RNA id: XM_036966012.1


Basic Information

Item Value
RNA id XM_036966012.1
length 4559
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110508791
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 25677135 ~ 26069268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGCTGTCTTGCCCACTTCTCACTCGCCTCCATCCCATACATTCGACAGGGTCCTACACTGGTTGTCACACAGTTTTAGTACGGCTGGAAATGTGACTCTCGTAACACGGGCTTACTGACTGGAATGAATACACCGCTCTGTGACAACCGAAGCGATTTTTTTGTGTGCGTGTCCTGCGTGGTTCTCAGTGGATAGGCATATAGACTGTGTGGACTATACATTTCTGCCATGACTGTGGATTTGTTTGCAGTTTTATGtgtcatcatcaccaccaccacggtTTCTGCGATGGAAGaaACGTTGATGGACACTCGGGTGGCTACTGCTGAGCTAGGCTGGACGGCCTACCCTGCATCTGGGTGGGAGGAGGTGAGCGGCTACGACGAGAACCTCAACACCATCCGGACCTACCAGGTGTGCAACGTGTTTGAGCCCAGCCAGAACAACTGGCTTCTCACCACCTTCATCGACCGACGTGGAGCTCAGAGGATCTACGTGGAGATGCGCTTCACCGTGCGTGACTGCAGCTCCATCCCCAACGTTCCCGGCTCCTGTAAGGAGACCTTCAATCTCTACTACTACGAGACGGACTCGGTCATCGCCACCAAAGGAActgccttctggatggaagcccCTTACCTAAAGGTGGACACCATCGCGGCCGATGAGAGCTTTTCCCAGGTGGACTTCGGCGGACGATTGATGAAGGTCAACACAGAGGTTCGGAGCTTTGGCCCGCTGTCGAAGAACGGGTTTTACCTGGCGTTTCAGGACTATGGTGCTTGTATGTCGCTACTCTCGGTCCGAGTGTTTTATAAGAAGTGCCCCAGTGTGGTGCAGAACTTCGCCATCTTCCCAGAGACCATGACGGGGGCGGAGAGCACCTCCCTGGTCATCGCTAGAGGGATCTGCATCCCGAATTCGGAGGAGGTGGACGTGCCAATAAAGCTGTACTGCAATGGAGATGGAGAGTGGATGGTTCCTATCGGGAGCTGCACCTGCAAAGCTGGGTTCGAGACAGATAACGGGAATGTCTGCCGAGCCTGCCCCCCAGGGACATTCAAGTCGAGCCAGGGTCCAGGTCTGTGTTTGCAGTGCCCCTCCAACAGCCGCTCTGCAGCCGAGGCCGCCACTATCTGCGCCTGCCGCAACGGCTACTACCGTGGGGACGTAGACCAACCTGACATGCCCTGTACCAGCGTTCCCTCGGGCCCGCGGAACGTGATCTCCGTCGTGAACGAGACTTCGGTGATCCTGGAGTGGCACACGCCCAGGGAGACGGGCGGTCGTGAGGATGTGGTCTACAACATCGTGTGTAAGAAGTGTCGTGCGGACCGCCGTACCTGCTCGCACTGTGATGACAATGTGGAGTTTGTGCCTCGGCAGCTTGGCCTGACAGAGACCAGGGTGTTCATCAGTAACCTGTGGGCTCACACGCTGTACAGCTTCGAGATACAGGCTGTAAATGGGGTCACCAACAAGAGCCCTTACCCTGCCCAGCATGTGTCTATAGACATCACCACCAACCAGGCTGCCCCCTCGATCGTACCCATCATGCACCAGGTGAGCTCCACCATGAAGAGCTTCACGTTGTCATGGCCACAGCCCGAACAGCCCAACGGAATCATCTTGGACTACGAGCTACGCTTCTATGAGAAGGACCATGCAGAGATTAATTCCACCATGGTGCGCAGCGAGACCAACACAGCCCGCGTGGAGGGCCTCCGGGCAGGCACGGTCTACGTCGTGCAGGTGCGGGCCAGGACTGTGGCTGGCTTTGGCAAATACAGCGGCAAGATGTGCTTCCAAACCCTCACAGATGATGACTATAAATCAGAGTTGAGGGAGCAGCTTCCTCTGATTGCTGGCTCGGCTGCAGCAGGATTGGTGTTCATCGTCTCTCTAGTGGCCATCTCCATCGTCTGCAGCAGGAAACGGGCGTACACCAAGGAAGCGGTGTACAGCGACAAGTTACAGCATTACAGCACAGGAAGAGAGCTCTCCCTGAGAGCCGACATGTCTAACTGCCCCTCCCCAATGGGCTGCCCGACCCACTTCTCAGGCTCTCCGGGGATGAAGATCTACATCGACCCCTTCACTTATGAGGACCCTAACGAGGCCGTCCGGGAGTTCGCCAAGGAGATCGACGTCTCCACTGTCAAGATCGAAGAAGTCATTGGCGCAGgtgAGTTTGGTGAGGTGTACAAGGGGCGTCTGAAGCTGCCAGGCAAGAGGGAGATCTACGTAGCCATCAAGACCCTGAAGGCAGGATACGTGGAGAAGCAGAGGCGGGACTTCCTGTCTGAGGCGTCAATCATGGGACAGTTCGACCACCCCAACATCATCAGACTGGAGGGCGTGGTCACCAAGAGTCGGCCAGTCATGATCGTCACAGAGTTTATGGAGAATGGGGCCCTCGATTCCTTCCTGAGGCAAAACGACGGTCAGTTCACTGTAATCCAGCTGGTGGGCATGATGAGGGGCATCTCGGCGGGCATGAAGTACCTCTCTGAGATGAACTACGTCCATAGAGACTTGGCTGCCCGCAACATCCTGGTCAACAGCAACCTGGTCTGCAAGGTGTCCGACTTTGGACTTTCGCGCTACCTTCAGGACGATACCTCTGACCCCTCCTACACCAGCTCTCTGgggGGTAAGATCCCGGTGAGGTGGACGGCTCCAGAGGCCATCGCCTACAGGAAGTTCACCTCAGCCAGTGACGTGTGGAGCTACGGCATCGTCATGTGGGAGGTGATGTCATTCGGAGAGAGACCCTACTGGGACATGTCTAATCAGGATgTGATCAATGCCATAGAGCAGGACTACCGGCTACCCTCTCCCATGGACTGCCCCTCGGCCCTGCACCAACTCATGCTGGACTGCTGGCAGAAGGACCGCAACGCCCGGCCACGCTTCACTGACATCGTCAACACCCTGGACAAGATGATCCGCAACCCAGCCAGTCTCAAACAAGTGGCCAGCATCCCTGCAGTgcCTTCCCAGCCCCTGTTGGACCGTTCTATCCCGGACTTCAACACCTTCAGTTCAGTGGGAGAGTGGCTGGGAGCCATCAAGATGACCCAGTACAGAGACAACTTTCTCAACTCTGGCTTCACCTCCCTGCAACTGGTAGCACAGATGACCTCtgaaGACCTCCTCAGGATAGGTGTTACCCTTGCGGGCCACCAGAAGAAGATCCTGAGTAACGTTGCCTCCATGCGGGTCCAGATGAGCCAGTGCCAGTCGCCCACCACCATGGCATGACTGGAGGGGGCGCCGTGCCACGGGTCGGGCAGCATTCAGGCAGGCAGGGACTACAGCAGGAAGGACTACACCCCTCACCGAATGACCCCCAACCCGTCAGGACGCGCCAGGGTCGAGACTATCATCCTCATCTAATGGAACATCATAATAGCAGTAGACCAGGGTCCAGACCAATACTAACTCAATATCACCTTCCACTAATCTGAGTTATAATGAGTTATGATCCAGAGTTCAGTGGGTTCAGATAATGTTTTTTCTAATCTTAATCTGTGAGTTCTACAGTCCTGGAGTCTGGAGTGGACAGATTATCATCCTAGTCTGAACTATCCCAGAGTTCCATGGGTTCAGATATTTTTGTCACATCTTAATCTGTGGCCATGGACTATACTATCATCCATGGATTATCATCAGTGTGTAGGCCTGTGTAATTTCACATCTGGAGCacatggtatatagaatatgatCGTATTGTACTGTAATCTAACCCCAGACCACCACAGGCTGACACGGTGATGGAGTCTGGGACTATCAGATGTATATCTTTACTGGATGATGGTAGACTGGAGAGGAGGACCAAGTGGAAGCCATTTTGAAGAGGAAGTTCATGTCATCAGAAGGTCTCTGATATGTCATTTGAACCCAGGCCTTCTTCAAAGACTAGTGAGGATGCTTGGCCTGGCTAGGAGCAGCGGTATGAAATGCGCGTAGGAAGAAAGCAATTCAAATCCACCATACATTGTCATTATACACACATACGGAAATTGATACAGAGGCATACAGTGGTGTATGGTTGATTTGGTTTGACCATTTctcaaattgtattttttcttCATTCAAAACTTTTGACATCTTGGAGATCTCCTCAAGGTCAACAGTTGAACCGGCGGGAAAGGAGAGCTTTTGAGACATTTGTTGAtatcttgttttgttttttaaccaTAAAAGCAGGGAACTCAGATCTCTCTTCCATTTTTTCACCTTAACACTACCTGTCGATGTCTGGGCTGATGGCCTTGCCAAAGGACTAGTGAAACAGCCTCGCCCAGATTCTGAGAATATATACAAATATGTATATCTCTAACTCAATATGAATATATCTTCAGAATAAATCTTCATATTGAAGGTGATGTGTATGAATATGTATGTGCAAGACTCTCTCTGCTTGCATTTTTGGCAAAGATTACGTTTTTGTGCACTGAATTGTAATGGAGATGGACACATATAATGCTGAGGGGTCACAATCCTGAAATAACTTTGACCTGGAAATAAATGTACAAAGGACCATGTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2425964 lncRNA downstream 89528 25592438 ~ 25592790 (-) True G2121760
