RNA id: XM_036966751.1


Basic Information

Item Value
RNA id XM_036966751.1
length 2493
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110508781
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 24628922 ~ 24657867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcgATCTGGGAATATGTGTCTCTGATGTGATCCCGACAGGAGGTTCTGAGCTAAATTGTAACCACCCACTTGAACCGGAACCTTTTCAAGCTACAACTGTGTTGCCTTCACGATCATGTGTATCGCAGAGCTTCATTTACATTCCCTTTACACAACTGATAAAAACGACGATGTCTCCTCCTCATCAAGCATGGATGATTTAAAAATGAACGTTAGTCATGTTCAAAAGCGTGCTTAATGCGTGGTCTTGGCCGACTGTGGAAGCTTAATTGATTTACTTAGAAGAAGGTAATTGCAACATTGTAACGCATTGGAAAGATGGGGAGCACGACCTCTTGCTGTGTGTCTTCAAGTCCGAAGCTCCGAAGAAATGCTCATTCGAGGCTGGAGTCGTACAACACCGAGCCGGAGTTGAGTAGGGAGGATACGGGCTGCAACCTGCAGCACATCAGCGACCGAGAGAATGTCGACGAGCTGAACATGGAGTACAACCCCTCTGACCATCCTCGGGCCAGCACAATATTCCTCAGCAAATCTCAGACGGATGTGCGTGAAAAAAGAAAGAGCCTCTTCATCAATCATTTAACACACATTGACGAGTCAAAGCATGGATCAACTAGAAGAAAACACAGCTCCTGTTCCACCATCTTCCTGGATGACAACACAGTCAGTCAGCCCAATCTTAAATTCACCATTAAATGTGTATCTCTTGCAATATATTACCATATCAAGAATAGGGACACAGATGGAGGAATGCGGCAAGACATTTTTGACGAGAAGCTTCACCCTCTCTCGAAATCTGAAGTGCCGTCTGACTATGACAAACACGACCCCGAGCAGAAGCAGATCTACCGCTTCGTCCGGACGCTGTTCAGCGCTGCTCAGCTCACTGCAGAATGTGCCATTGTTACACTGGTGTACGTTGAAAGGCTGCTGACGTATGCAGAGATAGACATTGGCCCAGAGAACTGGAAGCGTATGGTACTGGGAGCCATTCTGCTGGCCTCTAAGGTCTGGGATGACCAGGCTGTTTGGAACGTAGACTACTGCCAGATCCTCAAAGACATCACCGTGGAGGACAtGAACGAGCTGGAGCGTCAGTTTCTGGAGCTTTTGCAGTTCAACATCAACGTTCCATCAAGTGTTTATGCCAAGTATTACTTTGACCTGCGCTCACTGTCAGAGACCAACAACCTGAGCTTCCCTCTGGAGCTCCTGAGCCGGGACAAAGCCCAGAGACTAGAGGCGATCTCAAGGTTATGTGACGACAAGTACAAGGATGCCAGGAGAGCTGCCAAGAAGCGCTCAGCGAGCGTGGACAATCTGGTCGGGGTGCGATGGGTCCCTGCCATCCTTTCCTAACAACCAGGAACGTAGACCACACCTGAGACTGGGCCTGAGACTGGGCCTGAGACTGGGCCTGAGACTGGGCCTGAGACTGGGCCTGAGACTAGGCCTGAGGCTGGGATAGAGACCAGCATGGTAAaattcccaaaattcccaggttttccagaataCCTGATTGGAGGATTCCCGATTTCCTGCTGTTTCCGGGAATCATCCAATCTGGATTCCTGGGGAATTTTGGAAAAGTTACCCGAATTCTGCAACCCGAACCTGGATAGACAGACCGACCTTGTCACAGATAGATGCCTTCACAGTGCCTCCGCTCCTGTAACACAGGGAAGAGTTCTCAATAGGACTGGTAGTTCACTGACTGTTAAGAGTAAGACAAATGAAAGCTTCTTTGTGATACAACATAAAGATGACTGTTAAGAGATCTCATGACATCACAGTTTTCTGTGGACAGAAGCAGCCAGGTGACCATCAAGACCATCAGAAGTAGCCAGCCAACCATCACTGTGGAAACATTAGCTTTATGCGTTGTAGCAGCAAACCAACAGAGAAGTTGTCAGAAAACAACATTTCAGTGTCATTTGACCTCTTTTCCTGGGTCGTACCAAACGAAAGAAAAAGGACTGAAACGGTTGGATGAACTGAACTTGTCCATTAAGAAACGGTTTCCGTTGAAAAGGTTTTGCTATGGCGTGCACTAATGAATAGGATCGTGGGTCCTAGACTGTCCAAGCTGGCGTGGCACGACGGACAGTTGGTTGCCTTTGGAGATGGTTCTGTAACTTTTGGTGAAAGGGTTTATATTCATTTTGTGTTCATAAGGTTGTTTTCACTGCCTACTGCTATAGCCGACCAAACCCAAGTACCTGCAGACATCATTTGATCAGGGAAAACAGCATTCTAGCTGTGCAGGCGTTTCTACTGGGGATCTACATTCAAATTCCAGAAACATTTAGTTCTTAATGAACACAATTATTTTGTTCATGTTCAAACAAATTGACCATATTACTttactacccactgggcaaaaactggttgaatcaacatggtttccacatcatttcaacgaaacaattcaatgtgatgacgttgaattaacatggtttccacatcatttcaacaaaacaattcaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2424747 lncRNA downstream 262295 24364567 ~ 24366627 (-) True G2120615
TU2424745 lncRNA downstream 267019 24361704 ~ 24361903 (-) True G2120613
TU2424084 lncRNA downstream 448424 24180219 ~ 24180498 (-) True G2120036
TU2423855 lncRNA downstream 770915 23857044 ~ 23858007 (-) True G2119831
TU2423809 lncRNA downstream 845939 23782552 ~ 23782983 (-) True G2119796
TU2424936 lncRNA upstream 7007 24664874 ~ 24669566 (-) True LOC110508783
TU2425098 lncRNA upstream 205224 24863091 ~ 24865205 (-) True G2120928
TU2425099 lncRNA upstream 205760 24863627 ~ 24863996 (-) True G2120929
TU2425152 lncRNA upstream 283014 24940881 ~ 24941255 (-) True G2120982
TU2425163 lncRNA upstream 292663 24950530 ~ 24950948 (-) True G2120993
XM_021589595.2 mRNA downstream 1772 24623953 ~ 24627150 (-) True LOC110508780
XR_005040276.1 mRNA downstream 81526 24545663 ~ 24547396 (-) True LOC118944874
XR_005040229.1 mRNA downstream 138596 24487395 ~ 24490326 (-) True LOC118944850
XM_021589593.2 mRNA downstream 285811 24336167 ~ 24343111 (-) True LOC110508778
XM_021589582.2 mRNA downstream 378321 24230282 ~ 24250601 (-) True LOC110508776
XM_021589599.2 mRNA upstream 7002 24664869 ~ 24669629 (-) False LOC110508783
XM_021589598.2 mRNA upstream 7002 24664869 ~ 24677151 (-) False LOC110508783
XM_036966397.1 mRNA upstream 7002 24664869 ~ 24677152 (-) False LOC110508783
XM_021589613.2 mRNA upstream 557475 25215342 ~ 25232530 (-) False LOC110508788
XM_036966572.1 mRNA upstream 557475 25215342 ~ 25232530 (-) True LOC110508788
TU2423555 other downstream 1299307 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 2021116 22594533 ~ 22607806 (-) True G2118200
TU2421096 other downstream 2680664 21942981 ~ 21948258 (-) False LOC110508740
TU2424934 other upstream 7007 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 72807 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 486195 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 540381 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 1209434 25867301 ~ 26069209 (-) True LOC110508791

Expression Profile