RNA id: XR_005040293.1


Basic Information

Item Value
RNA id XR_005040293.1
length 4689
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118944878
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26912928 ~ 26920425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctgtgctcatttgaacaggaaggtggcgctctagaaagaggcccaaaatcccaacttggaattccgagttggatgaccgttaaaTTATTTTCCAAATCGGAGCCAATGTTATCCGAGTTCCCAATTGTCTTGAATTCACTGAAGCCTTCGatttctgagtttccagttgttttgaacaaggcagaagtcatgctggattgacagcatggccaatgtattcaaactTTTCTAGCCCATGGTATTACgccctttttcgtgatatccaattggtagttacaatcttgtctcatcgctgcaattcTCCTACAAGGGTTGAAAAGGATTTTCCAGTAGATTGCTGACTTGATGAcggcttgtctagcttgctagctaagatttttaaAGTATGATAACATGATCAGGCCAATCAAAGCTAAGGTAGAtggatataacgtgatttgatgtcattttatctgtggccaatgaccttgagctgCCTTGGAtgcatgagtgacagaacactgagccaatcacggtgcaactagagaacattactaACCCCATCACATTATGATGGCTGTTGTCGGTCTCAGCCATGTCACATCACCGGTGAGCAGACGAGTATCTGACATGGCCTTACAGTAAAATACTCCTATCCAAGAGACTGCATGCTTGCTTAGCCTATATCCCTTTCTCTGGCAGATAAAACAGCCCCCGCAATCTCAAAGAGAAAAGCCCCACTGGTTAGCAGACACCCCCACAGGGCGGTGGGGTCCACGATCTCTGGTGGCCCATGCGCCTGTCATTgtctatttttgttgttgttgaataagTCATTTTGACAGCAAACCTCCAAGTCATTCATAACCCTTTTTAATTTCCGTAAGTACTATGAAACAAAGTTTTTGTTTCTTGTGATTCAGGAATGTGACTGAAAAAGAGAGAAGATACTGATGGAAAGTATAAGGGAATATCAGTGAAGAAATGCCGTGGTCAAGGCTACGACGGCACCAGTGCAATGAGTGGAGCTTTACTCAGGTGTTCAAAAGCCATTTCAGAACGAGAGCCTCATGCTTCATATAGTTCTTTATGAGTTTAAGTTTAGAAAACAATCTCTCTGCAGAAGCGATACTTACAGAGGTAAAAGCATCTTAATTACCGTAGCAACGTCAAGGGAACTAGTCAGAAGGGAGGAGGGCTTCAAATACAGCAGTTCTGCAACATCTTTAATTGAGCTTCTTATTGTCTTTTATGTTACGGAAAGAGATGAACTGCACAGGAAGCTCTGGGGAAAGGTCGTCTAGATACTGGACAGACAATAAAATTGGCAGACGCAAACAGATTAGCATCTTTAGCAGACAACAGTTCTTGAGGGCTTGAAAAAATAAAGCTGTTTGCAATTTCGTTCAATCTGGTGAACAGGCGTTTGCGTTGTGTGGTTGCAATATCAACAGTCCCTTATCTTTGGTATATCTTGGCATGAATCAATCAAGACTTCATTTAAATAGTGTGCAGCGCAATAGACCTAATTCACAATGTCTCAGGAAAGTCTGGGCTGTCAATACTCAGTATAGAAAACAGTCGAGGTGTAACCTGGACCTACAGGCCGTGGTGaaaacatttgcacacaaaaaaggAGGACTTCAGCACCCAGGGGAGTCTCAAGTTGGATTTAATTGAATTTACCTCAATATTGCAGCCCATTTGTGTAGGCTGTTAGCCAGAAAAAACCCGCTGAGTTCAACAATAAATTACTGAATTTAGTGTTTGAATTTATCCTCAAGGCCTTTTCCCTCATTGTTAGGCTATTTTTGTTTATAAATAGAagctaaatactgtatatagctATAGACAGTATACTGCATAATGAAACAATCCCTAGTGTTTTGAGGGTGGACTGGCTATATTATTTGGTTTTGCGCACAACTTTCTATCCAAGCTGGGAGAGAGCGCAAAGACGAGTCGtgattacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgatttgatgtaggtTCAGATAACCTATATAGAGTAGTTGTAGGCCtgtattcaacaacaacaaatgcaGATTAGTATGCTGTTGTATTGGGAAAAAGTACTTGACAATCTGCAATGTTGAATTTCCAACTGTAATTACTGAACAAGTAATTAAATTATTACCGCCAGCCAGCAGTCAAAAAATAGCAGCATTGCTACACCGTGtatagcttcatgaaatgtgagaAAATGATGACCAAATAGGCCTACCAATAAACAAGCCTTTCATCAATTCGATAGACATGCAGCTGTATGTGTTGCAATTTCATCGAATTTCTATACTTGTATTAAATTGTGTTTTTAGGAAGGGGATGGGAAAACACCTTGTCATTCTCTGCAAACGTCAAAGCAGGGACTCGCTCCTGTAGGCTCGTACAACATCCTTAAGAGTACCACCCTACATCACACAGGAAGCGGCTCGGGTCCTAATCCAGGCCCTTGTCATCTCCTGTCTGGACTACTgggtaagggagggagagagtcgaCGGCGAGAGGAGGGTAAGGGAGGGGGACGATGACGAGAGGAGGGGACAGCAGGGTAAGGGGGGCGACTAGAGGAGAAAATATGGCCGTATTTAACTTTTTGTTTTTTGAACATGATTTCTAGCTGAGATAAGTTCCTTATGCTTCCAGAACTGTACCACTTACAATGCctgttaatgttcagaccgagCGTTGCTGCTCTTAATAAAGCTCCCCCCAACAGAAGATGCCTTCGTCCAATGGCTCTTATGTGTAATGGCATGGCTCTTATGTGTAATGGCTCTGGCTCTTATGTGTAATGGCTCTGGCTCTTTTGTGTAATGGCTCTGGCTCTTATGTGTAATGGCTCTGGCTCTTATGTGTAATGGCATGGCTCTTATGTGTAATGGCTCTGGCTCTTATGTGTAATGGCTCTGGCTCTTATGTGTAATGGCTCTGGCTCTTATGTGTAATGGCTCTGGCTCTTATGTGTAATGGCATGGCTCTTATGTGTAATGGCATGGCTCTTATGTGTAATGGCTCTGGCTCTTATGCGTAATGGAATTGCATGGCTTTTATGTGTAATGGCATGGTTTTTATGTGAAATGGAATTGCATGGctcttatgtgtaatggaactgagagtcattaTCAAGGGCTAGATCTGCACCATCACATGCTCTGGGGAGCTGTCAAGTGTCCAGGTGCTGAAACACACGCAGGATTGTCTGTTTTTTCTCTCGCTATTCACACATCGATTTCATGATCTTTATCTGGGCTGTGAGCAACATTTGAGGCGTATAGCAGACCACACGAATATTGAAAACACTCAAGCGCTGTAGTGTTAGTGACATACTGAGCATGACTGCTTTTTTTCCAGGTTAAATTTTGAGGATTGTGAAATGATCTCAAAGTCAAGAAAGGCAGTCAGCATCCAAGAGATTGCTGCTCTGTCCAGATCCTCCTTAAATGGTAAGGGTCAGAAAGACGCACACGGACCATCTCTCTAACCAAGGCCTCCTACTTTTCTTTCTCCAGGCATTTCCCAGGCGATGAAGGACCATGTGACCAAGCCAACATCCCTGCAGGGTCATCCACCTCAAGTGGAAGGGTTGGCCCAAACCCACCGACCCCCTCCGCACACTCTGCAACTCTCTACAGGAAGCTCGCTTCGCCGCAGGAGTGGCAGAGCAGTTTGCTATCGCTGAGGCAAAGCTGAAAACCTGGACCTCTGTGGCTGATGACCAGAAAGACGATGACTAGGAGTTCCTCCAGAACAATAGAAACACACTCTCTACCCACAGCTCAGGTGTTCTGACACTTTGATTCTCCCTCAGACTTCAACGTCCAAGCACGAGCCCCGAGTGCCATTCCAGGCCAAGACAGACAGCTTTGAAGTTCTAGCAGAAACAGCCTGCACTGTGATAGGCCCACATCTCAGAACAACCCGCCTACTCCAGGGAGTGACTGGGCTAGCCCATTCCCTAGTGGATGGTGAGGATCAGCCTGCACTGTGATAGGCCCACATCTCAGAACAACCCGCCTACTCGAGGGGGTGACCGGGCTAGCCCATTCCCTAGTGGATGGTGAGGATCAGCCTGCAGTGTGATAGGCCCACTTCTCAGAACAACCCGCCTACTCCAGGGGGTGACCGGGCTAGCCCATTCCCTAGTGGATGGTGAGGATCAGCCTGCAGTGTGATAGGCCCACATCTCAGAACAACCCGCCTCCCGCCTACTCCAGGGGGTGACCGGGCTAGCCCATTCCCTAGTGGATGGTGAGGATCAGCCTGCACTGCTGCAAGTCTGTATCGTCTACCAGTCTGACTGGAGGCCGGAGGTTTGACTCCTGCTATTCAACCTCTCACTCTGAGTCTCTTGGAGAGGATAGGAGTGTGTTTCAGGAGGGTAAAGAGTGGCTCTCCGACAGAGGCTCGTCAGGCGTGGCTTCGTTCCATTAAGAAGATAAGGTGGAAAGCATTTAAATGTGATGTTTCATCTTGTAGGTGTACACCTCTATGGATAGTCTGTCAACTCTTAGAAACACTTCCTTCAGAagttattcacaccccttgacttattctagattgtgttgttacagcctgaatttaaaattgattaaatagagattttgtgtcactggcctacacacattaccccataatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427698 