TU2425954 lncRNA downstream 98414 25583660 ~ 25583904 (-) True G2121750
TU2425934 lncRNA downstream 109601 25572384 ~ 25572717 (-) True G2121730
TU2425930 lncRNA downstream 111764 25570350 ~ 25570554 (-) True G2121726
TU2425855 lncRNA downstream 184977 25497109 ~ 25497341 (-) True G2121655
TU2426922 lncRNA upstream 51882 26121150 ~ 26121951 (-) True G2122613
TU2426923 lncRNA upstream 54207 26123475 ~ 26123898 (-) True G2122614
TU2427020 lncRNA upstream 192862 26262130 ~ 26262501 (-) True G2122701
TU2427030 lncRNA upstream 212727 26281995 ~ 26282361 (-) True G2122709
TU2426977 lncRNA upstream 226633 26295901 ~ 26296608 (-) True LOC110508194
XM_036966784.1 mRNA downstream 269986 25344450 ~ 25412332 (-) True LOC110508789
XM_036966783.1 mRNA downstream 317247 25344450 ~ 25365071 (-) False LOC110508789
XM_021589613.2 mRNA downstream 449788 25215342 ~ 25232530 (-) False LOC110508788
XM_036966572.1 mRNA downstream 449788 25215342 ~ 25232530 (-) True LOC110508788
XM_036966397.1 mRNA downstream 1005166 24664869 ~ 24677152 (-) False LOC110508783
XM_036965987.1 mRNA upstream 61159 26130427 ~ 26266904 (-) True LOC110508193
XM_036966674.1 mRNA upstream 226506 26295774 ~ 26558418 (-) False LOC110508194
XM_036966675.1 mRNA upstream 226506 26295774 ~ 26558418 (-) False LOC110508194
trnam-cau-2 mRNA upstream 490979 26560247 ~ 26560319 (-) True trnam-cau-2
trnag-ucc-234 mRNA upstream 491612 26560880 ~ 26560951 (-) True trnag-ucc-234
TU2425648 other downstream 407692 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 533798 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 947331 24730674 ~ 24734987 (-) True G2120836
TU2424934 other downstream 1012752 24664874 ~ 24669566 (-) False LOC110508783
TU2423555 other downstream 2352703 23325001 ~ 23329615 (-) True LOC110508185
TU2429842 other upstream 2475673 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 2475673 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 2557787 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 2593440 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 2622871 28692139 ~ 28692470 (-) True G2125290

Expression Profile