RNA id: TCONS_00055413


Basic Information

Item Value
RNA id TCONS_00055413
length 3091
RNA type mRNA
GC content 0.46
exon number 17
gene id XLOC_028566
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11099041 ~ 11106856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAAATCCAAATGCTGCTTTCTGATTTGTCACTGATTGTGTTTGATGATTTCCTCTGTTGTGTCTAATAAGGTAACAGTGAGAGTCATTGGCAGCtgtgagtctctctctctctctttaggaGCTCACAAGTGACACTTTCTTCATTCTGAGCAGAGAAGCAGAggacaaacacacagagaaagacaGACGGGGTGATgagaaaagatggatggatgcttGACACTTGTTTTACTCTCTATACTCACAATATCCAGATCTGATTTTGAGACTGTGAGGTTGTTTGGTGGTAACAGTCCCTGCAGGGGGACTGTAGAGGTTTTTCATGATGGTCAGTGGGGAACTGTGTGTGATGATGAATGGGATCTGACTGATGCTGAAGTGGTGTGTAGAGAACTGAACTGTGGAGATGCAATAGAGGCCTTGAGTATTGCTCGTTTTGGACAAGGATCGGGACCAATCTGGATGGATGAAGTGGACTGTAGTGGATCAGAGTCAACACTGAAAGCCTGTACGTCAAAAGGATGGGGTGAACATAACTGTGGTCATGGGGAAGATGCTGGAGTCATCTATCATAAATATTCTAGACTTGTTGGATCTCACTTGTGCTCTGGACGATTAGAGGTATTTCATGGGAACAAATGGCACACAATGTGTGATGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACGCTCAGATGTGGACACAAGAGATTCACTGCACAGGAAATGAGTCTTATATATCTTTCTGTCCAACATCTTCTCTTAAACACAACTGTACCCATGAAAAATACATTGGACTGTTATGTTCtgGTTATACTGATGTTCGACTGGTCAATGGTCCTGACTTCTGTTCTGGTCGAGTTGAACATCAGTACTACAATAAATGGGGCACAGTGTgtgatgcatgctgggatatgagAGCTGCCAGTGTCCTCTGTAAACAGCTGAATTGTGGGATTGCTGTGTCTGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCCGAATGTTCAATCTCTTCATGGAGTCGAGCTGAACGCTCTCATAGACGAGATGTTGGAGTCATCTGCTCTAGCCGCGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACAGCGGCTCATGGGGGACAGTGTGTGACGACTCCTGGGATATTAAAGATGCCCATGTGGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACCCATATGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGGGAAACATGACTGTCTACACAAGGAGGATGTAGGAGTCGTCTGCTCTGAATTTAAAGAGATCCGGTTAACTGAGGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGCTGGAATCAGATGGACAGAGACACAGTGAGTCTGATCTGTCAGGAGCTGAACTGTGGAAGATCTGGAGTTTTGTCTGATTCAACATCAAGACTGAAATCAGCTCGAAACTGGCTTGATAAAGTTAAATGTCGACTACATGACTCTACTTTATGGCATTGTCCATCTTCACTCTGGGGTCAAAACTACTGTGATGAAGATGAGGTGGCCAATGTTACTTGCTCAGttaagaaGAGTGATGAGTCCCCTCGGAGTCATCTGACATGTTCCGCATCTACTCACCAGAGACAGTGCTCAActcatgtTCCTCTCAGACTGCGTGGAGGGGATGGCCGGTGCTCTGGGAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACATCAGCGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGCCTTTGGTGCTGGTGAAGGTGTTGTGTGGCTGAACAGAGTCCAGTGCAGAGGGAATGAGCTTCACTTGTGGGACTGTCCTCTCTCCCTGAACAACCACACTGACTGCTCCCACAAAGAGCACGCTGGACTCACCTGTGCAGACTTGCCGGATATATCAGTGTCCACTACTCCTGCCACATCAGAATCATCTTCTGCTGCAGTTTCTCAGACAGTGAGCTCAAGATTAGTCTCTCCTCCACAAACTGGTCCAGAAACTCTCCCAGTCCCCCCAGTGCTGCTGATTGTACTGGGAGTTGTGCTCTTACTGCTCTTAGTGCCGCTGCTTATACTGATTCAGCAGAACAGAGTGATGAGGAGAGCTCTCTCTAAGAGGAGACACAGAACCACCACTGAGGCCGTTTATGAGGAGATTCAGCACAAACACCAACACTTCACTCACAGGGGGAGATTCAATTCTGAAGAACTGCAATCTGGGTATGAAGATGCAGACGAGTTTCTCTCAGAAAAAGAGTTCAAGACGGCTTATTATGATGATGTCACCAGCAACAGTGGTCTAGAAGAAAATATGGTGAAGGAAATCACTCCAGGATATTATGATGATGTCATCACTGACGGCTTGAAGCCAGATCTAGAGACAGAAGACAGACCTGAGAGTTATGATGATGTCATGATGAGTGAAGAGACCTCTGTTATTAAAAAAGTGGACAATCCAGAGTATTATGATGATGTAATTATTAATGGACAGAATCTTGATCATTTAACAGAGGGAGATCAGGAAGAGTATGATGATGTGAAGAACAACAATGAAGATGAGAGAAACCTCTTGGACTATGATGATGTAGAGGAGGAATCAACTAATGAGGGAGGGGTCATATGACTCAGTGGCCACACCCACTGCCTCTGTTGATGAAATCACATTATATTTACTGGAGATACTGAGAGTTTCTTATTTTACTATTGCATAAGTGCTGTTTTATCTAAtttgattttatatatgtataatctTATGTGCTTTGCaaatttcaata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000150764

