RNA id: TCONS_00055417


Basic Information

Item Value
RNA id TCONS_00055417
length 2898
RNA type mRNA
GC content 0.47
exon number 16
gene id XLOC_028568
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11124613 ~ 11132617 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGAAGAAACTTATGCATGTGTTCTGAGTTGATGAAATAGTTTGTGTTGTGCTGGAGGATATGATGGGGAAACTGATGCTGATGCTTTTGATGTTTACTGTAAAACTCATCACATCTGACAGTGTAAATGTGAGGTTGGTGAACGGCAATAACCCCTGTGCTGGTCGAGTGGAGGTTCTTGGAAGTCAGTGGGGAACAGTGTGTCAACGGGGTTGGGATGTTGCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAATGGCTGTAACACCAACATATAATGCTCACTTTGGACAAGGAACAGGATCAATTTCAATGGCTTATGTACGCTGCCGTGGATCAGAGACTTCACTGAAAGACTGTAAATCAAACAGGTATACAGGTTTCTGTAATCATGCTGAAGATGCTGGTGTGATCTGTTCAGGACAAGGACTTCGGCTTGTGAATGAGTTTCATCTGTGCTCTGGGAGATTAGAAGTGATGTTTGGCAACACCTGGGGTTCAGTGTGTGACGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGCAGACAGTTGGGCTGTGGGTCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTGGCAAAGGGAAAGATCATGTTTGGTCAGAGGAGATTCAGTGTAGTGGAAATGAGTCTCAGATTCACACCTGTCCAAAGTCCTCAACACAGAAGCGAGGCTGTTCCCATGACAATGATGTTGGAGTGATCTGTTCTGGTTACACAGATCTCCGACTGGTCAATGGTTCAGACTCTTGTTCTGGAAGAGTGGAGCTTCAGTATTTCAGTGAATGGGGCACAGTGTgtgatgcatgctgggatatgagAGCTGCCAGTGTCCTCTGTAAACAGCTGAATTGTGGGATTGCTGTGTCTGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAAATCTCAGAATGTTCAATCTCTTCATGGAGTCGAGCTGAACGCTCTCATAGACGAGATGTTGGAGTCATCTGCTCTAGCCGTGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACAGCGGCTCATGGGGGACAGTGTGTGACGACTCCTGGGATATTAAAGATGCCCATGTGGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACCCATATGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGGAAAACATGACTGTAAACACAAGGAGGATGTAGGAGTCATCTGCTCTGaGTATAAAGAGATCAGGTTAACTGAAGGTTGTGAAGGGAATCTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGTTACAACAAGATGGACAGAGACACAGCAAGTCTGATCTGTCAAGAGCTGAACTGTGGAAGATCTGGCAGTGAACCCAGTAATTCAAAAGGACTAAAGTCTCATAATTGGCTCGATAAACTTAAATGTCGAAGATATGATTCCACGTTATGGCAGTGTCCATCTGCAGCCTGGGGACAGAATGACTGTGATAATGAAGTGGCTAAGATCACCTGCTCAGctcatgtTCCTCTCAGACTGCGTGGAGGGGACGGCCGGTGCTCTGGGAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACATCAGCGATGCTCAGGTGGTCTGCGGACAGCTGGGGTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGCCTTTGGTGCTGGTGAAGGTGTTGTGTGGCTGAACAGAGTCCAGTGCAAAGGGAATGAGCTTCACCTGTGGGACTGTCCTCTCTCCCTGAAGAAGCACACTAACTGCTCCCACAAAGAGCACGCTGGACTCACCTGTGCAGACTTGCCGGATATATCAGTGTCCACTACTCCTGCCACATCAGCATCATCTTCTGCTGCAGTTTCTCAGACAGTGAGCTCAACATCAGTCTCTCCTCCACAAACTGGTCGAGAAAGTCTCCCAGTCCCCCCAGTGCTGCTGATTGTTCTGGGAGTTGTGCTCTTACTGCTCTTAGTGCCGCTGCTTATAGTGATTAAGCAGAACAGAGTGATGAGGAGAGCTCTCTCTAAGAGGAGACACAGGACCACCACTGAGGCCGTTTATGAGGAGATtcagcacaaacacaaacactttacTCACAGGGAGAGTCTCATCTCTGAAGAACTGCATTCTGGGTATGAAGACGCTGATGATCTTCTCTCAGAAAAAGAGTTCAGaacagcatattatgatgatgtCACCAGCAACAGTGGCCTAAAAGAAGAGAAGATGAAGGAAAATACACTGGGATACTATGATGATGTCATCACTGATGGACTGAAGCCAGATTATGAGACAGAAAACACACCTGAGAGCTATGATGATGTCATGACCAGTGAACAGAGCTCTATTACGAAAGTGAACACAGCAGAGAGTTATGATGATGTCATCATTAATGGACAGAGGGAAACAGAGGGAGATCAGGAGGAATATGATGATGTGAGTGAAGATGTGACAAACCTGCTGGATTATGATGATGTGGACGAGGAGTTAAATGAAGAGGGAGAGACATTTGGGTCAACAATCAAACCCAGTTATTTGCTTCAACAGATTTGATCACTGAGAACTCAAGAGTGATATTGTAACTGATATCTCTGATATatcttttataataattttatgattattttatgataaaaaagttattaaagttatatatttgatgtgatttttttattcagctttgttCATTGCAATAAAAATCTTGTTTAGG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-110915-1 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000150250

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058100 lncRNA downstream 312327 10793666 ~ 10812287 (-) False XLOC_028555
TCONS_00055395 lncRNA downstream 312378 10790960 ~ 10812236 (-) False XLOC_028555
TCONS_00055396 lncRNA downstream 312440 10791967 ~ 10812174 (-) False XLOC_028555
TCONS_00055397 lncRNA downstream 327652 10793666 ~ 10796962 (-) False XLOC_028555
TCONS_00058099 lncRNA downstream 331561 10788536 ~ 10793053 (-) False XLOC_028555
TCONS_00055421 lncRNA upstream 46892 11179509 ~ 11186936 (-) True XLOC_028570
TCONS_00055422 lncRNA upstream 112715 11245332 ~ 11248285 (-) True XLOC_028571
TCONS_00055426 lncRNA upstream 270074 11402691 ~ 11404177 (-) True XLOC_028572
TCONS_00055430 lncRNA upstream 444228 11576845 ~ 11580944 (-) False XLOC_028573
TCONS_00055434 lncRNA upstream 478101 11610718 ~ 11637236 (-) False XLOC_028576
TCONS_00055414 mRNA downstream 1976 11112580 ~ 11122638 (-) True XLOC_028567
TCONS_00055413 mRNA downstream 17758 11099041 ~ 11106856 (-) True XLOC_028566
TCONS_00055412 mRNA downstream 26075 11084209 ~ 11098539 (-) True XLOC_028565
TCONS_00055411 mRNA downstream 42653 11079058 ~ 11081961 (-) True XLOC_028564
TCONS_00055410 mRNA downstream 46742 11070864 ~ 11077872 (-) True XLOC_028563
TCONS_00055418 mRNA upstream 11983 11144600 ~ 11165961 (-) False XLOC_028569
TCONS_00055419 mRNA upstream 14001 11146618 ~ 11165611 (-) False XLOC_028569
TCONS_00055420 mRNA upstream 16025 11148642 ~ 11163112 (-) True XLOC_028569
TCONS_00055423 mRNA upstream 268401 11401018 ~ 11403859 (-) False XLOC_028572
TCONS_00055424 mRNA upstream 268504 11401121 ~ 11404967 (-) False XLOC_028572
TCONS_00055389 other downstream 462937 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 2536706 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 2983148 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055313 other downstream 3248684 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 3248854 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055432 other upstream 474141 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 475579 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 1142497 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 1280802 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 1463063 12595680 ~ 12595804 (-) True XLOC_028597

Expression Profile

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