RNA id: XM_021589598.2


Basic Information

Item Value
RNA id XM_021589598.2
length 2898
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110508783
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 24664869 ~ 24677152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTGTTTTTCTGTAGGGTTCAGTTGGAGGGGACGAGTGCTTGGTCGACATTTTAGCGCTGCATCATCAGGACTGACGTGGGGACTACGTGGCTCGAGCCATCCACTCCTACCATAATTAGTGACGAGTCTGACTACGTAATTTATAACTTTGTCCGATGACCATGGACACAGAGGTTGTGTCGTCAAAGCAGGAGGGACGTTTTGATGACTCTCTGTCTGATGAGGATCCAAGTCAGAGTGAATCCAACTCACCCACTGCAGTAATCACTCAGGTTTCAGGAGACTCCGCTGGCATGACAGTGGTGCAGTTACCTAGTGGGCAGACACTTCATGTTCAGGGTGTCATCCAGGCTCCTCAGGCCTCTGTCATCCAGTCACCACAGATGCAGAATGTACAGATAACCTCCATAGCTGGGCTTGAAGATGGGGAGTCaacagccacagacacacagaaaagaAGAGAGATTCTCTCAAGACGCCCATCTTATCGAAAAATCCTCAATGAACTATCATCAGATTCCTCCTCAATTCCGAGAATCGAGGAAGAGAAACCCGAAGATGAGGTTCCATCCTCCAGTGTGCCTGCAGTTCAAGTGCCAACTTCAATCTATCAGACCAGCAGCGGCCAATACATTGCCATCACCCAGGGGGGAGCCATCCAGATAACCAGCCCAGGCAGTGAGGGTCTGCAGGGCGTACAGACTCTGGCCATGTCCAACTCTGGTACACCCCAGATCCTGCAGTATGCAACCCAGGCAGGGGACTCAGGACAGCAGTTCTTCTCTGTACAAGGTGGCCAGGTGGTGATACAAGCTGCCACTGGAGATATGCCGGCATACCAGCTCCGTTCGCCCACCTCGTCGGGCCTGCCCCAGGGTCTGGTGATGGCTGCGTCCCCAGGCTCCCTGTCCATGCACAATCCCCCGGTGCACACTGAGGAGGTAACACGCAAAAGGGAGGTCCGCCTCATGAAGAACAGGGAGGCTGCAAGGGAGTGCCGCAAGAAAAAGAAAGAGTATGTCAAGTGTCTGGAGAACCGTGTGGCCGTGCTGGAAAACCAAAACAAGACCCTCATTGAGGAACTCAAAGCGCTAAAGGATATTTACTGCCACAAGAATGAGTAGCTGAGTAGCTGCTCTCAGCCTtgtgccaggagagagagagagatcctactGAGAATGCACAGAGTGGAGTTTACAGATTGACTGCTGTAAAAAAAAGACTCTGGGACGAAAACTACTTTCACTGTCTTTGTTTCTCGTTTACTCCGCTTGTTTGGGCCCAGTCAATTTGATGCTGCACCGGAGGTTGTTAGGTGGCCGTAGGCTTGTGCTCTCCGGGCTGAAGTCAAGTCCTGCTCCGGACAGGACCCCTGTCTGTCCTTGCGCTTGTATGTGAATACACAAGTGACGCCCAGCCGCGTTTGCTTCTGCTGTTTGCAGGGAGGTAGCCAATGAGATGCTAGCctgcagaggaagaggaagtagATATGCTTCCTGAAGGCACACCGCTCACCACCACTGGCTCACCGCATTTGAAAAGCAGAAGCTGCGAAAGAGCCTCACTATCAGCCAGCAAGTTCACATTAAGTGCACGCAGACTCACCAGCAAGTCAACCTACCACAGCCGGACTGTTTGTGCtgtcatgccaactccttgtTACTTTTTTATCACATTTGGCTTGACAATGAAAGCATTTGAGTTGGCAAGAGTACaaccagatctgggaccaggctaaaccTATATATCTTTACTTGTCACTGCTAGCTACAGTTGTTCTCCTTATATTACTGTACTTCTCTGCTCACCTTGGCTGTTGTCAACATACCTTTGTTAAATCAGGTGGACCTCTTCTTTCAGGACAGTGTGATGAGTAAATACACTTTCCGAAATTATTTTAGTTTTGAAATTCTATATTTGTCCTTTTGACTGTCAATCGGGGTTGTCTAATGACTTCACGTGTTACCTGAATCAATGTGTAAAACCCAGTGTCGAGGATGTGAGTATACGCCTTTCACTTGGTCTCTTCAAACAACACAGTTCAATTTAAAATGTCAAATTAACATGGCGTGGCCCTCGGATTAGTGTATctaaaataattatatatttcTAGCCATTGGAGGAATCTTATCTCACCAAGACCATCTTGAAATGACTACTGCTTTACCACACAAAATTGCTACATTTGATGTTCACTGAATCTCTCACCAGTCATTGTcccctttgtctgtctgtctcggaaCAGTACTGTGCTGTGCCAGTGTACTGTACAAAAGAAGCACTGAAAGTGCTGATAAGCTGACGTTTGGGTATTTTGATACTCATTATAAGCGTTTTATGTGAATTAGTTGATCATAACATATAAGATATGGCCCAAATGGCCCACTATtttctttatagtgcactacttttgacctgagttctatgggcccaggtcaaaattagtgcactaaataggtaaTAGTGTGCCAGTTGGCATGTAAAAATAGAGTTCATGACTGCTCTGTTTGAAAGGTATGTCCATGAGAGCACAGACCTGActatgaagatgatgatgataatgatgtagCTTTGTTATTCTTTCCTCATACCAGTTCTGCTTGCAGTGATTTTGCAGCCTCCCGCTTGCTTTGAATTTCCTGATAACCTTTCTGTTTACATGTATATGTCCTTTGTATGTTTGTTGTCAGGCCAGTAGTTATACAATTCAGGTGAGATGTAAAATAAATTTGATCTCAGTAAATGTTTTGGATAGAATTGAAAAGTATGTCAAACAGGTTAGCTCTTAAAACCAGATGTTCACCTCATGTGTATTGATCCCTCTTATGTTTGAATATTGTCAAAATATACTATTTCTAATAAAATGTCCATACCACAGTATGAATTACACTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2424747 lncRNA downstream 298242 24364567 ~ 24366627 (-) True G2120615
TU2424745 lncRNA downstream 302966 24361704 ~ 24361903 (-) True G2120613
TU2424084 lncRNA downstream 484371 24180219 ~ 24180498 (-) True G2120036
TU2423855 lncRNA downstream 806862 23857044 ~ 23858007 (-) True G2119831
TU2423809 lncRNA downstream 881886 23782552 ~ 23782983 (-) True G2119796
TU2425098 lncRNA upstream 185940 24863091 ~ 24865205 (-) True G2120928
TU2425099 lncRNA upstream 186476 24863627 ~ 24863996 (-) True G2120929
TU2425152 lncRNA upstream 263730 24940881 ~ 24941255 (-) True G2120982
TU2425163 lncRNA upstream 273379 24950530 ~ 24950948 (-) True G2120993
TU2425544 lncRNA upstream 327265 25004416 ~ 25014010 (-) False G2121361
XM_021589597.2 mRNA downstream 7002 24628922 ~ 24657867 (-) False LOC110508781
XM_036966751.1 mRNA downstream 7002 24628922 ~ 24657867 (-) True LOC110508781
XM_036966752.1 mRNA downstream 7005 24628922 ~ 24657864 (-) False LOC110508781
XM_036966753.1 mRNA downstream 7005 24628922 ~ 24657864 (-) False LOC110508781
XM_021589595.2 mRNA downstream 37719 24623953 ~ 24627150 (-) True LOC110508780
XM_021589613.2 mRNA upstream 538191 25215342 ~ 25232530 (-) False LOC110508788
XM_036966572.1 mRNA upstream 538191 25215342 ~ 25232530 (-) True LOC110508788
XM_036966783.1 mRNA upstream 667299 25344450 ~ 25365071 (-) False LOC110508789
XM_036966784.1 mRNA upstream 667299 25344450 ~ 25412332 (-) True LOC110508789
XM_036966015.1 mRNA upstream 1005167 25682318 ~ 26069267 (-) False LOC110508791
TU2423555 other downstream 1335254 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 2057063 22594533 ~ 22607806 (-) True G2118200
TU2421096 other downstream 2716611 21942981 ~ 21948258 (-) False LOC110508740
TU2424996 other upstream 53523 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 466911 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 521097 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 1190150 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other upstream 1269582 25946733 ~ 25950453 (-) True G2122515

Expression Profile