RNA id: XM_036967146.1


Basic Information

Item Value
RNA id XM_036967146.1
length 5034
RNA type mRNA
GC content 0.56
exon number 37
gene id LOC110508187
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23787854 ~ 24045482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCGCCCTCCACAGGGCTCGAATGTGGTCTCGTGTGTGCCTCAATGTGTGGCAGCAACGTTTGTGTATCGCTCAGCAGCACTCAGAATTACAGTAGCAGTACATTTTCATACTACAGGGACAACCAACCATGGCTGGACTTGAATAAGAACGCGAGCAAAGCGATATTCGAATTCGCCCAAACGCTTTCCGCATTTCTATTTCTCACTCAACTCGCGACTCTTTTGCCTTATGCATCGGCGCTCTGCGGAGAAAGGACGGTCAGTGTTGAAAGACTTTACTGGACTCagtgaggagaagaagagaagagcaAGACAATTTTAAAGCAGAATGGCGGACCGTGATACTTTACCCCTTCCTTTGGAGGTGCGAGACAGACTTGCTGAGCTGGAACTGGAGTTATCAGAAGGTGACATCACACAGAAAGGCTATGAAAAGAAGAGGTCCAAATTAATTGGGGCCTTCCTTCCTAAGGCACCAGGTAAAGGGATGGACCCTTCTGTGCCCCACGAGAGGAGAACTCCTGTCACCCCCGGCTCCTCCTCTCGCTACCACCGCCGCCGCTCCTCTGGCTCCCGGGACGAACGCTACAGATCAGATGTCCACACAGAGGCTGTGCAGGCAGCTCTTGCCAAACAGAAGGAGCGTGGTAAGATGGCAGTACCCATGCCCTCCAAGCGCCGCTCCCTGGTCGTGCAGTCCTCCATGGATGCCTACACTCCCCCAGGTGAGGAACATATAGGACACCAAGacaCGTCGTCAGGCTCTGAGGAAGAGGGCTCCATGCAGGGTGAGGGCACACCCACCTCCAGCCAGGGCAGCATCAACATGGAGAACTGGATCAGCAGGGCCATCCACggctccaccacctcctccaccacctcctcctcctccacgcaGAGCGGAGGGAGCGGGGCAGCCAGCCGGCTAGCAGATGTCATGGGCCAGACACACCTCGGTAAGTCAGAGAACCACTCTACCCCTCCAGATGTCACCGGCTACACCACAGACTCAATACAGGTGGAGAGACCCCAAGGCTCCACCACAGCATCCAGGGCCACGCCAAAGTACGGCAACGCAGAGCTCATGGAGACCGGAGATGGCGTTCCAGTAGGTGGCCGTGTGTCGGCCAAAATCCAGCAGCTAGTCAACACATTGAAGAGACCTAAACGGCCTCCCTTAAGAGAATTCTTTGTCGACGATTTTGAAGAACTTCTAGAGGTGCAACAGCCTGACCCCAACCAGCCCAAAGCGGAGGGGGCTCAGATGCTGGCGATGAGGGGGGAGCAGCTAGGGGTGGTCACTAACTGGCCCCCGTCGTTGGAGGCTGCTCTGCAGAGGTGGGGCACCATCTCTCCCAAAGCCCCATGCCTCACCACTATGGACACCAACGGAAAACCACTGTACATTTTAACCTACGGAAAACTTTGGGTGCGGAGTATGAAGGTGGCCTATAACATCCTCCACAAGCTGGGGAACAAGCAGGAACCTATGGTCAGACCTGGAGACCGGGTAGCTCTGGTCTTTCCCAACAACGACCCGGCTGCCTTCATGGTTGCCTTTTACGGATGCCTACTGGCCGAACTTGTCCCTGTGCCAATTGAAGTGCCACTTACGAGAAAGGATGCAGGGAGCCAGCAGATAGGCTTTTTGCTGGGGAGCTGTGGGGTGACGGTTGCCTTGACGAGTGACGCCTGCCATAAAGGCCTTCCCAAGAGCACCACAGGGGAGATCCCACAGTTCAAAGgCTGGCCAAAGCTACTGTGGTTTGTGACTGAATCTAAGCACCTATCCAAACCCCCCAGAGACTGGTTCCCCCATATCAAGGATGCAAATAACGACACAGCCTATATTGAGTATAAGACGTGTAAGGATGGCAGTGTGCTGGGAGTGACGGTGATGAGGATAGCTCTGCTGACTCACTGTCAGGCCCTCACCCAGTCCTGTGGATACACAGAAGcTGAGACCATAGTGAATGTATTAGACTTTAAGAAGGACGTGGGGCTGTGGCATGGTATTCTCACGAGTGTGATGAACATGATGCATGTTATCAGTATACCCTACTCACTGATGAAGGTCAACCCACTGTCCTGGATCCAGAAAGTGTGCCAATACAAAGCGAAGGTGGCATGTGTAAAGTCCAGGGACATGCACTGGGCCTTGGTGGCCCACAAGGACCAGAGGGACGTCAACCTGAGCTCACTACGCATGCTAGTGGTGGCCGATGGATCCAACCCCTggtCCATCTCGTCGTGCGATGCGTTCCTCAATGTCTTCCAGAGTAAGGGGCTGAAGCCGGAGGTTATTTGTCCCTGTGCCAGCTCTCCAGAGGCCCTCACTGTAGCCATcaggagGCCGACAGATGACAGTAACCAGCCCCCGGGGAGAGGAGTACTGTCCATGCAGGGTCTGAGCCACGGGGTCATCAGGGTGGACTCTGAGGAGAAGCTGTCTGTTCTCACCCTGCAGGACGTGGGCACCGCCATGCCAGGAGCTCTCATGTGCGTCGTGAAACCAGATGGGGTTTCGCAGTTATGCAAAACAGATGAGAtcggggagctgtgtgtgtgttctgtcgcCACGGGGACGTCGTACTACGGTCTCTCAGGCATGACCAAGAACACCTTTGAGGTGTTCCCCATGAACAGTGTTGGGGCTCCCATCAGTGAGTACCCCTTCACCAGGACAGGCTTACTGGGCTTCGTGGGTCCTGGGGGGTTGTGCTTCATCGCTGGCAAGATGGACGGCCTCATGGTGGTGGGTGGAAGGAGGCACAACGCTGATGACATCGTGGCTACAGCCCTGGCTGTGGAGCCCATGAAGTTTGTCTACAGGGGGAGGATAGCAGTGTTCTCCATCACTGTGTTACATGATGAGAGGATTGTGGTGGTGGCAGAGCAGAGACCTGATTCTACAGAAGAGGACAGCTTTCAGTGGATGAGTAGAGTGCtgcagGCCATAGATGGGATCCACCAGGTTGGGGTGTATTGCCTGGCCCTGGTCCCCTCCAACACCCTTCCTAAAACCCCTCTGGGGGGAATCCACCTGTCAGAGACCAAGCAGCTGTTCCTGGAGGGCTCCCTGCACCCCTGCAACGTCCTCATGTGCCCTCATACCTGTGTCACCAACCTGCCCAAGCCCCGGCAGAAACAACCAGAGATCGGGCCTGCCTCTGTGATGGTGGGGAACCTGGTTTCGGGGAAGAGGATTGCCCAGGCTAGTGGCAGGGACTTGGGCCAGATGGAAGACAATGATCAGGcaagaaagttcctctttctctctgaagtGTTACAATGGAGGGCCCAGACCACTCCAGACCATGTGCTTTACACACTGCTCAACTCAAGGgGGACGATAGCCAGCTCGCTGTCATGTGTCCAGTTGCATAAGAGAGCAGAGAAGATTGCTACCATGCTGGCGGAGCGAGGACACCTGCAGGACGGGGATCACGTTGCGCTCGTCTACCCCCCTGGGATTGACCTGATCGCAGCGTTCTACGGGTGCCTGTACGCGGGCTGTGTGCCAATCACCGTGCGACCTCCGCACCCCCAGAACATCGCCACCACTCTGCCCACGGTGAAGATGATCGTAGAGGTGAGCCGCTCGGCGTGTATGATGACCACAGcggtgatctgtaaactgctgaGGTCGAAGGAGGCGTCGGCAGCAGTGGACGTCAGAACCTGGCCTCCTGTCCTGGACACCgATGATTTGCCAAAGAAGAAACCTCCTCTGTTGTACAAGCCCTCCAATCCAGACACACTGGCCTACCTGGACTTCAGTGTGTCCACCACAGGGATGCTAGCAGGAGTGAAGATGTCTCACACTGCCACCAGTGCCTTCTGCCGTTCTATCAAGCTGCAGTGTGAGCTGTACCCCTCCCGTGAGGTGGCTATCTGTCTGGACCCCTACTGTGGCCTGGGCTTCGTCATCTGGTGCCTTTgcagTGTGTACTCCGGCCACCAGTCCATCCTGATCCCGCCTTCAGAGTTGGAGGTGAACCCTGCTCTGTGGCTGCTGGCTGTCAGCCAATACAAAGTCAGGGACACCTTCTGCTCTTACAGCGTCATGGAGCTGTGCACCAAGGGCCTGGGCCTGCAGACCGAATCCCTCAAATCTCGAGGCCTGGACCTGTCGCGGGTCAGGACGTGTGTGGTGGTGGCAGAGGAGAGACCCAGGATAGCTCTGACTCAGTCCTTTTCCAAGCTCTTCAAAGACCTGGGCCTCCACCCACGAGCAGTCAGCACCTCGTTTGGCTGCAGAGTCAATCTGGCCGTCTGTCTGCAGGGTACTTCAGGACCAGACCCAACTACTGTGTATGTGGACATGAGGGCACTGAGGCACGACAGggttCGTCTGGTAGAGAGAGGGTCTCCACACAGCTTACCACTCATGGAATCTGGAAAGATTCTACCTGGGGTTCGAATTATCATCGCCAACCCGGAGACCAAGGGACCACTGGGAGACTCGCACCTTGGAGAGATCTGGGTGTGCAGTGGACACAATGCCAGCGGCTACTTCACGGTGTATGGAGACGAGGCCCTGCAGTCAGATCACTTTAATTCCCGTCTGAGCTTTGGAGACACACAGACAATCTGGGCCCGCACCGGATACCTGGGCTTCCTCAGGAGGACCGAACTGACCGACGCCAGTGGGGaGCGACACGATGCCCTGTATGTTGTGGGGGCACTGGATGAGGCCATGGAGCTGAGGGGAATGAGGTACCACCCCATCGACATTGAGACCTCCGTCATCAGGACACACAAGAGCATCACAGAATGTGCGGTGTTCACATGGACCAAcctcctggtggtggtggtggagttggATGGTTCGGAGCAGGAGGCCCTGGACCTGGTGCCCCTGGTGACCAACGTGGTTCTGGAGGAACACTACCTGATCgtgggagtggtggtggtggtggacatCGGGGTCATCCCCATCAACTCTcggggagagaagcagagaatgCACCTCCGGGATGGCTTCCTGGCTGACCAGCTGGACCCCATATATGTGGCCTATAacatgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2423809 lncRNA downstream 6617 23782552 ~ 23782983 (-) True G2119796
TU2423808 lncRNA downstream 8415 23780953 ~ 23781185 (-) True G2119795
TU2423778 lncRNA downstream 56633 23728113 ~ 23732967 (-) True G2119766
TU2423703 lncRNA downstream 176405 23612022 ~ 23613195 (-) True G2119699
TU2423553 lncRNA downstream 469898 23317578 ~ 23319702 (-) False LOC110508185
TU2424084 lncRNA upstream 134737 24180219 ~ 24180498 (-) True G2120036
TU2424745 lncRNA upstream 316222 24361704 ~ 24361903 (-) True G2120613
TU2424747 lncRNA upstream 319085 24364567 ~ 24366627 (-) True G2120615
TU2424936 lncRNA upstream 619392 24664874 ~ 24669566 (-) True LOC110508783
TU2425098 lncRNA upstream 817609 24863091 ~ 24865205 (-) True G2120928
XM_036966917.1 mRNA downstream 36008 23692367 ~ 23753592 (-) True LOC110508186
XM_036966916.1 mRNA downstream 47784 23692367 ~ 23741816 (-) False LOC110508186
XM_036966918.1 mRNA downstream 47784 23692367 ~ 23741816 (-) False LOC110508186
XM_021589575.2 mRNA downstream 150057 23590037 ~ 23639543 (-) False LOC110508771
XM_021589579.2 mRNA upstream 8785 24054267 ~ 24092088 (-) False LOC110508773
XM_021589578.2 mRNA upstream 8785 24054267 ~ 24092089 (-) False LOC110508773
XM_036965929.1 mRNA upstream 8785 24054267 ~ 24092203 (-) True LOC110508773
XM_036967121.1 mRNA upstream 100460 24145942 ~ 24159318 (-) True LOC110508188
XM_021589582.2 mRNA upstream 184800 24230282 ~ 24250601 (-) True LOC110508776
TU2423555 other downstream 459985 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 1181794 22594533 ~ 22607806 (-) True G2118200
TU2421096 other downstream 1841342 21942981 ~ 21948258 (-) False LOC110508740
TU2424934 other upstream 619392 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 685192 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 1098580 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 1152766 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 1821819 25867301 ~ 26069209 (-) True LOC110508791

Expression Profile