RNA id: trnag-ucc-235


Basic Information

Item Value
RNA id trnag-ucc-235
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnag-ucc-235
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26563592 ~ 26563663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgttggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaacgcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427164 lncRNA downstream 10035 26553340 ~ 26553557 (-) True G2122841
TU2427159 lncRNA downstream 20647 26542286 ~ 26542945 (-) True G2122836
TU2427157 lncRNA downstream 25133 26538250 ~ 26538459 (-) True G2122834
TU2427147 lncRNA downstream 51615 26511729 ~ 26511977 (-) True G2122824
TU2427146 lncRNA downstream 53837 26509497 ~ 26509755 (-) True G2122823
TU2427171 lncRNA upstream 50132 26613795 ~ 26614108 (-) True G2122847
TU2427182 lncRNA upstream 60552 26624215 ~ 26624435 (-) True G2122858
TU2427344 lncRNA upstream 122062 26685725 ~ 26688170 (-) True G2122986
TU2427345 lncRNA upstream 125831 26689494 ~ 26689708 (-) True G2122987
TU2427347 lncRNA upstream 129338 26693001 ~ 26693251 (-) True G2122989
trnag-ucc-234 mRNA downstream 2641 26560880 ~ 26560951 (-) True trnag-ucc-234
trnam-cau-2 mRNA downstream 3273 26560247 ~ 26560319 (-) True trnam-cau-2
XM_036966674.1 mRNA downstream 5174 26295774 ~ 26558418 (-) False LOC110508194
XM_036966675.1 mRNA downstream 5174 26295774 ~ 26558418 (-) False LOC110508194
XM_036965987.1 mRNA downstream 296688 26130427 ~ 26266904 (-) True LOC110508193
trnag-ucc-236 mRNA upstream 1825 26565488 ~ 26565559 (-) True trnag-ucc-236
trnag-ucc-237 mRNA upstream 4537 26568200 ~ 26568271 (-) True trnag-ucc-237
trnag-ucc-238 mRNA upstream 6433 26570096 ~ 26570167 (-) True trnag-ucc-238
trnag-ucc-239 mRNA upstream 9145 26572808 ~ 26572879 (-) True trnag-ucc-239
trnag-ucc-240 mRNA upstream 11857 26575520 ~ 26575591 (-) True trnag-ucc-240
TU2426633 other downstream 494383 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 613139 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1288966 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1415072 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 1828605 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1981278 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1981278 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 2063392 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 2099045 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 2128476 28692139 ~ 28692470 (-) True G2125290