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058100 lncRNA downstream 286754 10793666 ~ 10812287 (-) False XLOC_028555
TCONS_00055395 lncRNA downstream 286805 10790960 ~ 10812236 (-) False XLOC_028555
TCONS_00055396 lncRNA downstream 286867 10791967 ~ 10812174 (-) False XLOC_028555
TCONS_00055397 lncRNA downstream 302079 10793666 ~ 10796962 (-) False XLOC_028555
TCONS_00058099 lncRNA downstream 305988 10788536 ~ 10793053 (-) False XLOC_028555
TCONS_00055415 lncRNA upstream 17757 11124613 ~ 11125166 (-) False XLOC_028568
TCONS_00055416 lncRNA upstream 17757 11124613 ~ 11125650 (-) False XLOC_028568
TCONS_00055421 lncRNA upstream 72653 11179509 ~ 11186936 (-) True XLOC_028570
TCONS_00055422 lncRNA upstream 138476 11245332 ~ 11248285 (-) True XLOC_028571
TCONS_00055426 lncRNA upstream 295835 11402691 ~ 11404177 (-) True XLOC_028572
TCONS_00055412 mRNA downstream 502 11084209 ~ 11098539 (-) True XLOC_028565
TCONS_00055411 mRNA downstream 17080 11079058 ~ 11081961 (-) True XLOC_028564
TCONS_00055410 mRNA downstream 21169 11070864 ~ 11077872 (-) True XLOC_028563
TCONS_00055409 mRNA downstream 31710 11066785 ~ 11067331 (-) True XLOC_028562
TCONS_00055408 mRNA downstream 34968 11054309 ~ 11064073 (-) True XLOC_028561
TCONS_00055414 mRNA upstream 5724 11112580 ~ 11122638 (-) True XLOC_028567
TCONS_00055417 mRNA upstream 17758 11124614 ~ 11132617 (-) True XLOC_028568
TCONS_00055418 mRNA upstream 37744 11144600 ~ 11165961 (-) False XLOC_028569
TCONS_00055419 mRNA upstream 39762 11146618 ~ 11165611 (-) False XLOC_028569
TCONS_00055420 mRNA upstream 41786 11148642 ~ 11163112 (-) True XLOC_028569
TCONS_00055389 other downstream 437364 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 2511133 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 2957575 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055313 other downstream 3223111 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 3223281 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055432 other upstream 499902 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 501340 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 1168258 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 1306563 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 1488824 12595680 ~ 12595804 (-) True XLOC_028597

Expression Profile

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