RNA id: XM_021589582.2


Basic Information

Item Value
RNA id XM_021589582.2
length 3769
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC110508776
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 24230282 ~ 24250601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGATGCCACGTTAACATGTCCACTTCAATTTCAGTGTGTCAACTACTGACAGCATGAGAGGATATGGATGTGCAGCAAACCAAATTGTGCTGACGTTATGATAGTAAAGCTGTTCAGCGTATACTATTCGGATATGCACGTTCATTGATAAATACCAATTAGATATATTGTCACTAAATTAAGGAAATGATGTTTAGGCAGAGTAAAACAGTTCTCCAGAAACTTCGAAATCTACGTTTCCAGTGGCAGAATCCTTCATGGAGGTTCAGGAGCACCTCAGCAACAGAGAGGGCATTGCAGTACCAGGCAGGACAGAAGATCCATGGCTTCACAGTTAAGGAGGTGGTTACTGTTCCTGACCTGTTCCTTACAGCTGTCAAACTGACCCATGACAACACAGGCGCCCAGTATCTACACGCAGCTAGAGATGACAAGAACAATCTCTTTAGTGTTCAGCTCAGGACGACCCCAATGGACAACACAGGGGTCCCACACATCCTGGAACACACAGTGTTGTGTGGCTCAGAGAAGTACCCCTGCAGAGACCCCTTTTTCAAGATGCTCAACAGATCCCTCTCCACCTTCATGAACGCattcacagcTAGTGATTTCACTATGTATCCCTTCTCCACACAAAACGGGAAAGACTTCCAGAATCTCCTCTCCGTGTATCTGGATGCAGTGTTTTTCCCTTGTCTACGAGAACTTGATTTTTGGCAGGAGGGATGGAGACTGGAGAATGAAAAACCTACAGATCCTACTTCCCCTTTGGTCTTCAAAGGAGTTGTCTTCAATGAAATGAAGGGCGCTTTTTCAGACAACGAGAGGGTATATGCCCAGCACCTGCAGAACAAGCTGTTTCCTGACCACACATACGGTGTGGTGTCTGGAGGGGAACCCCTGGCCATCCCTGACCTCTCCTGGGAACAACTGAAGCACTTCCACGCTACACACTACCACCCCAGCAATGCAAGGTTCTTCACCTACGGGGATCTGCCCTTAGAGCAGCACTTGAAACAGATCCAGGAGGAGGCTCTGTCCAAGTTTGAGCGCACTGAGCCTGACACTGCTGTCCCTAACCAACCCCACTGGGACAGGCCTagagaggaccatgTGACCTGCAGTCCCGATGCTATGGCTCCTGATGCAGCCAAACAGAACACGCTGTGTATGAGCTACCTGCTAGGAGACATCACAGATACATTTGAGGGTTTCACCCTGAGCCTGCTGTCCTCTCTGATGATCTCTGGACCCAACTCTCCCTTCTACAAGACCCTCATAGAACCCAAGATAGGAACAAACTTCTCCTCTGTCGTAGGATACGATGGGAGCACCAAAGAGGCATCATTCAGCATAGGCTTGCAAGGAATGGCTGAAGAAGACACTGAGAAAGTCAAGCAAATCATTGTCCAAACCATTGATGAGATCATTGCCAATGGAtttgaggaggagaggatagaggccCTGCTTCATAAGATTGAAATCCAGATGAAACATCAGTCTACCAGCTTCGGGTTGTCACTGGCCTCATACATAGCTTCCTGTTGGAACCATGATGGAGACCCGGTCCAGCTGCTGAAGATCAGTGACAGTGTGACCCAGTTCAGAGAAGCCCTGAAGGACAACCCTCGCTTCCTCCAGGAGAAAGTCCTACACTACTTCAAGGACAACACTCACAGGCTGACTCTGTCTATGAGTCCCGATGAGGCGTACCTGGAGAAACAAGTCAAAGCAGAGGAGGAGAAACTCCAGAAGAAGGTACAGGCTCTGTCTGAGAGTGACAAGAAAGACATCTATGAGAAAGGTCTTGAGCTGCTATCGGTTCAGAGCAAGATCCAGGATGCCTCATGTCTCCCTGCCCTGAAAGTGTCTGACATTGAGCCAACGATAGCAGTCACACCTGTAGAGATGGGCACTGCAGGAGGTGTCCCTGTGCAGTACTGTGAGCAGCCAACCAATGGGATGGTCTACTTCAGGGCTATGTGTAGTCTCAACACCCTCCCTGAAGACCTCAAACTATATGTGCCCCTCTTCTGCAGTGTCATCACCAAGATGGGCTGTGGAGGGCTGGACTACAGGCAGCAGGCCCAGCAGATGGAGCTGAAGACTGGAGGCATGTCCATCTCCACATCAGTCAACCCTGACTACTCTAACATGGACATGTATGAACAGGGAGTCCTCCTCTCATCTTCCTGTCTGGAGAGGAATCTTCCTGATATGTTTCACCTGTGGAGTGACATATTCAACAGCCCGCACTTTGATGATGAGGAGCGTCTGCGTGTGCTGGTCATGATATCGGCTCAGGAACTTGCCAATGGGATCTCTTACTCTGGTCACATGTACGCCATGACGAGGGCGGCTCGCAGTCTGACCCCAACAGGAGAATTACAGGAGACCTTCGGAGGGATGGAGCAGGTCAAGTTCATGAAAAGGATTGCGGAGATGCCAGACCTCACCCAAGTTCTACGGACACTTCCTAGAATAAAGAGACACATTCTCAACCCACTGAACATGAGATGTGCGGTCAACTCAACTCCTCAGAAGATGTCTGATGCCGCTGGACAGTTGGATAACTTCATGTCTAACGTTGCTTCCAATAAGAAGGATCGCAAACCCGTCCGCTCCGATATCACTGAGAGACCTCTTGACTCACTGGCAGCTCCTGGATCTGGCCCAAGTAGAAAACTAATCACTGAGCCCAACTTCAAGCCCTGCCAGATGAAGACATTTTTCCCAATGCCCTTCCCAATCAACTTTGTCAGCGAGTGTATCCGCACCGTGCCCTTCACCCATGAGGACTATGCGAGcctgaATATCCTGTCCCGGATGATGACTGCTAAGTACCTGcacagagagatcagagagaaggGTGGGGCCTATGGTGGAGGGGCCAGGGTGGGAGGAGGACTATTCACCTTCTATTCATACAGAGACCCCAACTCGGTGCAGACTCTGTCAACCTTCCGTAAGAGTGTGGACTGGGTCAGATCAGGACAGTTTACCCAGCAGGACATCGACGAGGCCAAGCTGTCCGTGTTCTCAGCCGTGGATTCCCCCGTCGCCCCCTCCAATAAAGGTATGGGCCGTTTCCTGAGTGGAATCACAGATGAGTTGAAACAGGCCCACAGAGAGAGACTCTTCGCTGTCACAGACAAGAGCCTGGTCGATGTGGCTGGCAGGTACCTTGGCATTGGACAGAGGACATGTGGAGTTGCTATTCTTGGTCCTGAGAATGACATCATCAAGAAAGACCCCTCATGGGTGGTAAAATAACATCAGGGAAATGATCCACATGTATCTTCTCCAATTAAGAGACTTCAGATACACTGTGTTTGATGGTAAGTGATCAGTGGTACTTGATTGTCCTAAAAAACTGGACTGTTGCTACAGTGTTATAATATACATTTATTATTGAATTAACCAGACAGTTGCTTTGGTTTTTGATGTTACGGCGCTGTGTTACAAAGTTTAATATTCCATTGAGGTATGTGTGTAAAGCTATTTTGTAGGCAAACTGAATGCGCACAACAGTAAACAGATAATTTCATGTCTAACCTCACCTGAATACCATATTCATAATGTATCAAATATGACAACGTACATTTCATTCAAAACATCAGAATTTCTTTATGGCATAGAACCCTACCTCTGGCTTCAGAATGTGTACAAGTATGTACAGCGATGGCTCCTGTTTACTGAAATATTGTATTTCTATAGAGTACATGTGTATACAAAAATATGACCATTAAATTATCATGATGTTGTAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K06972 PITRM1, PreP, CYM1; presequence protease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2424084 lncRNA downstream 49784 24180219 ~ 24180498 (-) True G2120036
TU2423855 lncRNA downstream 372275 23857044 ~ 23858007 (-) True G2119831
TU2423809 lncRNA downstream 447299 23782552 ~ 23782983 (-) True G2119796
TU2423808 lncRNA downstream 449097 23780953 ~ 23781185 (-) True G2119795
TU2423778 lncRNA downstream 497315 23728113 ~ 23732967 (-) True G2119766
TU2424745 lncRNA upstream 111103 24361704 ~ 24361903 (-) True G2120613
TU2424747 lncRNA upstream 113966 24364567 ~ 24366627 (-) True G2120615
TU2424936 lncRNA upstream 414273 24664874 ~ 24669566 (-) True LOC110508783
TU2425098 lncRNA upstream 612490 24863091 ~ 24865205 (-) True G2120928
TU2425099 lncRNA upstream 613026 24863627 ~ 24863996 (-) True G2120929
XM_036967121.1 mRNA downstream 70964 24145942 ~ 24159318 (-) True LOC110508188
XM_036965929.1 mRNA downstream 138079 24054267 ~ 24092203 (-) True LOC110508773
XM_021589578.2 mRNA downstream 138193 24054267 ~ 24092089 (-) False LOC110508773
XM_021589579.2 mRNA downstream 138194 24054267 ~ 24092088 (-) False LOC110508773
XM_036967146.1 mRNA downstream 184800 23789600 ~ 24045482 (-) False LOC110508187
XM_021589593.2 mRNA upstream 85566 24336167 ~ 24343111 (-) True LOC110508778
XR_005040229.1 mRNA upstream 236794 24487395 ~ 24490326 (-) True LOC118944850
XR_005040276.1 mRNA upstream 295062 24545663 ~ 24547396 (-) True LOC118944874
XM_021589595.2 mRNA upstream 373352 24623953 ~ 24627150 (-) True LOC110508780
XM_036966752.1 mRNA upstream 378321 24628922 ~ 24657864 (-) False LOC110508781
TU2423555 other downstream 900667 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 1622476 22594533 ~ 22607806 (-) True G2118200
TU2421096 other downstream 2282024 21942981 ~ 21948258 (-) False LOC110508740
TU2424934 other upstream 414273 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 480073 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 893461 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 947647 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 1616700 25867301 ~ 26069209 (-) True LOC110508791

Expression Profile