RNA id: TCONS_00055418



Basic Information


Item Value
RNA id TCONS_00055418
length 6147
RNA type mRNA
GC content 0.40
exon number 10
gene id XLOC_028569
representative False

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11144600 ~ 11165961 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CCATTTtcgaaattaaaaaaaaatgtttttattttatatacagataTCTGTGAAGCTGTTTCTTCaatattatttcaaacaatacCAGCTCTAACAGGATATAAATGACGTTAGCAGCACCAAGGTTAAGGGTTCGATTCCCAGAAGCTATACAAGAACTTATAATGTGCATCGCttcggataaaagcgtctgcACACGTCTGTCTGAATAAGTTCAGCCTTGAAATGGATTAAAATGCAATCGGCCTTGTGTCCTTTATTTTGAGAAAGTGGAGGTGCGATAGTTGTGTGGGAGGCACTAATTCAGCTACTGATACCGCTCCAGTTCTGCACTCGCTGCGCTCCAGTTCAGTCAGCAGTCTCTCCAACTTTACGCTTCGTTCCAGACGCATCTGACCGTCCACAACCAAACGACAAGGATTTCAAAAATCAGATAACAGAGGATCACCATGGCAAGCTTAAATGAAACATGCATCTGATCTGTCCAAGCACAGGTAACGCGGAGATGCGCAGCGCCAGGTGATGTGGATGCTGAAGCGGCGCGGATCAACTGGTCTCCAAGTGGCGCTCAGAACCTCCGGTAGAACTTTTTACACGATGGGTTTTCATTATAGGAGTAGGAATAGTGAAGTTCGAGGACTATCTGCTAAGTCTTTATGACAATTTCCCTATTAGTCTCTTTTTAGGCATTTACTGTTTATTAAACGCTTTGCAAATTAACAAATGGCTCGTTTCAAAGCGCACACCGAGTATTGCCTATTGCAGCGCGTTTTGAAACTTTTCTAGGAGATTTAGCGAGAACACTTGCCCTCATCGAGTTAATCCGGATCCCGTTGGCTCGTATGGGACTGAGGCACTCATCGCGGTGTCTGCTCCTGCGGAGAAAGATGGCGGAGGCGGAGAGCACGGAGcagcagcagcagcaaaaaCACAAGCAACCTCAGCATCAGCAGCAGCAAAGTATTTCCAGCATCCCCTCGTCCCAGTCCCTACAACCATCTCCACTACCAAAACCAGTGACCTCAGTTCATCATGTCCCTCCTCACCCTCCACACACGCCACACGTCTCTGCCCTTTCTGCCTGCCCCGGCCGAGGAAAGATGGCCAAACTGCTCAACCCAGAGGAGATGACATCTCGAGATTACTATTTCGACTCTTATGCCCACTTTGGAATTCATGAGGAAATGCTAAAGGATGAGGTGAGGACGCTGACTTACAGGAACTCCATGTATCACAATAAACACATCTTCAAGGATAAGATCGTTCTGGATGTGGGCAGCGGAACTGGAATCCTCTCCATGTTTGCTGCCAAGGCAGGAGCCAAGCATGTGTACGGGATCGAATGCTCCAGCATATCAGAGTATTCGGAGAAAATCATCAAGTCGAATCATCTGGACAGCGTTATTACGATCCTTAAAGGCAAGGTGGAGGAGACGGAACTGCCTGTGGATCAGGTGGACATCATCATTTCCGAGTGGATGGGTTACTGTCTGTTCTACGAGTCCATGCTCAACACTGTCATCTATGCCAGAGACAAATGGCTGaaacCTGGTGGTTTCATGTTTCCAGACAGAGCGACATTATATGTGGTTGCCATTGAAGATCGACAGTACAAAGACTTCAAAATTCACTGGTGGGAAAACGTCTATGGATTTGACATGACGTGCATCCGAAATGTTGCCATGATGGAGCCCCTGGTGGACATAGTAGATCCTAAACAAGTCGTTACCAATTCCTGCCTTGTTAAGGAGGTGGACATTTACACAGTGAAGACGGAGGATTTGTCGTTCACCTCAGCTTTCTGTCTGCAGATTCAGAGAAACGATTACGTTCATGCTCTCGTTACGTATTTTAACATTGAGTTCACCAAGTGTCACAAGAAGACTGGCTTTTCCACTGCCCCAGACGCACCCAGCACTCACTGGAAGCAGACAGTGTTTTATCTGGAGGATTATTTAACTGTGCGCAGGGGAGAGGAAATACTGGGCAGCATCACTGTGAGGCCCAATGAGAATAATGAGCGTGACTTAGACTTCACCTTTGAGTTGGATTTCAAAGGACAGCTCTGCGACGCCGCCATCTCTCACGACTACAAAATGCGGTAAAACCCTCACAGCATCCTAAAGCCGGGACCGCGTTTCCCAGAGCGATTCGGCAGAGGTCCCCCCTCCGCCTGTGTCTGGATAAAAGAGGCTGCTGAACGGCAGGAAACCTCAGTGATGTCATCAGTGCCAGTCCAGCACTAAAAGCAATAGTGTCATCACATGTCACGTTCTTAAATGCACATAGAggatagactgaaaaaaacatcaCTCTGAATGTAACTGCTAATGAGTCTGAGAATGTCAAAGTCTGTGTTTATTTCACCTTTAAAGATAGGGAAAGAGTTACCGAACAGTATATAACGCCAATGTGGAATCGTACTATAGTGCCTCGTTGAAAAGGCTTCAGTTTGGGTGCGTACATGAAAACAGCATGAATGATTGTTCTGCTTATATTTAAGtgcttttattgtgtttatattgaTTGGGTTTGTGTCGAGTCGTTTAATATAGTGACCGCTGGCATGTTCTATGCTTTGCTTATTATTTAAATTCACTCACTAAGATCCTCTAAGAGCAACTATACTGTTTTAAGTCATCAGGATTTGTTATTTTTAGGATGAACTAAATGTGTTTTAACTTGAGAGTATTTTTGGTTTCGTGTTCTGTCAGGTCACTGTCACATACTACCTGTTGAAGAAAGTCTGATTGAGTTAAAgtgggttttatattcgcacattcgttcatttttgaacagtgacagcttttgacatatttaaatatattatattctgtCTGAAATCGCATCtaagtgtagcagaggccagcgtgtgaagtgttgtgcaggtaaacctccctCCCTACCTCTAAAAGGTGCTTTAGCGACAGACGCTTGAGGCAATGGTATTTAGCCTCCCTGTTAGAGCAACCAATTCCCATGCGGAAAGTCTATGACTCaatcccagcttggagcgggttgggtggttaAATTGGTGCCAttacccggatgggagtgaggtttaggggggtgagtgtagcaaaggccagctagtgaagtgataggtagaggccatggtctttagcctccttgttagagcaaccaattCCTGACATAAACATGCTATGTGCATCCTGAGCCGGGACAGTGAGCAATGTTTGacagtcattcattaattttcctttagcctaGTCTCTAATTTATCAGAggttccacagcggaatgaaccgccaactattccagcatatgttttatgctgaaATATCTTGATCTGATCTTTTTTAGCCTGACTTGGACTTCAAAGGACAGCTCTTTACCGCCACCATCTCAAACGACAACAAAATGCGGTAATCTCTCATCTCTGATTTATTCAGAGAGTCGCCACCGTGGAGTGAACCCCCAActgtttcagcatatgttttatgcagcggatatccttccagcctcaacccagtactgtaaaacacctacactttcacattcacacacactcatacactatggccaatttagcttacccaattcacctttagcgcatgtctttggactgttggtgaaaccgcagcacccagaggaaacccacacgaacacggggagaacatgcaaaccctacagaaatgccaattggcccagtcaagactcgaaccagcaaccttcttgctgtgaggcgattgtgcaaccCACTGAGTACACCTTGAAAGTCGCtggctgataatatgatttcCATACTTTtctgaatagtaataataattaataataaatgatattattaacgggaaagtctgaatgtgcgaatataaactGATTCATGTAAAAACAAGAGCAGTTCAGATGAAGACAGCGAACGAGGCACAAAATGTTTGACTCTTAATTTAGCCAAGGCTTTTTTCCTCCCCTTCAATAAGGTATATTTGGATGCTTTATTTTGTCGTCATCATCTAAACTGCCTTGCAAATGGTTCCTGGAAACACTTGTTGTTCACAAAGATCTGCCGGTCAGTTTGAAATCCAAGTTTCGTGATGCTAGCAAGATTTGAGAGGATTTTAATGAGGCTATAATGTgataaataaatggaaagcaacaaacaaaatacattttcttcTGAATTACTTTGCTTTTGCTTACCTGGTTGAATTGGATATTTTGCACTTATCACACTCTTTTCTCCATCAAAAGAATGGCTATTGTAATTAACACTTGTTTGCATTATACAATAACAAATagaatatatacagtacaaaaaTCATTTTAGGTGAAAAACTGTTCAAACTACATTATAGTTCACATacagttgcacacacacacatcagatgaGCGCAGATATACAACGCTCTTTGCCAAATGGACAGGAAAAGCCTTTTTACATGTTACACTGTTCATTTTTGATTCAGGCGAGGGTAAATTCAACCTTTTTCcatctaaaataaattatttacattaagtaTAGTGTGGTTGATACATGATGATACATGAAGCATATTGATTTGGTCACTTGCAGCAGGTTTTCTTCTTTAATGGTTGATCCCCCAGTCTGACTGTGTTTACCCAAACTCTGTCTTCCTGTTCCCTCAGGACTCTGAAATATATcagtttttgttaaaataataaaaatatgagaaATGAAATAGCTCTAAATAATActgatattattttataaatgaatatataaattattaaaccatgaaAAGTAACaattgactttatttttatttatttctttattattaatattattattattaacaataataatgattcttattattatttctaatccACAGTTCTGCATCATTTATTTGATCTGATTATAATATTTAAGTAGCAGGTCATGTGATCTCAACACGGCTGCCACCTGTACCTTTCAAAGTAAATATACTACATAAGGTTTGCACAGTATGCAATAAGTATAACAGATATACAtttagtataaatatataaacatatcatgctgatcttttttattataaaaaggaAAACCAAATTGTTTCTTGGTatcatctttgttttttttttttgtttggttgttttgttgTCTGTTAGCTGCCTCACAGTTTCATTACCCCCCTTTTTTGTGTGTGAGTTCCAGCTCTGTCAGAAGTATTACAAATATTGAGGCTAAATGACATACAAAAACATTATATTGTGTGATATTAGTCCTCTTACCTGGCCAGGTGTATCATGGCCTCCAGCACATTAGCTCCAGTATAAGCACTGCACTCATAGAACATCAGGTTTGCTTCCTAAAAAACATTGATATATTATAAGTCTATGCGTGAAGACatcgtattaaataaataaccttcATAGTATTTAGTTGTACTGTAATATATTGTGTACATCCATACCTCTGCTAGCAGATCAGCCTCTTTTGTCTGCACTTCTCTCTCATTCTCTTTATCTGATTTGTTGCCGAGGAGCATGACGGGGATGGGGTCGCCCACAGCCTCCTGTATGCTGGATAACCAGGGACGAACTGAGCTGAAACTGTCCTCCATTGTGATGTCATAGATGACTACCACACCATCAGCTTTGCGGAAAAACTGCTTGGTAATGCTGCGATACCTGCAGGCCACAGAGTAAGTCATGCTGGAGGTTTTGTCATCAGTGAGATCATGATTTGGTTGTATTATAGACTACTCTGGATGATAAGCTGTGGAAATGATAATACTAAAGTGTAAAGACTGAGGAACAAAAACAAAGCATGCTAACTGATGGGGAATGTTAATGCCCTAAATAGGaagatattaattatataaatgcatttataaattacataaataaacgtTAGTATGATGTTATCAGGGCCTCACCTTTCCTGGCCTGCTGTATCCCATAATTGAAGAGCCACATGACTGTCCCCCAAATTGAGTGTTCTCACACTGTAGTCAATGCCTGTACAAAAGTAGGgtatttaaaaaacattgaaTCActttatgcattatatatatatatatatatatatatatatatatatatatatatatatatatatatatacataaataataaaaacagttgcATATTAGATATAGTTATAtgtttaatcacatttaaaaaagggaaaatataaaactataaaacaacaacaaaccatTACCCCATCATAGC

