RNA id: XM_036966674.1


Basic Information

Item Value
RNA id XM_036966674.1
length 2963
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC110508194
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26295774 ~ 26558418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaagcgtGCACGCAGTCGAACAGCGCCTGTGTTGAGAGTGGTACATCTACAAATCTTGGTCCACAATACCGTCTCATATAAACTCAGTGTGGGATTGCCTTTATGCACAAAAAACAATAATGTGAGAACCCGATGCAGACGTCGTATCATGGACGTTTAATAGTATCAACTGCTACTTTTTATTTGTGTCATACATTTTTTAACAGGCCGTGAAATCATCGATTTACACTAAACCCACGGATACCTGGATTGAGATGCAGCAATGTCCCGAGGAATATGCCCACGCGTACATTTCTGGTGGATGTTTTCAGTTCTGTTTCTGGTGAAAGTAGTGGATGTTGGGGCATACAGCTGTCATGAGGTGAAGACCGCTTTCCAGGTGCGACAGATCGGCCCACTGAAGTGGGTACCGGAGACTCCTGGGACAGATGTGGAGCTGTTGGTGTGTAAGCACCAGGGCCCGTCCTGCTGCACCCGCAAGATGGAGGAGAGCTACCAGGTGGCGGTGAGACGAGAGACCCTCCAGAATGTCCGCTCCTACAGCTTCGAGCTGAAGTACCTCATCTCCGGCCACGCTACCGCCTTCCAGGACACCTTCCAGTACCTGCTCTCCTTCTCCCAGGGCCACCTCTCATCCCTGCTAGAGGACACCTACTCGCCCCTCTCCCGCGAGGCCCTCCCTCATGTCAatgtcctcttctcttccctctccctttaCATCCGTGGACACAACCTCTCCCTCGAGGCCGCAATCACACGTTTCTACGACAACCTCTTCCCACTCGTCTATGTACGCTTGGTCAACCCCGGCATGGGTGCGGCGGGCAAGAGGGGCGAGTGTCTCCGCGCGACCCGGCAAGACGTCAACCCGTTTGGCCCTCATCCCGATACGCTTGCCCAAGAACTCAGGCGCGCCCTGGGCGCCGGGCGAGCCCTATCCCTCGCCCTCGCCGAAGGCACTGAGGTCATGAACGCCACAGAACACGTTTCCCTCACCAAAGAGTGTTTACGGGGCTTGACCAAGATGCAGTACTGCTCGCACTGTCGCGGGCTGACGCTGATCAAGCCGTGCATGGGCTACTGCTTGAACGTGATGCGCGGTTGCTTGGCGAGCGTGGCCGAGCTGGATGGGCCGTGGCGGAGGTATGTGGCGGCACTCGAGGAGCTGACCCACGCGGTGGCTGGACAACACAGCCTGGAGCTGGCCCTGCTGGGGGTCAGGGGGCACGTGAACGAGGCTATACTCCATGCACAGCTCCACGGGCCAACACTGACCACTACGGTAGATAAAGTGTGTGGTCTGTCTGGTGAGGAGCCCACCACCAGTGTCCACCCTGACCCTACCCCAGAGTTCATGACCCCCACGGTGACATCATCAACTGCCCCTCCCTCTATCATCCCCTCCATTCCCCCACAGGAACAGCTGATGGGAAACCTTGCCCACCTGAGGAGTTCATTCACCCTGAAACACTCCAGGAATGATAAACCTAGAAGTCTGAAAAAGATCTCTAGgGAGTTTCTGAGCTACGTCCAGCGCTACAAGTTGTTCTTCGCGGTGCTGCCGGAGATGCTGTGTGAAGGAGAGACGGTGGTGGAGGACTTCACCTGCTGGAGCGGAGACGACGTGGTGGAGAGttATACAGGCAGAGTGGTGGGGAACGGTCTCCAGGCCCAGAAGCAGAACCCAGAGGTCAAAGTTCGCAGCCCTAACCCAGAACTAGCTGAGGTCAAGGAGAGGCTGGAGCGCTTCAACCAGGAGATCCAGGACATGCTGCCGGGGCTGGGCCAGAGAGAGTCCTGGGGGGAGCTGGGTAGCAGCGACACAGAGGACGGTAGTGGAGACTGCGACGATGAGGACGGGTGTCAAGGGTCTGGAACGGGGGCAGTCAAGACCTtcacTGATGGTCGACCAGGGGGGTCCAACAATGATAAGGCTGTAGGCAGTAACCCAGGAGGTCGTGCTCCCCCGGTGGTGAGGGTGAGAGGTGCTGGGTGcccccctgcctgcctgtctctacCCATGGCCCTCACCTTGCTCCTGGCCACTCTGGCTCTACAGTGGCGCCTGCTCTGAAAACACAGCATAATGCCCCTACAGGCCTggcccctctacacacacagtacagactagTCTGTGGGGGGTAGGCAGTGTGGATAAGGACATTTGTGGGGGCGGAAAGGGATTGTGTTGCCCCATAGAGACGTGTGTGTGAACgagctcctcacacacacacacacacactcatacacaggcAGATTGTTCTGGTCCTCTGCCTGCTGCCTCCTGTGTGTATGCTGTGGACTGGAGTGTCTGTGTCCAGGCACTAGCCTCCCTCCACAGCTCTATTGCTCTCTGCTTTAACAATGCACTCATATCTCTATCAGAGGACGGACTACCACGCAGGACTTCTGGGCCTCAATATACAACACACACTCATGCGCATgcttgcacacacaaacactaacacaggcaagcatgcacacacacacacacacacacaaaagacacGCTGGCaccctttaacacacacacacacacacacactgtaacctgTAACCTTTCTGCTGCTGTTTTCTATGTGGTCAGCTACAGAACTTGCCTCTGTAGACACTTTGCCTCTCTAGCCAATCCTGTCCTGGGTTTTAAAGTCATTGGGCAGAGTTCACTTAATTTTAAAACTCTCAActgtttattttaatacatttaagGAATGCGTGCTAGATTAATAAAACAACCACCTTTTACCAGGCCAGCATAGCTGATTGGATACGCTCTAATGATCAtacaagtgccttcagaaagtattcacacctctctACTTTTacacgttttgttgtgttacagcctgaatttaaagttgattaaattgagatgttgtgtcactggcctacacgcaataccctataatgtcaaagtggaatgatgtttttagacatttttacaaattaataaaaaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427030 lncRNA downstream 13413 26281995 ~ 26282361 (-) True G2122709
TU2427020 lncRNA downstream 33273 26262130 ~ 26262501 (-) True G2122701
TU2426923 lncRNA downstream 171876 26123475 ~ 26123898 (-) True G2122614
TU2426922 lncRNA downstream 173823 26121150 ~ 26121951 (-) True G2122613
TU2426818 lncRNA downstream 343337 25951933 ~ 25952437 (-) True G2122518
TU2427171 lncRNA upstream 55377 26613795 ~ 26614108 (-) True G2122847
TU2427182 lncRNA upstream 65797 26624215 ~ 26624435 (-) True G2122858
TU2427344 lncRNA upstream 127307 26685725 ~ 26688170 (-) True G2122986
TU2427345 lncRNA upstream 131076 26689494 ~ 26689708 (-) True G2122987
TU2427347 lncRNA upstream 134583 26693001 ~ 26693251 (-) True G2122989
XM_036965987.1 mRNA downstream 28870 26130427 ~ 26266904 (-) True LOC110508193
XM_036966012.1 mRNA downstream 226506 25682318 ~ 26069268 (-) False LOC110508791
XM_036966014.1 mRNA downstream 226506 25682318 ~ 26069268 (-) False LOC110508791
XM_036966015.1 mRNA downstream 226507 25682318 ~ 26069267 (-) False LOC110508791
XM_036966784.1 mRNA downstream 883442 25344450 ~ 25412332 (-) True LOC110508789
trnam-cau-2 mRNA upstream 1829 26560247 ~ 26560319 (-) True trnam-cau-2
trnag-ucc-234 mRNA upstream 2462 26560880 ~ 26560951 (-) True trnag-ucc-234
trnag-ucc-235 mRNA upstream 5174 26563592 ~ 26563663 (-) True trnag-ucc-235
trnag-ucc-236 mRNA upstream 7070 26565488 ~ 26565559 (-) True trnag-ucc-236
trnag-ucc-237 mRNA upstream 9782 26568200 ~ 26568271 (-) True trnag-ucc-237
TU2426633 other downstream 226565 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 345321 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1021148 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1147254 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 1560787 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1986523 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1986523 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 2068637 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 2104290 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 2133721 28692139 ~ 28692470 (-) True G2125290

Expression Profile