RNA id: XM_036966572.1


Basic Information

Item Value
RNA id XM_036966572.1
length 2916
RNA type mRNA
GC content 0.54
exon number 16
gene id LOC110508788
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 25215342 ~ 25232530 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGACAACTTTTTCCCCATCACTTCCGGGCTGATAACAAGGGCCATAGATGCCCGCAGATTTCCACTACAATCTCTTAGTTTGATGTATACATTGGCACCATTGCTTTGATGTTTGGGCGTGACATGATGACAAAAGCCAGCAAATGATTTTTGTATTGACGAAATTATTCCAAGAGCCGCGAGAATAGCGGGCGAGAAAGAGGTAACCTGACTCTTCTACCGAGCAGCGTCTGCTAGTCCAAGCAGATCCACCAAAGGGACCACCAGTGCATGACAAGGAACACAACCAGTCTCCAAAATAAGTATCTGGGTGTGTCCCTCACCCTTCCTGCCCACCTCTGACCTGCAAGATGAAACTGAAAGAGGACATGAACCCGCTGCTGCTGCAAGTCTTCCGCTCAGTGGTCTGGGTCTGCTCTTTCATTACCTTCCTGCCATGGTACTTCCTCTCGGGTGCCGGCACCAACCTAGACCGGGCACGGCGGGTCAAGGCGCGGTCGGTGAGTGGGCGTCCAGCGGGCCCTTACCGGGCGACCAACCAAGCGGGCGGTATCCATCAGAAGCTGGTGTGGTCCTTGCACCTGGGGGTGGACACCCTGGACAAGGTGATGGTGCACGGGGCGACCAGGTTCCCAGAGAGGGACTGCCTGGGCACCAGAGAGGTGTTGAACGAGGAGGACGAGCTCCAACCCAACGGGAAGGTCTTCAAGAagGTTATCCTAGGGGAGTATCAGTGGATGTCGTACGAGGAGACCTACCAGGCAGCAGTGTGTTTTGGCAGTGGTCTGGCTGCGCTGGGCCAGAGGCCTCAGTGTAACATCGCCATTTTCTGTGAGACCAGGGCTGAGTGGATGATAGCAGCACAGGCCTGCTTCATATACAACTTCCCATTGGTGACGTTGTACTCTACTCTGGGCGGAGCGGCCATCGCCCACGGTCTCAATGAAACAGAGATCACCCACATCATTACCAGCAAAGACCTGCTACACAGCCGTCTCAAGgcGATCCTGTTAGAGGTGCCTCGGCTGCAGCACATTATCGTGGTGGACAGTAAGCCAACCAGCTGGCCTGGCTTCCCCCGCGGCATCATGGTCCACAACTTGGTCGCCGTGCAGGAGCTGGGCTCTCGACCCGACAACATGGCGGTGGCACGCCGGCAGCCCCTGCCCTCTGACATCGCTGTCATCATGTACACCAGCGGCTCCACCGGCATCCCCAAGGGTGTGATGATCTCCCATAGCAACATCATCGCGGGCATCACGGGCATGGCAGAGCGCATCCCAGACCTGGATGAGACAGACACCTACATTGGGTACCTACCGCTGGCTCATGTTCTGGAGCTCAGTGCAGAGATGGTGTGTATCTCTCACGGCTGCCGCATCGGATACTCCTCCCCACAGACGCTAGcagaccagtcGACAAAGATTAAGAAGGGCAGTAAAGGAGACACCAGTGTTCTGAAGCCTACACTCATGGCTGCTGTACCTGAAATCATGGATCGCATCTATAAGAATGTGATGACCAAGGTGGAGGAGATGAGCAGTGTGCAGAGAACCCTGTTTGTGTTGGCCTACAACTATAAGATGGAACAGATGACCAAGGGCTACAGGACCCCGCTCTgtgacagtctggtGTTTAGGAAGGTGCGCTCGTTGTTAGGAGGTCACATGCGGGTGCTGTTGTCAGGCGGCGCGCCCCTTTCTGCCGCCACACAACGCTTCATGAACATCTGCCTCTGCTGTCCCGTGGGCCAGGGCTATGGCCTCACTGAGACCTGCGGAGCTGGCACCATCAgtgagaTGTGGGACTACAGCACAGGCCGGGTCGGAGCTCCTCTGGTCTGCTCTGAGATCACCCTCAAGGACTGGGAAGAGGGCGGttactacagcacagacaagcccAACCCAAGAGGTGAGATTGTGATCGGCGGGCCCAATGTGACCATGGGTTACTACAAGAACGAGGTGAAGAACCGCGAGGACTTCTTTGTGGACAGCAACGGCCAGCGCTGGTTCTGTACGGGAGACATCGGGGAGCTCCACCCTGACGGCTGCCTCAAGATCATCGACCGTAAGAAGGACCTGGTGAAGCTCCAGGCTGGGGAGTATGTGTCTCTGGGGAAGGTGGAGGCCATGCTGAAGAACTGCCCTTTCGTAGACAACATCTGTGCTTACGCAAACAGTGACCAGTCATATGTGATTGGCTTTGTGGTGCCCAATCAAAAGCAGCTGACAGTGCTGGCGGAGCAGAGAGGGTTAcggggcagctgggaggagatcTGTAACAACCCTGACATGGAAAGAGACGTCCTCCGCATCATCACCGAGGCCGCCctgtcagCCAAACTTGAGCGCTTTGAGATCCCTAAGAAGATCCGTCTTAGTGCAGAGCCCTGGACCCCAGAGACTGGCCTGGTTACGGACGCATTCAAACTCAAACGTAAGGAGCTCAAATCACATTACCAGGATGACATCGAAAGGATGTACGGTggcaagtaacacacacacacacactctctaagaCACACACAGGTAAAGACATATGCAAGGAATCTAAAAAACACTACCACGATGACATGGAGACTGGAGAGGATGTACGGCGGcaagttaaacacacacacacacagagggagagaggaggaacgaCCCATTGTACTTTCTCAACCTCTTGACTTCTCTTCCGACTAGTTACAATCAAACGGAAAATAACTCTGGAAAATAACTGTCAGTCAATCCAGACCCCCAACAAAGACGGAGAGGCCAAGCCAGTTGGAGTGACATCCGTTGCTTCTCTTCTTCAAAGGTTTTTCTGGGTCTGTGTGTTGCTATGATGACGATGGCATCGTTGACATGACCCGGTCGGAGACACAGGAAATTACAAGTTTGTACAAACGACTGCTTCGGGCACTATGTTC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2425625 lncRNA downstream 2855 25209088 ~ 25212487 (-) False G2121436
TU2425626 lncRNA downstream 2855 25209088 ~ 25212487 (-) True G2121436
TU2425629 lncRNA downstream 12025 25201914 ~ 25203317 (-) True G2121438
TU2425632 lncRNA downstream 57609 25156177 ~ 25157733 (-) True G2121441
TU2425603 lncRNA downstream 97610 25117509 ~ 25117732 (-) True G2121417
TU2425748 lncRNA upstream 96912 25329442 ~ 25330859 (-) True G2121549
TU2425780 lncRNA upstream 165082 25397612 ~ 25397848 (-) True G2121580
TU2425799 lncRNA upstream 189598 25422128 ~ 25422360 (-) True G2121599
TU2425810 lncRNA upstream 209563 25442093 ~ 25442306 (-) True G2121610
TU2425841 lncRNA upstream 247021 25479551 ~ 25479841 (-) True G2121641
XM_036966397.1 mRNA downstream 538190 24664869 ~ 24677152 (-) False LOC110508783
XM_021589598.2 mRNA downstream 538191 24664869 ~ 24677151 (-) False LOC110508783
XM_021589599.2 mRNA downstream 545713 24664869 ~ 24669629 (-) False LOC110508783
XM_021589597.2 mRNA downstream 557475 24628922 ~ 24657867 (-) False LOC110508781
XM_036966783.1 mRNA upstream 111920 25344450 ~ 25365071 (-) False LOC110508789
XM_036966784.1 mRNA upstream 111920 25344450 ~ 25412332 (-) True LOC110508789
XM_036966015.1 mRNA upstream 449788 25682318 ~ 26069267 (-) False LOC110508791
XM_036966012.1 mRNA upstream 449788 25682318 ~ 26069268 (-) False LOC110508791
XM_036966014.1 mRNA upstream 449788 25682318 ~ 26069268 (-) False LOC110508791
TU2425635 other downstream 66822 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 480355 24730674 ~ 24734987 (-) True G2120836
TU2424934 other downstream 545776 24664874 ~ 24669566 (-) False LOC110508783
TU2423555 other downstream 1885727 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 2607536 22594533 ~ 22607806 (-) True G2118200
TU2426633 other upstream 634771 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other upstream 714203 25946733 ~ 25950453 (-) True G2122515
TU2429842 other upstream 3312411 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 3312411 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 3394525 28627055 ~ 28685735 (-) True G2125253

Expression Profile