Function


GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0048813 dendrite morphogenesis biological_process
GO:0018216 peptidyl-arginine methylation biological_process
GO:0051260 protein homooligomerization biological_process
GO:0016571 histone methylation biological_process
GO:0048666 neuron development biological_process
GO:0032259 methylation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005886 plasma membrane cellular_component
GO:0098753 anchored component of the cytoplasmic side of the plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0035241 protein-arginine omega-N monomethyltransferase activity molecular_function
GO:0035242 protein-arginine omega-N asymmetric methyltransferase activity molecular_function
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0042802 identical protein binding molecular_function
GO:1904047 S-adenosyl-L-methionine binding molecular_function
GO:0016273 arginine N-methyltransferase activity molecular_function
GO:0016274 protein-arginine N-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7791 Enables arginine N-methyltransferase activity. Acts upstream of or within dendrite morphogenesis and midbrain-hindbrain boundary development. Predicted to be anchored component of the cytoplasmic side of the plasma membrane. Predicted to be active in plasma membrane. Is expressed in brain; eye; and somite. Orthologous to human PRMT8 (protein arginine methyltransferase 8).

Ensembl:

ensembl_id ENSDART00000193393

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00055416 lncRNA downstream 18950 11124613 ~ 11125650 (-) False XLOC_028568
TCONS_00055415 lncRNA downstream 19434 11124613 ~ 11125166 (-) False XLOC_028568
TCONS_00058100 lncRNA downstream 332313 10793666 ~ 10812287 (-) False XLOC_028555
TCONS_00055395 lncRNA downstream 332364 10790960 ~ 10812236 (-) False XLOC_028555
TCONS_00055396 lncRNA downstream 332426 10791967 ~ 10812174 (-) False XLOC_028555
TCONS_00055421 lncRNA upstream 13548 11179509 ~ 11186936 (-) True XLOC_028570
TCONS_00055422 lncRNA upstream 79371 11245332 ~ 11248285 (-) True XLOC_028571
TCONS_00055426 lncRNA upstream 236730 11402691 ~ 11404177 (-) True XLOC_028572
TCONS_00055430 lncRNA upstream 410884 11576845 ~ 11580944 (-) False XLOC_028573
TCONS_00055434 lncRNA upstream 444757 11610718 ~ 11637236 (-) False XLOC_028576
TCONS_00055417 mRNA downstream 11983 11124614 ~ 11132617 (-) True XLOC_028568
TCONS_00055414 mRNA downstream 21962 11112580 ~ 11122638 (-) True XLOC_028567
TCONS_00055413 mRNA downstream 37744 11099041 ~ 11106856 (-) True XLOC_028566
TCONS_00055412 mRNA downstream 46061 11084209 ~ 11098539 (-) True XLOC_028565
TCONS_00055411 mRNA downstream 62639 11079058 ~ 11081961 (-) True XLOC_028564
TCONS_00055423 mRNA upstream 235057 11401018 ~ 11403859 (-) False XLOC_028572
TCONS_00055424 mRNA upstream 235160 11401121 ~ 11404967 (-) False XLOC_028572
TCONS_00055425 mRNA upstream 235163 11401124 ~ 11403811 (-) False XLOC_028572
TCONS_00055427 mRNA upstream 407607 11573568 ~ 11580948 (-) False XLOC_028573
TCONS_00055428 mRNA upstream 407607 11573568 ~ 11594202 (-) False XLOC_028573
TCONS_00055389 other downstream 482923 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 2556692 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3003134 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055313 other downstream 3268670 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 3268840 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055432 other upstream 440797 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 442235 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 1109153 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 1247458 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 1429719 12595680 ~ 12595804 (-) True XLOC_028597

Expression Profile


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