGACCCTGAGCAGAACTATTGCTGACCCCGGTCTATTGTTGGACAACACGGTTTACAAAAGGTCAACACCCAATGAAAACACTGGCATCCAACCAATCAAGGAGCTCCTGCAGTTCTCCCTGAACCAACCAACCGCATTCACCTTAGTGTGACTTAGGTCCTTCTCAAAtaggctacacacagacacagacacttgcgcacacacacacacacacacacacacacgtatatatgtgtatatatatataatggacTCATACTCACACAATATAGAAGCAAAACTGATCCTGTCAGCAGGCATCTGGTCAGATAAATGTATTCATTTCAGGGGATAGAATGCAGACTATGGCTCAACTCTGAAAATGCTCTCTTTACtcttttaggtattttcttaataACAATATTTTCTTTGTCTGGTTGTTTCTTTATATGCACAGGTAGGTGTGAGACAAAACGATATCACATGATTTCAAAAATTAAATAAGTGATATTATAAATGGTTTGAAGAGCATAAACTATACAATGATGTTGAATGGTTACATTGTAAAGCCTGACTAAAGTAGTCACTTGAAAggtttaaaataaatgttttacagGTATTTATAGTTTTTAAACTTGAGAAACTTTCTTTGTATGAAACTATAAAAAGGGGGCAAGTGTTAAGTTTCTTAACAAGTATCCCTTAATGGTACCTTATTGTGTCTATTTGAATTACATATTTTAGGTCCTGTAATTTCAGATGAAATTGTCAAATGAATCACCCTGCTGCGATATGTATGAAGGTGAATGTTCATAGTTTGTATATATTACAGTATAGATGAATTAAttaagatgtattttttttttctctagcCTGGTGTTACGACCACTGAAATATGACTTCACAGTCATACCGTTTGTGTTGGATTAACTAACAAAGGACTGTTTATCAGGGTTTCAACCAATTTGCGCAAGGATTTTTCCTTGCACTTCACCTCGACCTCATCACAATGAAAGGAATGGACAGACCTACCAACAGGCATAACTGAATACTTTAGGgtgctctgactttgctgatttTGTGTGCTGCTCTATTAAAAAAAAGCTGGAAGTGTAAAATGAACAGGTAATATGTATTTTTCAAGCCATATTCCTGTACTATTCCCATTTTTGTTTATCGTCTGTAAACACATAGCAAATATGAACTCATAGAATTTCTAATTTTTTTTAGTAAAATGTGAAAATTCCAAATTGTCTGCAAACACTGAAATGACGTTGGGCTCACATAATCATGCGTTTAAAAATGTGTGGCCAGAAAATATCTATTTTGTAGATTTGCACTGGTTATTATGATGTCACTCTGACGATGCAAAGGATATTTCTAATTGTTTGTGATGGCAAATTTCTCCCAATTAATTAAACATTTTCCTAAACAAGGCATTATTAAAGAGTTGGGCAAAGTTTGAAGATTAGGATGCTctgatataaatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2423553 lncRNA downstream 36611 23317578 ~ 23319702 (-) False LOC110508185
TU2423402 lncRNA downstream 181783 23092323 ~ 23174530 (-) True G2119432
TU2423362 lncRNA downstream 314986 23036810 ~ 23041327 (-) True G2119398
TU2423358 lncRNA downstream 317219 23033771 ~ 23039094 (-) True G2119395
TU2423355 lncRNA downstream 317902 23033230 ~ 23038411 (-) True G2119394
TU2423703 lncRNA upstream 204301 23612022 ~ 23613195 (-) True G2119699
TU2423778 lncRNA upstream 320392 23728113 ~ 23732967 (-) True G2119766
TU2423808 lncRNA upstream 373232 23780953 ~ 23781185 (-) True G2119795
TU2423809 lncRNA upstream 374831 23782552 ~ 23782983 (-) True G2119796
TU2423855 lncRNA upstream 449323 23857044 ~ 23858007 (-) True G2119831
XM_036966465.1 mRNA downstream 3151 23317575 ~ 23353162 (-) False LOC110508185
XM_036966466.1 mRNA downstream 3151 23317575 ~ 23353162 (-) False LOC110508185
XM_036966251.1 mRNA downstream 41870 23286506 ~ 23314443 (-) True LOC110508767
XM_021589552.2 mRNA downstream 102407 23246667 ~ 23253906 (-) True LOC110508766
XM_021589550.2 mRNA downstream 143806 23210838 ~ 23212507 (-) True LOC110508765
XM_021589572.2 mRNA upstream 36220 23443941 ~ 23588408 (-) True LOC110508770
XM_021589573.2 mRNA upstream 182316 23590037 ~ 23639543 (-) False LOC110508771
XM_021589574.2 mRNA upstream 182316 23590037 ~ 23639543 (-) False LOC110508771
XM_021589575.2 mRNA upstream 182316 23590037 ~ 23639543 (-) False LOC110508771
XM_021589576.2 mRNA upstream 182316 23590037 ~ 23639543 (-) True LOC110508771
TU2423555 other downstream 26698 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 748507 22594533 ~ 22607806 (-) True G2118200
TU2421096 other downstream 1408055 21942981 ~ 21948258 (-) False LOC110508740
TU2424934 other upstream 1257153 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 1322953 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 1736341 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 1790527 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 2459580 25867301 ~ 26069209 (-) True LOC110508791

Expression Profile