RNA id: TCONS_00055424


Basic Information

Item Value
RNA id TCONS_00055424
length 530
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_028572
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11401018 ~ 11404967 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAAGGGCTTCTGGAAGTGGCCAGACTTCCTTTGCAAGACTAGAACATACGACCTCGTCCAGGCCACGAAGGAATACCATGAAGCCCTGttaaaacaaaaagttttttgTCAGCCCATTGAAACACCCATTGGGCCTAATGAGGTTCCTGAAgcgaaaaaggaaaaaaagggcTTCTGGAAGAGAGTCACTTGTCTCTTCACTTCGAAGTCTAGTAGAGGTTGCTGTGAAATGTACTGTAAAGTCATCGAAGATGAAGGAAATCACAGTGAATGCTGCCAGATGATCTGCGGttgtctgcagccagacccagATGAGAGACTCGCTCTGCAGGAGATGCATCTCCATAACTGGTTTAAGGTCATGGAGTAAGACAGGAGAAACAACTCAGCAACCCTAGCACACCTGAGGACTGCTGCATTGGATTGctctttgtattgtattgttgcCTTGTCAACTTCTGTAATAATGCAGGGCAACTTACATATGAGTGCCTTTGTTGATTAATTAATATGTCATGAATGTTTTGA

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-89 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000136981

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055422 lncRNA downstream 152836 11245332 ~ 11248285 (-) True XLOC_028571
TCONS_00055421 lncRNA downstream 214185 11179509 ~ 11186936 (-) True XLOC_028570
TCONS_00055416 lncRNA downstream 275471 11124613 ~ 11125650 (-) False XLOC_028568
TCONS_00055415 lncRNA downstream 275955 11124613 ~ 11125166 (-) False XLOC_028568
TCONS_00058100 lncRNA downstream 588834 10793666 ~ 10812287 (-) False XLOC_028555
TCONS_00055430 lncRNA upstream 171878 11576845 ~ 11580944 (-) False XLOC_028573
TCONS_00055434 lncRNA upstream 205751 11610718 ~ 11637236 (-) False XLOC_028576
TCONS_00055435 lncRNA upstream 205751 11610718 ~ 11637392 (-) False XLOC_028576
TCONS_00058101 lncRNA upstream 205751 11610718 ~ 11690612 (-) False XLOC_028576
TCONS_00058102 lncRNA upstream 205751 11610718 ~ 11691616 (-) False XLOC_028576
TCONS_00055418 mRNA downstream 235160 11144600 ~ 11165961 (-) False XLOC_028569
TCONS_00055419 mRNA downstream 235510 11146618 ~ 11165611 (-) False XLOC_028569
TCONS_00055420 mRNA downstream 238009 11148642 ~ 11163112 (-) True XLOC_028569
TCONS_00055417 mRNA downstream 268504 11124614 ~ 11132617 (-) True XLOC_028568
TCONS_00055414 mRNA downstream 278483 11112580 ~ 11122638 (-) True XLOC_028567
TCONS_00055427 mRNA upstream 168601 11573568 ~ 11580948 (-) False XLOC_028573
TCONS_00055428 mRNA upstream 168601 11573568 ~ 11594202 (-) False XLOC_028573
TCONS_00055429 mRNA upstream 169940 11574907 ~ 11577253 (-) False XLOC_028573
TCONS_00055431 mRNA upstream 172942 11577909 ~ 11603149 (-) True XLOC_028573
TCONS_00055436 mRNA upstream 327189 11732156 ~ 11751037 (-) False XLOC_028577
TCONS_00055389 other downstream 739444 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 2813213 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3259655 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055313 other downstream 3525191 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 3525361 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055432 other upstream 201791 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 203229 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 870147 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 1008452 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 1190713 12595680 ~ 12595804 (-) True XLOC_028597