RNA id: XM_021589572.2


Basic Information

Item Value
RNA id XM_021589572.2
length 5249
RNA type mRNA
GC content 0.48
exon number 25
gene id LOC110508770
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23443941 ~ 23588408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGATCATCGTAGTAAGACTTACTGCAGGAGCCGAGACCAATGGAGCTGGCTGAATCGTCCTGCATCCTCCCCATACCTTccaacctccatctctctccctgattCTGTCTCTCCTTTCATAAAACAAAACGAAACCATAGACATGGATTGTTAACTACCGCATGTGTGTCATGGATCAAGAATGAGAAACATGGATTCGATTTACATTATTCTCGTCCTCCTTGCTCCCCAATCCTATTTTTTAGCCTCTGCAGACAGGAAATTCGGTTGTTTGTTTGAGAAGGAGTTGTGCACACCATATGAGATCTGTGTCAACGATGGAATGTTCGGGAGGTGTCAATCCACACCCGTTCCGGTAGCAGAGGTGTATACGTATGATGTGTCTCCATCTGTGGTTCAGCGCTTCAGGACTCTACTGCAGAAACTCACCCACAGAGGGTTGACCTGGGAGGATGAGACTGCCCAGCAGATCCTGTCCAAGGAGCTGTCTAAGCTGAGGAAGATCCCCTACAGACGCCTACAGGACTCCAGCCCCCCTGTCTACAGCAGCAGCAAATCCAGGCCCTCTACCCAGGCTATGGACTTAGGACACCGGAGGATCAAGCCAGTGGAGGTGGAGCTCAGTAGAAACCTCCAGAACTACCTGCAGCGTCTCGGCCTCCTTCCCCAGGCCGCCTCACCCGCCAGACCCAAGAGCCCCAGTAAGAGTGACCGTTACCCATCTGGGGTCTCCTCTGACTACTACTGGCCCAAGTCCCAGGGAGAGGCAAACTTCTCCCCACTGACGTCCTTCCAGCCTCCCTACCAGGACAGATCTTCTGCGGGGGATGGAGACCTCCTTGTGGCTGCTCTCAGACACTACCTGTCTGGGCAGGTACCATCTCAGACCGGGGTGTCCACCAAGGGCCCGGTCCTGCCCTCCTTTCGCCTACGCCCCTCCTACAGCAACAGTATAGACAGTACTGGGCCTAAAGAGACCTCTCAATCTCAAACACCTAACCTGGACAGACTTCTACTCCTCCAGACAGCTGGAGCCAGCCAACTCTCTGCTCCCAAGGACCCCCTCAGTACAGTGGATGagGTGTTCATCCAGAAGGTTCTGAAGAACGTGGGCAGACACGACGTGGACGTGGACGACCTGAGTCCTAAAGACCTGGACCAACTCTCTACGCTGATCACTGACGCCCTGCAGGTAGTGGATCAAGAACATACCCAAGCCCAGTCCAGAGCAGGACCCAGAGACCTGGGGGAGGAAGGGAACGAGGGGCCTGGAGGAGAAGGGCCTGGGgaacaggaggagaaggagaagagtgtacctccatccaccacagagaaAACGGCGGAGAGCACTCCAGTAGAGGAGGCTGTGGTCCAAGAGCGAcaaatggagggagacagagagccagcagaCTCCAATGACAAGCCCCAAGACGCCAGCAGCTTATTTGGCAAGCTGCTGGTGTACCTGGATAAGATTGAGTCCCCAGCCCAGAGAGAGTCCCCAGCCCGGGCTGGTGTGGGTGCAGGGCTGGGTGAGGGGAGAGGTGTTGGTCTGGAGAACGTACACAGCAGGACCACTCAGGCTGAGgTGGCGGTGCAGAAGAAGTCGACCCACTCGACGGACATGGAGGAGGTGGCTGCCGTGGAGGGCTGGATCCAGGCAATGGATCCTCCGGCTGCCAAGGTGGTCTACCAGGAGCCCCATAAGAAGAAAGGGAACGTCCAGGAGCTGCAGCTAGATGTCAAAGCAGCTGTGGCCACGAAGAAGACTGATGATGACTACGGTTATGTCATCACCAACACTGACGCATTGCAGACTGATGAGGGCCTCCACTTGATGGAGATTCTGACACGACGCGCCAAGCTGCAGATGACTGACTTCCTGGAGCTCTCagtGGTAGGCCCAGCTGTGACCTTCAGAGTGCGACCTAATGCCCAGAACATCAGCACCGCAGATGTGGCCAATGTAGCAGTTCACCAGAAGGATGCAGTGGAGAAGGAGGCCAAGGTGATCATTCTGGAGGCTGGAATCACAGATAGAAGCCAGATAAACCAGATCCCTACCAAGTACAGCACGGCCGAGTCCACCAAGTACATGATCCTGACAGTGGTGTCTATCCTGTGTATCGTGGCTGTGCTGCTGGCCTCCGCTGTGGTCTACTGCCTCCGACACCGCTCTCACCACAAGCTCAAGGAGAAGCTCACCAACCTGGGAACAGACACAGGCAGCGATGCTACCTCCACCTATCAGGAGCTGTGTCGTCAGCGGATGTCGGTCAAGCCGCCGGCGGAGCGCCCAGAGCCGATGCACAGTGTGTCGTCACGGCTCAACAGTGTGTCGTCCCAATTCAGCGACGGGGGGCCCATGGTCAGCCCCTCGGCACGAAGCTCCACCTCCTCCTGGTCTGAGGAACCCGTCCACTCCAACATGGACATCTCCACTGGACACATGATCCTGTCTTACATGGAGGACCACCTGAAGAACAAGAATCGTCTGGAGAAGGAGTGGGAGGCTCTGTGTGCGTATCAGGCTGAGCCCAACGCCTCCACTACAGGCCTGGGGGCAGGGAACACAAAGAAGAACCGCTCCAATGCAGTGGTGGCCTATGATCACTCAAGAATTACCTTGAAGGTTGAAAACAGCCACAGCAATTCAGATTACATCAATGCCAGCCCAATTaTGGATCATGACCCACGGAACCCAGCCTACATCGCTACTCAAGGCCCTCTTCCCTCCACGGTGGCTGATTTCTGGCAGATGGTTTGGGAGAATGGCTGtgtggtcattgtcatgctgacgCCCCTCACTGAGAGTGGAGTCAAACAGTGCTACCACTACTGGCCTGACGAGGGGTCCAACCTCTACCACATCTACGAGGTGAACCTGGTGTCGGAGCACATCTGGTGTGATGACTTCTTGGTTCGTAGTTTCTACCTAAAGAACATGCAGACCAACGAGACTCGCACCGTCACACAGTTCCACTTCCTTACCTGGCTCAACCAGAATGTCCCTGAGTCCAGTCGGACACTCCTGGACTTCCGCAGAAAGGTTAACAAGTGCTACCGGGGAAGGTCTTGTCCTATAATAGTCCACTGCAGcaACGGCGCTGGGAGGAGTGGAACATACATTCTGATTGACATGGTTCTCAATAAGATGGCTAAAGGTGCTAAGGAGATTGATATTGCTGCCACCCTAGAGCACTTGAGGGATCAGCGGCCAGCTATGGTCCAGACAAAGGAGCAGTTTGAGTTTGCATTGACAGCTGTTGCGGAGGAGGTGAACGCCATACTCAAAGCTCTTCCACAGTGAGAGGTTTACCCACTACCAAGCCTCAGCAGATCTCCCCAGGGACCTCCCTCCTGTTCTCCTTCTCTCGCCCACGCTTTCTTTCCcccactccttctctccacctctctgtcttTGTGGATGTTGTGCGAGAGAGCATGACCTGATCTTAGTCGtgtataataaaaaaaacatctatTGTGAACCTATGGAGCTTGTTTCCAAACAGACAATTTAGTGCATCAAGACTTTTACTGATTGAAAAACATGTTTATCTGTTAAATTACTAGAATATATCAATGACAGAAatattgtttttgtgtgtgtgtaaattattATCTTGGTCACAACATCTGTATCATATGGCATATTTAAGTTGAATATTTGTTTTTACTTTGATCCTATTATGCGGTGTACTAAATCATACCATGTAATGTGTAttaaaaaattttaaaaattaaaacTGCTTAATTAGGTCAAGTGAACACTGATAACAATGATGCTGATGTTAATTCTAGTTACCATAGTGATAATTACACCAAGCAATATGTGTTTCTTCAGCTTGTCCAGACCTGGACAAATAATTGTATGTTGTGGACAACGATTGTGAGTAAACTTAACTAATGTCAGTAAACTAAACTAGCTAATGCCTGCCTCAAGTAAAGCAGTTCTATGAAttggtgtactgtatgtacaatgAAAACGATATTGTCATTTTGTAAATAAAGCAGTTCATTTAATCTAGGGtctggattcaatccgtatcgccaAAGTATCACAGAAGATCTGGGTTCAAATGTGAAGGTCATTTCTAATTTAGTCGACATATCCAGCGTTTACCGTTAATGCAGTTTTACCGTGAATGCAGCCTCCGCAaccgcgggaacattgcctttcatTTTCAATCATGCTATAAAGTGGATCATCGGTGCTACGGATTGAATAAAGCCCTAGATGTACATGTAGCATCAATGGCTTAAGTGTGAATATAAGCTGCCACTGGATGTCCCTGTGTCTTATTAACAACTGAGTCCATatctgcgttccaaatggcaaccCTTTCCTTATATACAATAGATaacttattttgaccagagctctggtcaaaacaagtgcactatgtagggaaaaggttGCCATTTTGGATGCTGACCAGGCAGGTTTGTCTGCACTACAGGAGTACTGTCagctaaataataataatatatgccatttagcagacgcttgtTTCCTGTACAGTCACGCGGGCCTACAGCTCTACCCCAACACTTTCTGCTTTGACTAGACTCATGCCATTAGATCACAAAATCTTGGGTCAAGCTTTCATGTTTGTCCACTGGATTCTGTTTTTTGTACACCCACTATTTTCTGAATTGCAGATGATATGACCTGTTTTTTTTGCATACACTCGCACATGGCTTTTTGAAACTATTATTCCCCAAATGTATCTCCTTCAGCCTCAAAATATATCATGTCACCATGAAGAAAGCCAAGGATATGATTTACTATTTACTTTGACAAGCCAAGGATATATAATCATGCCATTTGAGACATTCATTTCTGAAGAATAGTAGTGCAAGTACAGAGGGGAAGATAGTGGATTGTTATATTACATATTGGCATAAACTTATTTTACCTATCACGGCTGTGCTTCCAAAATGGCACCTGATTCTCTTTCTATTACACTTCTTTTCCtttggtccctggtcaaaagtagtgcactataaagggaatagggtgccatttggaagacATTCAGAGTTAAAGCGGGCCATGTTATGTGTCCCATACTGTAACCACTGCAAAAAGCTTTCAACTAATTTATTGCAAGAGATGGCTGGTTTGACCATTAATTTGTATATATATGattattaaaaaaacaacagaaaataTTTTGTTCTATCAGTGAAGATAAACTATTGTGAATAAAGTCCCATTATTGATGGCGTGTTGTATTGCAA

