RNA id: XR_005040229.1


Basic Information

Item Value
RNA id XR_005040229.1
length 2831
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC118944850
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 24487395 ~ 24490326 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtgctctaaatAGGGTATCTGTTTGTCTTTCCTTGTGTTGAAGGGTGGAGGATATCTCCTGAGAGCACGGGACTTCCTGGTGTTtgtgtagggatgtagggattGGGTTGGATGCAACAGCGATTGCACTGCCATGGTTGGCTGGAAGTGGAGAGGCTTTAAGGATCAGGAGTTTGGGTGTTTCACTGTAGTCCAAAAAAGcaccacatactgtatgtgtctgatAGAGTGCTACTTTGCTCAACTCATCTGCCATAGACATTCATTGGTGGACACAAAAGTAAGAAgaggtatacattttttttatgtttgtcaAAGTGTGTGTATTATGGAGTTTTAATGTAGGTTTAGACAAAACATCTCCTGTGCAAGCTCTAATTCTATGCACTTTTCTAGGACACTAGACGGGGGCTCGTCTCAGCCTGAAGTCAGAGAGCCAGGAAACAATCAACACAATTCAATAATCACCAGCTAGGACTGTCCGTTCATATGGAGTCAAGGCATTTCTCTGGGTTTATTTACCTTGGATCCAATTCCATTTGCTTTTTAATTTCATGGCCAAGTGGACCTCCCTGACTTCCTGGCCTTCCACCCGGGGTCGAatcccccctccctttctctgcctTCCCTCCCCCTGAAAACACAAACTGCGGGCACAAAGGTCACGCCACTCTCCTACAAGCCACACATACACACGATGAAGAGGTCCCTGGCTGCATACTCACACGGACGCACGCACgtatgcatgcacgcacacacacacacacacacacgcaagcactgTGCGCACACACTTACAGATACAGCTGTCCCAGATACAGCTGTCCCTGGATCACTTTGCTTGTTTCCCCTGACATCCTCCATGTAAGAAACACACACGGCTGTGGCTATCAGTCGAGTCTCTGCACAGCATAAAGATGTCATCGAACAGCGACTGTAAATCTCACTTAAAGCATTGTGAGTCTTCCTAGGGAGGAGGATGTGCTGTGTCACGAGGCAGAATACAGAGTTTCCAGCACTGTGACAGTTTAAATGCACAGGTTGAGAAGTAGCAGTGGATGATGGTTCTGGAGGCATTATAAGATAACCATGATGGATGATGGTTGAGAGGATGAGGTCAGGAAGTTCCTTGGGATCAAGTCTACATTCTGTAACACAGCAGATTGTGAGAGGAAGCCACAACTCCAGCTACTGGGAGACCATGCTGACTCCATGCTGACTCTGAGATCTCCACGATCCCCTACTGACTGAATGGGTAAACTCTCCCGGTGAACCTGGCTCCAGTTGTTTGTGTATGTAATATGCACTGCAGGTATGTGAGGGATGTTTTGGTTTCTCCGCTGCTCTTTGCTAAAGCCATTATTTTGGGGGGAGAGTTGTCATGGTGATCCTTAGCTTGATGCTGCTGCTAATTCCACAAAGTTTAAGTAGAGAATGAAAAGGAAATCATTCAATGAAAGGTGTTGGTGTGCTTCTATGTGTGTTAACCATACACTGCACTGCACTTGTTTTGGGGGCTTTTTTTGTTTGGCACCCTATGATTCATATGATGGTATGAGACATGGTATGAGATGTACTCAACATGAGACTCTAGAGACATAACTGAATTATATTTGATCAACCCAATTAATTATTTGTATATGCCAGGATTAATAATCAACTCTTCTGCTGATTGGCTACAACAGGGACATGACGTTTCCTGTATTGAGTATTTCCTGTTCAGCTTATTCACTGACATTTGGCCCTTGGCAGTCATAGCAattcctatcctctctctctctacattgtgCTAGGCTTTTTCATTCACTGAAATGCTTGTCCAAGGTGTCTGCCAGATGCAGACAAACCTTGcaactcaaatggcaccctattccctacacagtgcactacctttgatgggctctggtcacaagtagtgcactacatacggtagggaatagggtgccatttgggatgcacaacaGTCATACATAGTTATAGTAATGATAACAATTATGAAGTCTATGCACTTACTGTGCCCCCTGGCTCCTCCTGGAGACACTGATCTTTAACATAGAAgctttgtagtgtgtgtgtgttctgtgtgtgtgtgtgtgtacgcaacCTGTAACGTCTAAGCTCTGTAGTAGCTGTTGATACTGTAGATGCTGAGGGAGTGATTTATCTGCTGCACTGCTGGTGCTCCTCCTGGGAGCAGTCCGTCTGCTGTGAGGAGGCTGACTTTGACGGCTCTATACACTTTGACTGAATGATATCAGAgattgcatctcaaatggcaccttattcactatatagtgcactatgtagggaatagggtgccattttggatgcagacaGAGTCCCGATTAGGCTCCTGGGTAGTTTAACCACAGAACAGACCAACTGGCACTGTCGATGATTGAGCCAAGGACGTTAGTCTTGGCAAGAGCTGTGAACATTTAATGTTTCTATTCCCCCTGTGTGTTTACGACAAATGGATTTGGCTCTGTCTttcattaaataaatataaaatctgAATATAAAAGTTCAAGACCCTGCTGGAGTCGAAGACCCAGGTATGAGTTTTTCTCTTCTTTCAGACTTAGTATTTAAGAGGCAATCTGGGATTCAGACAACAACAAAGCTACAAAGTCACTGTTttagtaaacagctgagggatgggcctggagaaatgtaactattCTCAATTTCATAGaccgagctatggatgcaaggactgactgcATTTATGTTATAGTCTATGGAtgtagattgcccctttaacaaaTGCTGCATGTTGGTGTCACCAGAGACCTATGACTGTTCCTAATAAAATGGTGATGTAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2424747 lncRNA downstream 120768 24364567 ~ 24366627 (-) True G2120615
TU2424745 lncRNA downstream 125492 24361704 ~ 24361903 (-) True G2120613
TU2424084 lncRNA downstream 306897 24180219 ~ 24180498 (-) True G2120036
TU2423855 lncRNA downstream 629388 23857044 ~ 23858007 (-) True G2119831
TU2423809 lncRNA downstream 704412 23782552 ~ 23782983 (-) True G2119796
TU2424936 lncRNA upstream 174548 24664874 ~ 24669566 (-) True LOC110508783
TU2425098 lncRNA upstream 372765 24863091 ~ 24865205 (-) True G2120928
TU2425099 lncRNA upstream 373301 24863627 ~ 24863996 (-) True G2120929
TU2425152 lncRNA upstream 450555 24940881 ~ 24941255 (-) True G2120982
TU2425163 lncRNA upstream 460204 24950530 ~ 24950948 (-) True G2120993
XM_021589593.2 mRNA downstream 144284 24336167 ~ 24343111 (-) True LOC110508778
XM_021589582.2 mRNA downstream 236794 24230282 ~ 24250601 (-) True LOC110508776
XM_036967121.1 mRNA downstream 328077 24145942 ~ 24159318 (-) True LOC110508188
XM_036965929.1 mRNA downstream 395192 24054267 ~ 24092203 (-) True LOC110508773
XM_021589578.2 mRNA downstream 395306 24054267 ~ 24092089 (-) False LOC110508773
XR_005040276.1 mRNA upstream 55337 24545663 ~ 24547396 (-) True LOC118944874
XM_021589595.2 mRNA upstream 133627 24623953 ~ 24627150 (-) True LOC110508780
XM_036966752.1 mRNA upstream 138596 24628922 ~ 24657864 (-) False LOC110508781
XM_036966753.1 mRNA upstream 138596 24628922 ~ 24657864 (-) False LOC110508781
XM_021589597.2 mRNA upstream 138596 24628922 ~ 24657867 (-) False LOC110508781
TU2423555 other downstream 1157780 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 1879589 22594533 ~ 22607806 (-) True G2118200
TU2421096 other downstream 2539137 21942981 ~ 21948258 (-) False LOC110508740
TU2424934 other upstream 174548 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 240348 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 653736 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 707922 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 1376975 25867301 ~ 26069209 (-) True LOC110508791

Expression Profile