RNA id: XM_036965929.1


Basic Information

Item Value
RNA id XM_036965929.1
length 8381
RNA type mRNA
GC content 0.42
exon number 17
gene id LOC110508773
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 24054267 ~ 24092203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCATGTGGCCTGTGATCCACACCGTTGATCACGAGTGGATCCGTGAGCCACTGAATTTCGACCAACCGAGGAGCATGTTCATTGTGATTACTTGGTGACAAAGAGACTTCTCCCTGAGGAGCCAAGAAGTAGACGGCTCATGACTTCTGACCAGGATACAAAAGTTGTAGCTGAACCACAGGTGCAGCAAGTACAAGAACCAAAAGAGAGCTCTCATCTGGAATCTGCCAAGGTTTCTGACCTGAACCCCAATGCGAAAGCATGGGCCAATCACATGCTTAACCTGGACACCACCACTGGGACTGCAGATCCACCTGCTCTCCAGCCATGGAAGGACGGCTGCGTTAGCAGCTCCGCTAACCCTGGGCCAGAAGGCTGTGAAGCCAGCGAAGACAAAGTGTTTGAAGGGACCCTACTAGATGACCCAGATGAGCCGCCGCCGGTGGCGGTGATACTGGCAGAGCCAGCTCCCATGGCTGCCACCGTCACCCTGGAGTGCTCCGACCATGCTGCATACCCAGAGTCTGGCCAGGAGGAAACTCACACAGGCAGTGAGACTCAGCAGGAGATCCCTCAAGAGGACCTCCGGGAACACCTGAAGAAGACCCTGGAGTTCTGTCTTTCCCGAGAGAATCTGTCCAGCGACATGTATCTTATCTCTCAGATGGATAGTGACCAATATGTACCAATCGTGACGGTAGCTAATCTGGACCACGTCAAGAAACTCAGCACGGATGTGGAGTTGATCGTCGATATCCTACGATCTCTGCCGTTGGTCCAGGTGGATGAGAAAGGGGAGAAGGTGAGACCCAACCAGAACCGCTGCATTGTCATCCTCAGAGAGGTCCCTGAGAGCACTCCCATAGAGGAGGTCGAGGCTCTTTTTAAAGGAGAGAACTTACCTAAATTCATCAATTCTGAGTTTGCCTACAACGACAACTGGTTCATCACCTTTGAATCGGAAGCAGATGCACAACAGGCATATCAGTATCTTCGTGAAGAAGTGAAAACCTTCCAAGGGAAGCCTATTAAGGCACGGATAAAGGCGAAGGCAATCGCTATTAACACTTTTATGCCAAAGAATGGCTACCGCCCGGTGGAGGTTCACCCTTACgctcagcagcagcaacaacgcTACACCTCCTACTACATACCTCCAGTGTACAGCCCTCAGCAGCAGTTCCCCCTCTACAGTCTCATCACTCCACAGGCCTGGTCAGCCACCCACAGCTTCATAGACCCTTCGCTGGTTACCCAATTTCACAACACTCAATTTATCAATGGATTTACAACATCCCATAGTTTTAAACCAGCGACGTCTCCTCTTGCTGGTGTTAGGCACTACTCTCCCAGGAATAGGAATCACACTCACAGTAAACCTCACCTGAGGCCCACAATACCTATCATGGACCAGCGCGGCACAGGGCTCCTAGACAGCCCCACCATCTTCAACTTCCCCACGGAGCGAATTCTGAACGGGGTACCGCGAGGTTCCCCCCAAATGACGCGCCTCCCGAGCCAGAACAGAACCAGGTTACCCCCCTCCACCATGACCTACCCCAGGAGAGACATCAGTACAGGTCGGTTGGAGCCCGTCAGCACTGACTACTCACTGGGCATGGGCCGGGGAAGGACAAATATTTATGGTTCTAGGAAAAAGAGGGACGACAACAAGTTTACAAAAATGGCTACCCAGTCGCCACCCCCTCCTCAGAAGCCCCCGTCCCCCAGCTTTGAGCTGGGGCTCTCCAGCTTCCCCCCTTTGCCTGGGGCCGCAGGCCACCTCAAAACCCCTGACGACATGTTTGAGAACAAACTGGCCAGCATGGTATTAGGAGCCACAAAGGACAGGAATGTAAGCGTTGATGCCAGCTCTGCAGGTGCCCTCCCCTCAGGAGGACCCAAGGAGCCACTAAGGACAGTCACTTCTCCACAGCCCCCGAACCTCCTGCCCACTGCCCCCCCGAACCCAGGACCAGCCTCTGGCCCTGTCCATGTTTCCTCCCAACCTGCAGAGGAAGTGAATGTTCTGGAGGTGAATCAGGAGACTCAGGTCTCTATGGAGCGCGTCACTACCGCTCTGTACACTGCTAGCAAATCTGTTCAAGTCAATGGTACTGCTACAGAACTACGAAAGCCCTCTTACGCTGAGATCTGCCAGAGGATTAAAGACCACGCTCCGACACTACAGGCCCCTAAAGAGGCCAAACCAGCAAGTAGCGCTGCCtccgcaggagaggagaggaagtgcaCTGACGCAGCCCCAGGGGACAGGGGTGAGCCAAAGGTCCCCCGAGAGACATACCCATGCTCCTCCAAGTCTGCCACCCTCGGCAGACCCCGAGAGGTCCGGAGACCGACCGGCCGGTGGCCTTCACCACCCCCCAACCACCCAGGGAAGGGTGCCAGCAGCAAAGATCTCAACACTCCCCCAAAGTCCCCGCAGTAACCCCCCCACTGCAATCAAGTCAATTTCAAAACAAAAACGTGAGAGTGAAAGAAATCTGAAAAAGTCAGGGCTATTCAAATACAACCTATTCCAAAATCACCAGTCATTCATAGCATAGAGAGGATGCCTTTCTGGATCAGGGCTTTCAGACAATAGCACTTTAGTGTGCATATAGAGCACCGTTAATCatttttacttatttatttttgGAGGGTTTATTTTTTTTCATTGCTTTTGTTATTTAGTGTCAATCTGAAAACTTACTCCTGTTCAGATTAGTGGGATAAATTCATATGTCCAAAGTATTGCGAGGTCATCAGTGGAAGCCAACAACGGGTGAATGAAAGGAAGCAGATGAGGAACAGAGTAGCTGTTGCCATGTCATTCTGTATGTCTTGTATGCAGTCCTGTTAAGTGGTGATGTGATTCCATTGCCGGGTGTGATCACCATATCAGTCAGACAagatggctgtgtcccaaatggcacccaaatcaatatatagtgcactactttcgatcaaaagtagtgcactacatatgaaATAAGGTACCATTAGGGACGCATCTATGATGTGTTTTACATATTTGTGTTCATATTCAAGGTCAACTAGTCCAGGCTCATTTTACAGACTTAACTGAAATCCTCAGAAGACTTCATTTCTGAGGGACTTCACCACCGGTGTCATTTATCAAAACTAGATTACCTTTTTGCCAACATGGAACACTTTATCTCGTTAGAATACAAGCATTTGAGGAGAATATGTTTATTTGCATACTGGTTTTGATCGTTGGTACAAGTACTACTTGTTGCGTGCTGGTGGTTTTGAGAGCGCCTTAGACTTTCTTTCTGGTGTTTCTTGTGGTAAAGAATTCCATTTAGTCGTTTTCTGTTGTCCAATGCAGGAATCTGTTTCCTAGCCGTGTAAAGCACATAGCTAGTTAGTCCTCGTAGAGAGCCACTATCGGGGTCAGTAGAAATCTACATGCATTTTGATCTTGGAAAAAGCAGATGAGGGTCGTTCCAGTaattcggtgccttttgagaTGTGTAACTTTGTCCAATTTAATTTCttcactttattttttactttctgtcataaagagcacgtAAAACTTAACGCATTTTCCCATCTCAACGTTAAATACAACATTACTATAGTAAGTGACAGGGTTGACTGTCGCAGGGTTGACAATTTCATCTTAGATCAGCTGTGAATCCCATATTGAAAGGTGGAATGAAAGTTTGTTGTGtaacagggagtggcaattgaTTGCCACCTTCATAAACATTTTTAACGTAagatttctagcctgtctatctatgggtaacagggttgacatggtATGCTTGACTCGCTCAGTTTtctaccacaaaacaccagaaaatggcaaAAGAGTAGAACcggctcacctgcttttacactgtgATTTAACTAGATGTTCATGTTTCTTttgggaaaaaaaaacatttaaaaaaggaaTAGTTTTACTATATTAAAATGATAGTTCAGTTcgcgtaacagggttgacctttaAATTGAGGGACACAGAAAatcacaaataaaaaaataatcttCAGATATGACTGTCAAAGCAACAAATTAACTAAGTCACGGAGGGATTTTGAATTTAGGCACTAACAAGTCTTCATTCATATAAAGAATTTGATTAATTGAATTCCCATggggtctatattaaagggcacttcatttattATAACAcacttttaaaattcaatattggtgcaccaTTTATACTTTAAATATCAAAGGGGTCCAAAAGTTTAtcatttcgtggaacgacccaTAAATTCATCACATGGTGTCGCTTGGTGCCTCTTGTAGACTATTTTCTTTCTTTACTATTTTGCTGTGAAACAAGCATGTCGGACTAGTTCTGCGGGCACATACGTTGGCAATGGATAGGCTACAGCGGAGGCTGCTGCGTGGAGGAtgactcataataatgtctggaacggtgcgaatggaatcaaacactTAGAAAACaagtgttttgatgtatttgacACCGTTTCACTCCAGCCATTAACACacgcccgttctccccaattaaggtgccaccaacctcctgtgctcagCTATTAGGAGTCGGCAGTAGGGTTTTGGCAGGGTGTAGTGACTTCATTCAAACAGtgggatgttttattttatatagcTATGGCGCTAGCTAGAGGATGAACCTGGAACTTGCTACTTCAAATAATCTGGTACTGTACCTAGATAATAATACTTGATACATGTTGTCAACTAAACTTTGCACTTTGTTTTGTTTCTGGATTAATTAAGAAATCCATATTTTACCTACATACAGAAGCAAAAGGGAACCTAACATGTAAAGACAAATATGGAAAGGTCTGATGGTCACATAAGTAATCCCTTTACAATTTCAGCTATACAACCAATAGATTTTCCCCCTAAAGAATGAAATGTCTTCTTGCCATTTGACTTGTGCATTATGTTGTGACAGGATGATCAGCTTTCAGAATCTCTCAAATGTTGACTAATTGTATTAACCTCTATGCGGATAAATTCACACGAGTTAAACTTTTTTGTTTACTCCCATGTAAATGCCTACAAGACATACTTCCGTGCATGCTGATAATAACAACTTTAATCTTGGTGTAGATAGTCATTTTATTTTGTGCACACCCTATGGAGTCGCACTCATTTTATTTGATTGTTTTGCTTTTGAGCTAGTCATTTGTGAAACCACTGGTGCGTGGTGTTTTTTGAAGCTGTTCTCGCTTCTTATTCAGTATTACAGTAGTTAATTATAATGTGGGTGTACACCTTAGAGAATGTGTACACCTGGTGGCTCAAATGGGAAAAATAAGTGAAATTGGTTAAAAGGAAGAAGTACGACATTCTTTCCACTACAAATGTTATATTTGAAGGTAAACCATGATGCAGCCATTTTAGAAATAAGGTATTGCTTTATTCATTGGGTGACAGTCAAACGAGTAGTGAACTGGACCCTGTGAGAATCCAGTGAGTGAATGAAATGACCTTTGACCTGTTGGCATACTGTGAACCTGAGCAGCTTATCGATGAGTCCTTTCAGTTTGGGCAAGAAAACGTTGGGCAGAGGGGGCAGCACTCTTGGGTCATTCCAAATCCTTCCCCCCTCACATACAGTAGAAGTGCCCCTGTTCACTGCAGGACTTATTTTTGGCATGCTTTTTCTCTTTTTAGAATGCCTTCTATAGATTTCTCCTGGCTCTCCATACAAAAACCATATAGCTTCCAAATTCCCCTCTGTACTCTGCATAAATGTATAAGTAGAAAAAAATAACTCATAAGTGGAACTTGTGCACTTCTTTAGTGTCTCATTGACGTCTTCCTGCAACAAGGAGTTGAATACTCTGCTTAGATAAGAGGACTCATTTTGGAGAGGAGACATTGCCTAAGTCACAGAATGGCCTGTACTGATAGTCATTGCTGCTTTTGATTTTGATGCTTTTGGTTtgcaaaaacatttatttagttTGATTTTGAAAGACTGGGATGCACTTGGGTGGACAGTCTTTAAattgcagtttttttttaaaaatttgattttatttttttttctgagaTGGTATAAAAGACATGATGCACCATATCTGCTTATTTATAAACCAATGCTGTTTATTCCATGAGAGAtcataaaaatgtttatttttaagaAGAAATATACAATATACAACTGTATATTTTCCATCCAGTGTTTGAAAAACTTGAATTTTATTTAAACTTGAAAATGACTTTGCCTTAACTTTTATATGAGACAATGTAGAGTTTATTTCTTTTCAAACCCCAAAATGTTACTAAGGGTAACACATCTAAATGTTTAGTCATACCAAACATCACAAGTCTTACTAGGTCTTAAAGTACAAATCTagcagcatttttttttttggggggggggttgtaaaaTTGTAAGAAAATGATCTAATTTGATTAACCTTGTTTCTACTTCCTATTTTCAGTTGTTTTGGGGAAATATAAATCCTGTAAATGCAAAATAGTAAATACTGTATCAAATATGTGCACTTTGAAGTGTGTGCTTTGCTTGTACAATTGTAAATAATCTGAAAAATAGAGGTACcttaaaatgatttaaaaaatatatatattgatctTGTTGAAATATTAATGTTGCTTTTTGAGCTGGATGTAGGATAAAAACTAAATgttgtgatttgattttgaatattttttttttctatattttttttatattgttcTGATGTGCAGAATTGCTTCTCCCTCACTTTGCGACAGGGAAGGTTGTCTGATTGTAACTTTTTAAATGTCATTCTCATTCCATGTCCTTGTGTTTTTCAACCCCTGGTAGACAATGTTTTCTGTTGGCCAACCTCTTCACTGTGCACAGTGAGAAAAGGGAAGAACCTACCTGTCGTACAAACACACATCCTTAAATGAAAGCACAGTCGGTACTATTATCTGACAGACTGTGCTTATAGCAGTCTGTGTGATTTAGCCCATACAATAATTCTTTATCACAGTAAAGCACATTTTTAAGCACAGGAACATCAAATCTTTCTCACACAACCAATTTCAAGTCCATAGCAGCATACTGTATACTTGTACCAGACATAAACCTTTCATGTTTGGAGGGAAGGTGATTTAAGCATTGTTGATATTCTGTTTAGTTTTTCTTTTTGACGGTTTGTTTTTCATGACGTTGTACGTCAACTGAACTTTCGTAGCCCCCAGCACTAAACTTGACAAATAAAAATTCCTTTGGTAGGCTTTACCAGTGTTTAGACTCAAGTATAATAGTGTAGATATTTGTACACATTTCAGCAAGAAAATGTGTTTTCTGGCACATACTGTATAACATACTGTGCATTGTCTTTTTATCAGTTGATCACACATGTGGACTGCATTTATCTGTGCCATTAATTTGTTTCAACCTGGTAGTTTGTTTGACTTGTACTTTAATTAAACACTTGACATTATAATTGTTACTGAGGAAGTGTAGCTGGTCTTGAAACTATATAACTGGGAATAATACTCTGATACCACTGACATTAGACAAAGTACTCATAGCAACCCGCATCTGATCTGGCTAATGAAGTCTAGGTATGTACATTTTAAGCTAGTCTATGCTAGTAGGCCTTTCTAATGCAAAATGCTAATACTGTTGTCTTTGCAGATTGGGTATTGATATGTTATCCGGCTGGGCACTGAGTTTGTATGAGAAAGTGTTTGTTTGCGAGAAGTTAACCAAACACAACTGCAAAATTGACTGACAGTTGAAGTAAAGTAAACCAAAGGGTGATTAGCCAGCCAGGTGTGTGCAGCATGATCTGAAAATGATTGTTATTGGTTTCTCTCTCCTGAAGATGATGGCACTGCTTACAGTATGAAAGTGTTTAACTTTTTATTTTGCGCGCACTACTAAAGCCCTGTTGTAATGTTCGGCTGTTCTTGTGTTACTGTGCACAGACAGTCTCTCGTATCAAGCGGTCTCGTTCTCCCTGCCCAGTTCGCTTCTTTCTGTTACGTCTCACCAGTTTGATAGTGCCATGTATTTTTTGCAAAGGTTGCAGCTTGTTGTAAATTGACTGTAAAGTGATGTAACAATGCACCAACTGACTGGAATGAGACGAACCAATTGTCTCACTATCAAATCACTGTGTTAAATTAACTCATTTTTACGCTAACAGCAGTGGACAATCGATGACTTGATGGGGAGAATAACCTAACGGTAACAGTTGTTCATCGAGGTTTCTTTGAGAGGGCTTTTGATTTGTCTTAActtttcttccatttaagactgGAATCAAGCGTACATGTCAACTATTGATAATTTAAGTTACTCTTGTGTCATGATGTAAAACTGTCtaatttggagagaaaaaaatgtagCTTATTGAAAAATAAAGATTTAGGCACTGTTAA