Function

GO: NA

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2423553 lncRNA downstream 124239 23317578 ~ 23319702 (-) False LOC110508185
TU2423402 lncRNA downstream 269411 23092323 ~ 23174530 (-) True G2119432
TU2423362 lncRNA downstream 402614 23036810 ~ 23041327 (-) True G2119398
TU2423358 lncRNA downstream 404847 23033771 ~ 23039094 (-) True G2119395
TU2423355 lncRNA downstream 405530 23033230 ~ 23038411 (-) True G2119394
TU2423703 lncRNA upstream 23614 23612022 ~ 23613195 (-) True G2119699
TU2423778 lncRNA upstream 139705 23728113 ~ 23732967 (-) True G2119766
TU2423808 lncRNA upstream 192545 23780953 ~ 23781185 (-) True G2119795
TU2423809 lncRNA upstream 194144 23782552 ~ 23782983 (-) True G2119796
TU2423855 lncRNA upstream 268636 23857044 ~ 23858007 (-) True G2119831
XM_021589563.2 mRNA downstream 36220 23356313 ~ 23407721 (-) False LOC110508769
XM_021589566.2 mRNA downstream 36220 23356313 ~ 23407721 (-) False LOC110508769
XM_021589567.2 mRNA downstream 36220 23356313 ~ 23407721 (-) False LOC110508769
XM_021589568.2 mRNA downstream 36220 23356313 ~ 23407721 (-) False LOC110508769
XM_021589569.2 mRNA downstream 36220 23356313 ~ 23407721 (-) False LOC110508769
XM_021589573.2 mRNA upstream 1629 23590037 ~ 23639543 (-) False LOC110508771
XM_021589574.2 mRNA upstream 1629 23590037 ~ 23639543 (-) False LOC110508771
XM_021589575.2 mRNA upstream 1629 23590037 ~ 23639543 (-) False LOC110508771
XM_021589576.2 mRNA upstream 1629 23590037 ~ 23639543 (-) True LOC110508771
XM_036966916.1 mRNA upstream 103959 23692367 ~ 23741816 (-) False LOC110508186
TU2423555 other downstream 114326 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 836135 22594533 ~ 22607806 (-) True G2118200
TU2421096 other downstream 1495683 21942981 ~ 21948258 (-) False LOC110508740
TU2424934 other upstream 1076466 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 1142266 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 1555654 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 1609840 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 2278893 25867301 ~ 26069209 (-) True LOC110508791

Expression Profile