RNA id: XM_021589638.2


Basic Information

Item Value
RNA id XM_021589638.2
length 1565
RNA type mRNA
GC content 0.44
exon number 4
gene id thpo
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26757098 ~ 26763629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATAATAAAACATTAACTCCGGTGGGAGTAGGATAGCCTAGTCAACATATTATCTTCTGAACGTTACATGACTTTTATGTTAATGAGTCATTGTCATAGaacgagagagagcaagcgagcgaAAGAGAGATTTAATTAACGACAGGGGACAGATGAAAGAAGAACAGCAGTTCGGTGATATTCGTTCACGTGACCCTTTGGATTATAGAAAAAGGAAAATTGAGCGCGCTCTGGGATTTGATAACGCGCGCTCTTCGCGCTATGAAGGATGATAACGTGGGAAATTAAAGGGCGCGAGGACTATAGAGGGGACACAACGCACTTCAGATGTGCAGAAAGTAATTCGGAGTGGTTTTATTACCGACTGAAGACAGTAAACATTCCGTTTTTTTAATGGACCACATTAATGGACATCAGACGCAGCCGAGAGGGGCATGGCGTTAAGCAGACTTCTTCTGCTGTGCATGGTAGCCTCTGAGGTGTGGAATGCTGAAACCAGGCCCATAGActttgtgtgtgacagagagtcCAGGAGGGACATGAACACTGTGGCAGAGATGGCGGCTGCTCTGGCCCAGGAGAAGAAGGGGGACATAGCTGCAACTCTGAGGGCTTTGTCTAGGAGTGTGAGTGTGGTTAAGACTCTGAGCCAGCCTGGCTGTGCCGCAACTCTGCTGgagagactggagcacactgtcAACAACTACCTACACATAATCACACACCTGGACATCAGGGGGTCTGTGGAGAGCCCGTTGTTTTCAAGTACCGCTGAGAGTACCCACAGCCTGAGCACGGTTCTGTGGACTTTCAGCAGACTGATCACTGGAAAGATGGAATGGCTTATGGCTGACCTGACCCATGGGTGCccctgaagaagaaggaggggagggagctACTTCAGAGTATTGAGACGCACCCAGATAAGTGAGGAGGCTAGGGGGCTGCTGTAGAGTATTGTGATGCACCCAGAGAGGAGAGGCGATGTGGAGAAGGGAGGTGCTCAGAGAGGAGAAATGACATAACCGCCTGAAAGCTGTCACTCACCGAGCAGACCTTTCTCTGGTTGgttacacattacagacagtaAAGACTTGTAATGAAACATGGAGATACGTCACCTTCTGCTGGTCATTATTTGGAATGACAGCTCACTGTTTCCGGCATTCAGCTTAGACTGACTGCATGCTGTTTCTGCAGTAAAACCAGGACAAAAGGAATAAAAATGTACATGCTACATATGAGAGACAATTGACCCAATTGATGGCTTGCATTTCATGGCACCTACCAACAGAGCACTAGGAACACATGTCAAGCATTTGGATGCAATCAGATAATGGTCCACTcttagtattttttatttattgttcACTGTACATTAGTTTTATAACTGTGTTTTTTTATTAATTCATTAATCAGGCTATATAAATATTTGTTTATATTTGTATGTCATTATTAAAATTAAATCCTCAAAGGAAATTTTAACTACACAAAAAAACCTGTCCTCATAAAATGTCAAATTATACACCATGTTTTAATTAAACTTTTCTGAAAGTAATACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427334 lncRNA downstream 15290 26736395 ~ 26741808 (-) False LOC110508801
TU2427333 lncRNA downstream 15290 26736439 ~ 26741808 (-) True LOC110508801
TU2427366 lncRNA downstream 34905 26720278 ~ 26722193 (-) True G2123004
TU2427335 lncRNA downstream 44169 26712155 ~ 26712929 (-) True G2122977
TU2427347 lncRNA downstream 63847 26693001 ~ 26693251 (-) True G2122989
TU2427639 lncRNA upstream 42562 26806191 ~ 26831467 (-) True G2123218
TU2427696 lncRNA upstream 144324 26907953 ~ 26911066 (-) True G2123273
TU2427698 lncRNA upstream 148130 26911759 ~ 26912063 (-) True G2123275
TU2427703 lncRNA upstream 153380 26917009 ~ 26917214 (-) True LOC118944878
TU2427705 lncRNA upstream 157777 26921406 ~ 26921695 (-) True G2123281
XR_002471365.2 mRNA downstream 15227 26714593 ~ 26741871 (-) False LOC110508801
XM_036966320.1 mRNA downstream 15227 26717511 ~ 26741871 (-) False LOC110508801
XR_002471366.2 mRNA downstream 15229 26714593 ~ 26741869 (-) False LOC110508801
XM_021589635.2 mRNA downstream 15230 26715792 ~ 26741868 (-) False LOC110508801
XM_021589633.2 mRNA downstream 15233 26714593 ~ 26741865 (-) False LOC110508801
XM_036965954.1 mRNA upstream 74313 26837942 ~ 26842853 (-) True LOC110508805
XR_005040293.1 mRNA upstream 149299 26912928 ~ 26920425 (-) False LOC118944878
XM_036967049.1 mRNA upstream 161640 26925269 ~ 26972827 (-) False LOC110508196
XM_036967050.1 mRNA upstream 161640 26925269 ~ 26972827 (-) False LOC110508196
XM_036967051.1 mRNA upstream 161640 26925269 ~ 26972827 (-) False LOC110508196
TU2426633 other downstream 687889 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 806645 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1482472 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1608578 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2022111 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1781312 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1781312 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1863426 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1899079 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1928510 28692139 ~ 28692470 (-) True G2125290

Expression Profile