RNA id: XR_002471365.2


Basic Information

Item Value
RNA id XR_002471365.2
length 5405
RNA type mRNA
GC content 0.55
exon number 20
gene id LOC110508801
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26714593 ~ 26741871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGGGCGGAGCTCAAAATGAGGTCACTCTAAAGCGCTAGGGATATGACTATGACGAAACTCGAACGCtaggtgtagagtagtgtagtgtgtcAAACCAAAGCCTGAATTACCGGGAAGCAAAATAAAACGATTAGTTTTGCAAACCAACAGAAGTCGTTGAAATCACAGAAAAGAGACGATAATCTACTTTAACTGGCAGCTCATCCATCCATTCTCTTTGGCATCTTGTGGACAATGGGGTGATTAAGTTTTGCTTCCTCCATCCTCTACTCAGCACTTCTCTGGTTTAAACCCTCAACACACCACACCTCCCTTCCTCTAATGTCAGATAATTCAGACCCAGACTGCAGCTCCATGGCTAGGGGGGCCTCAGGGTGCAGCTCCATGGCTAGGGGGGCCTCAGGGTGCAGGTCCATGGCTAGGGGGGCCTCCGGGTGCAGGTCCATGGCTAGGGGGGCCTCAGGGTGCAGGTCCATGCCCAGGGTGGTCTCAAGGTGCAGCTCCATAGCCCAGCTTCATTGTAGGAGCAGCTATAGCCAGGTTGGTCCAGGCCTGGGTCTAGCCTCAGAAGGCAGTGACAGCAGTTGCCAGGACCCCTCGGCCTCACCCCACATTGGCCGTAGGAGCGCCTGCTCATGTTCCTTCCACGACGACGTGGACATGAAGAGCAGTGGATCCAGCGGGACCGAGTCACACGGCAACGGGAGCCACGGAAGCCATGGAAACGAGAGTCACGGCAACGAGTCAACGGGTAGCTCTGATGGCAACAGCAGAGACTCGGCTCTCCTGGAGTCATCTGGGAGCAACAAGCGctCTAACTCCCACAGCCCCTCTCCTCCCAGTAGTTCCAATGCTTTCAGCCTGCTGAGTTCTGAGCAGGACAACCCCTCCACCAGCGGCTGCAGTAGTGAGGTGTCAGCTAAGGCCAAGACCCAGAAGGAGCTTCTCAGGACCCTGAAGGAGCTCAAGCGCCACCTTCCTGCTGACAAGAGGAACAAGGGCAACAAGTCCAGCTCCCTCAACACTCTGAAATACGCCCTGCGCTGTGTCAAACAGGTGGAAGCCAATGAGGAGTACTACCAGCTGTTGATGACCAATAACAGTCAGCCATCCGGCCTGGGTGTGTCCTCTTACACCATCAAGGAGATAGACAGCATCACCTCAGAGTACACCCTCAAAAACAATGACAACTTTGCGGTTGCGATATCTCTGATCACGGGGAAGATCGTCTACATCTCAGACCAGGCTGCCTCTATCCTCAACTGTAAAAGGGGCGTCTTCAAGGACGCTAGGTTTGTGGAGTTCCTGACTCCCCAGGACGTCAGTGTTTTCTACAGCTTCACCACGCGCTACCGCCTGCCCTCCTGGAGCATGTGCCCCGGAGCAGAGTCCTCCCCGTCGGATTGCATGCGGGAGAAATCCTTCTTCTGTCGGATCAGTGGGGGTAAGGAGTGTGAGGGGGACCTGCAGTACTCCCCGTTCCGTATGACCCCCTTCCTGATGAAGGTGCAGGACAAGGTCCATTCTGAGAACCAGCTCTGCTGCCTCCTACTGGCTGAAAGGTTGCATTCCGGCTACGAGGCTCCCAGAATTCCTAGCGACAAGCGCATcttcaccaccacacacactcctAGCTGTGTGTTCCAGGATGTGGACGAGAGggctGTTCCTCTCCTTGGTTACCTCCCCCAGGATCTGATTGGCACCCCAGTCCTTCTTCTCATGCACCCCAATGACAGGCAGAGCATGTTGGCCATTCACAAGAGGATCCTTCAGTATGCTGGCCAGCCGTTCGACTACTCCTCCATCAGGTTCTGCACACGGAACGGAGAGTACGCCATCATCGACACCAGCTGGTCCAGCTTTGTCAATCCCTGGACCTGTAAGGTCTCTTTCATCATCGGGAGGCACACAGTCCGCATGGGCCCGGTGAATGAGGATGTGTTCGAGGCCCCGCTCCCTGCCCTCATGGAGACCAAGATCATGGACTCTGAAGTCCAGGAGATCACTGAGCAGATCCACAGACTGCTACTGCAGCCGGTTCACAGCACTAGCTCCAGTGGGTACGTGGGAAGCAACGACCACCTTGCAGCATCCCAGGGAATGACCAGCGAGAGCAACACACATTCAACCAGagacatcaacatcaacagcAATGGTAGCAGCCCAAGCAGGACACGCAtcgaggaggagggggagagcagCTGGGCCAAACCTcAGAGGTCATTTGAGGGGATCTGTAAAGGTATCCACCTCCAGAACAGTCAGGAACAACAAATCTACAAAGCCTCCTCCTCAGCCAGGTCTGAGACCAAGAAGAACCCTGGCACAGAGTTCCTCCAGAAGAGTCCCGCGGCGGTGCGTCTCAAGGACACTGCAGCCCCCGTGGCACCTCTGAGCTGGAGGGACAGTGGGGCCACCCCCCTGGAGAACTGCAGGCCTGCAGTACAGGAGGAGCAGCTGGCCGTCAACGACCAGGCGGTCTACTCCTACCAACAGATCAGCTGTCTGGACAACGTCATCAGATATCTAGAGGGCTGTAACATTCCCATCGCTAGGAAGAGGAAGTGCCACTCTTCTGACAACACTTCCTCAGACGAGGACAAGCAGAAAGGAGGGGACAACCGCATGCAGATATCTGAAGACCCTGCGCTATATAAGGCTCAGCCTGGTTTAACCGCTGTGGATGACATCATCGCATACAAAAAGACTGAGGCTACGACCACAGCCTCAGGGGTAGTGGGCTCCTCCTCCCTGGCAGCCCTCGCCGTGCCACTGTGCAGCAAAACCGAGAGTGTGGTGTCAATAACAAGCCAGTGTAGCTACAGTAGCACCATCGTGCATGTAGGAGACAAGAAACTGCAGCCCGAGTCAGAGATCATTGAGGATGTATCTGGTGGTGGGGAGGCGGTGGAGCGGGTCAGCCAGACTCCTGGGCCTCCTCCTAGTGCTGTTTCACCTTCCAGCCTGCAGAGGGAGCCCTATAAAAAGCTGGGTCTGACCAAGCAGGTCCTAGCAACCCACACCCAGAGAGAGCAGCAGGCCTTCCTGTGTCGCTTCAGGGAGCTTCAGGGAGTCCAGGTCTTCCAGGCGAACTGTTCCCAATACCTGGAGCGCCAGAAGGGACAAGGTGCCACTGATGcTGTGCCCACTGTGCGCCCATGCAGGCAGGCCGAACCCGCTGCCCGTAGAAGTGGACGCAACAAGAAAACCAAGTCCAAGTGGGTAAAACAGAACGAGTTGTCCGATAGTTCTTTGTCCCATAGGAAGAGACAGCAGCAGCCCCGACCCCACCTCCTCAATCAGGGCCTCAACCAAACCTCCTGGTCCCCCTCCAACTCCTCCCAGTCCACCTTGCCGCCCCTGGCCTACCCCAACATAGTGCCAGCCTTCCCTCTCCAGGTCTACCCCGGGGTGGGCACCATGGCTGGAACCATGCCTACCAGCCTTGAGAATTCAATGCCAGGCTTCGGCGACAGTCAGTGCAACCAGAATCCCCAGTGCCCGGCACCAAACATCCAGCCCTCCCCCTTCTCTACTCCCATGGTGACCCCTGTGGTGGCTCTGGTTCTCCCCAACTACATGTTCCCTCAAATGGGGAGCGGGGCTCCAGGACAGCAGCCTTTTTACCAGGTCGAGACGGCAGGATACTCCTCCCAGCCACAGCCCTTCCTCCCACAGACATCCCTCACCTTCCCTGCCCAGGGTCCCTTCCTGGCACAGCCGCAGCCTTTCCCCCTTCAGACATCTCTTCCCTTCCCACCACAGTCATCCTCCACCAGCCAGGCCCAGTTCCCGGGCCAGAACCCTTTAGCCCCCCAGACAGGCTTCCCAATTCCCACCCAGCCTTTCTCTTCCATGGCCATGGAGCCCCCCAAGCCTTCTGGGGAAACCACCCAGTCTCGGGGCTCCACACCTGGGTCCATGGACGGCAGGGTCCAAGTGTCCTCCCCTCCAGTGTTCCAGTCACCATGCAGCTCACCCCTGCAGCTCAACTTACTGCAGCTGGAGGAGACACCATGCTCCCTGGAGAGGCAGCACAGCATGGTGGTAGCGCCCTCCAGTGGTGATCCACCGGGGAATAACACCTTCCGCGATAAGGGAAGGAGTGTGGTCTGCCAAGCCATGGAGAAGATCACGCTTCAGCAGTATGCAGCAGCCACACCAGCAAAAAGATCAGAAACTACTATGGCAGCGTGGATTCCTCCCGGAACAGCAGCCAGAAGGTCAAAGGGCACTCCACCGGCTGCGATAGTGGGAGAAGCAGTAGTGTCATGGAGGTGCGGCCAATGGAGATGGAGCAGGGCCAACATGACAAGTCCCATGGTTCAGAATACTGAGTGTGTATGTCCCTTGGCCTACTCAGGGGCATCGAGAGGTTgctcagagaggacagagagaggctgcGTGGGATGCAGAAGAGTCAGCCGTGCTTCACTGGGGAGCAGCAGAGGGAACTGGTAGAGGTCTACCCCTGGATGAGGAGTGGAGGGCTGCCCAAGGTCATGGACGTCAAGgcCTGTGTGTGCTTTGAGGAGGATGCTCCAGAGGCAGTGATGTCTGAGGAGCCGCCTGACCTAGACATGGGAGACACAGGGACTGAGACAGGCGAGGTCAGCCCCTCCAGGAAGCCCGGCGAGGAGCCCTTAAACACAGACACCTGCCCTTGTCCCTCTTCTGGCCTTGGATCATCATAGCCACATCCACACCCTGAATCCACCCTCAGCTGTTGATTGTAACATCAGCACTTCCTCCCAAGACTCGTTCTCAAGCGACATCAATTATTGACCAGGTCCCACCCTCAGACCAACAGCTGTCCCTGACCAGGGAATTACCATATTGGACTATCTAGTACTGCATGTGTCCTGCTGGTGGTACACACCTTTTCCACAACCAGCTAAACCGTATGGAAACTCTGCTACAGCCTGAGAGACCAACGGCCCACTTGGTCAATTCATtttctgtgtgtgaatgtgtgagagagagaaaaataaaatgaGATTGAGGttaggcaggtaacctagcggtgggcaggtagcctagcactCGGCCAGTAACCGAAGGTCGCTGGTTTGTATCggcgagccgactaggtgaaaaatctatcgaggtgcctttgagcaaggcacttaaccctaattccttttgtaagtcactctggatacgagcgtctgctaaattactaaaatgtcaaatgggTGAGTTCCAGTGTGTGCAAAACACTGTTCTTTCAATTCCATCCATCTCTTTTCCTGTGTTGTTTCACTGATTAAAAGTAATACTTTCACTGAAGTTTAAGACTTATAGTCTTGTTTTTGTGTTGATGGTAGCCAAGAATATGTAGTGGACTTGCTGTTTTTCAACTGTCTCTCAATATGagaaaaataaatataatttgaAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427335 lncRNA downstream 1664 26712155 ~ 26712929 (-) True G2122977
TU2427347 lncRNA downstream 21342 26693001 ~ 26693251 (-) True G2122989
TU2427345 lncRNA downstream 24885 26689494 ~ 26689708 (-) True G2122987
TU2427344 lncRNA downstream 26423 26685725 ~ 26688170 (-) True G2122986
TU2427182 lncRNA downstream 90158 26624215 ~ 26624435 (-) True G2122858
TU2427639 lncRNA upstream 64320 26806191 ~ 26831467 (-) True G2123218
TU2427696 lncRNA upstream 166082 26907953 ~ 26911066 (-) True G2123273
TU2427698 lncRNA upstream 169888 26911759 ~ 26912063 (-) True G2123275
TU2427703 lncRNA upstream 175138 26917009 ~ 26917214 (-) True LOC118944878
TU2427705 lncRNA upstream 179535 26921406 ~ 26921695 (-) True G2123281
XM_021589626.2 mRNA downstream 11675 26695459 ~ 26702918 (-) True LOC110508799
trnap-agg-158 mRNA downstream 88041 26626481 ~ 26626552 (-) True trnap-agg-158
trnai-aau-86 mRNA downstream 89593 26624927 ~ 26625000 (-) True trnai-aau-86
trnam-cau-4 mRNA downstream 95229 26619292 ~ 26619364 (-) True trnam-cau-4
trnam-cau-3 mRNA downstream 98111 26616410 ~ 26616482 (-) True trnam-cau-3
XM_021589636.2 mRNA upstream 15227 26757098 ~ 26763389 (-) False thpo
XM_021589638.2 mRNA upstream 15227 26757098 ~ 26763629 (-) True thpo
XM_036965954.1 mRNA upstream 96071 26837942 ~ 26842853 (-) True LOC110508805
XR_005040293.1 mRNA upstream 171057 26912928 ~ 26920425 (-) False LOC118944878
XM_036967049.1 mRNA upstream 183398 26925269 ~ 26972827 (-) False LOC110508196
TU2426633 other downstream 645384 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 764140 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1439967 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1566073 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 1979606 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1803070 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1803070 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1885184 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1920837 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1950268 28692139 ~ 28692470 (-) True G2125290

Expression Profile