lncRNA downstream 865 26911759 ~ 26912063 (-) True G2123275
TU2427696 lncRNA downstream 1862 26907953 ~ 26911066 (-) True G2123273
TU2427639 lncRNA downstream 81461 26806191 ~ 26831467 (-) True G2123218
TU2427334 lncRNA downstream 171120 26736395 ~ 26741808 (-) False LOC110508801
TU2427333 lncRNA downstream 171120 26736439 ~ 26741808 (-) True LOC110508801
TU2427705 lncRNA upstream 981 26921406 ~ 26921695 (-) True G2123281
TU2427714 lncRNA upstream 16020 26936445 ~ 26937469 (-) True G2123290
TU2427739 lncRNA upstream 103465 27023890 ~ 27075887 (-) False G2123309
TU2427736 lncRNA upstream 152484 27072909 ~ 27075887 (-) False G2123309
TU2427737 lncRNA upstream 152484 27072909 ~ 27075887 (-) True G2123309
XM_036965954.1 mRNA downstream 70075 26837942 ~ 26842853 (-) True LOC110508805
XM_021589638.2 mRNA downstream 149299 26757098 ~ 26763629 (-) True thpo
XM_021589636.2 mRNA downstream 149539 26757098 ~ 26763389 (-) False thpo
XR_002471365.2 mRNA downstream 171057 26714593 ~ 26741871 (-) False LOC110508801
XM_036967049.1 mRNA upstream 4844 26925269 ~ 26972827 (-) False LOC110508196
XM_036967050.1 mRNA upstream 4844 26925269 ~ 26972827 (-) False LOC110508196
XM_036967051.1 mRNA upstream 4844 26925269 ~ 26972827 (-) False LOC110508196
XM_036967052.1 mRNA upstream 4844 26925269 ~ 26972827 (-) False LOC110508196
XM_036967054.1 mRNA upstream 4844 26925269 ~ 26972827 (-) False LOC110508196
TU2426633 other downstream 843719 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 962475 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1638302 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1764408 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2177941 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1624516 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1624516 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1706630 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1742283 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1771714 28692139 ~ 28692470 (-) True G2125290

Expression Profile