Function

GO: NA

KEGG:

id description
K18763 LARP4; la-related protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2423855 lncRNA downstream 196260 23857044 ~ 23858007 (-) True G2119831
TU2423809 lncRNA downstream 271284 23782552 ~ 23782983 (-) True G2119796
TU2423808 lncRNA downstream 273082 23780953 ~ 23781185 (-) True G2119795
TU2423778 lncRNA downstream 321300 23728113 ~ 23732967 (-) True G2119766
TU2423703 lncRNA downstream 441072 23612022 ~ 23613195 (-) True G2119699
TU2424084 lncRNA upstream 88016 24180219 ~ 24180498 (-) True G2120036
TU2424745 lncRNA upstream 269501 24361704 ~ 24361903 (-) True G2120613
TU2424747 lncRNA upstream 272364 24364567 ~ 24366627 (-) True G2120615
TU2424936 lncRNA upstream 572671 24664874 ~ 24669566 (-) True LOC110508783
TU2425098 lncRNA upstream 770888 24863091 ~ 24865205 (-) True G2120928
XM_036967142.1 mRNA downstream 8785 23787854 ~ 24045482 (-) False LOC110508187
XM_036967121.1 mRNA upstream 53739 24145942 ~ 24159318 (-) True LOC110508188
XM_021589582.2 mRNA upstream 138079 24230282 ~ 24250601 (-) True LOC110508776
XM_021589593.2 mRNA upstream 243964 24336167 ~ 24343111 (-) True LOC110508778
XR_005040229.1 mRNA upstream 395192 24487395 ~ 24490326 (-) True LOC118944850
XR_005040276.1 mRNA upstream 453460 24545663 ~ 24547396 (-) True LOC118944874
TU2423555 other downstream 724652 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 1446461 22594533 ~ 22607806 (-) True G2118200
TU2421096 other downstream 2106009 21942981 ~ 21948258 (-) False LOC110508740
TU2424934 other upstream 572671 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 638471 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 1051859 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 1106045 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 1775098 25867301 ~ 26069209 (-) True LOC110508791

Expression Profile