RNA id: XM_036967061.1


Basic Information

Item Value
RNA id XM_036967061.1
length 7151
RNA type mRNA
GC content 0.55
exon number 32
gene id LOC110508196
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26925269 ~ 26973311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCCATGCGTACCCGGGCACAGTCCTGCCGGCTCCAGCGGACGATAATGCATTGCACCATGGCCTCGCTGTAAACCGAATGAAACCCCCAGTATATTGTATTTTACCGGCAATCCGTTACCATCGGCGCCTTGATCATGGATCTCCGGTCCAGAGGCTTTTTTAGGAGGCATTGGAGTTGTCAATAGTAACCTTCAAGTGCGATATTAATACAGTTTCTGCCCTGTCACTTTTGCACGTTCTGGGAATTTAAAGACGAAGTGACAGCACTCACCTAGCTAGCTGCTAAGTCAATAAAGGCACACTTTCCATGTGGAGGAGAGGACAAGAAACTACATTAGCTACAATTTTAAGTAATGGACAATAGGTTATAAAATACTGTCTTTTTTCCATTGTTTATTCAAGTCTTCCCTCCGATCCCTCAGACACTTCATACCCGatCGGCTGGCAAGTCAGCGCCACCCTGATGCAGAACTACGTGAAATGAACAAACCACCGCAGCCTATAACGGGACCCACCTCTGTcccactcccctccccctcccctggcCTGACACAGGCTACCTATGCCTCTGGACAGCCCACTTCACTTGTCTTCGCCACCCAAACTCCCCAACAAATGAATTCTGCACCGCAGCCACGACAGTTTGCCACCGGGCCCCGTGCTTTACACCAACAGCCTTATTATGCCAACAGGCCCACCAGTGTCACCCGGGTCCAGACCAGCAGTGGGCCTCGTCCGGTTGGTCCCACCCACATCTACCAGCCTGGCTCCCAGATGATGATGATCCCTGGTCAGCAGCTGTCCTTTGCTGGCTCCCCTCAGGGCTACTTCATCCCCCCTGGACAGtatCGGGCTCCCTACATGCCACCAAGTCCACAGTACCCTGTGACAAGTGGGACAGCAGGCTTCTACCCAGGCACCAGCCCGGCTGAATACCCCACCTATGAACCCTCTCTGGctgcgagggagaggagagggggcggGCGAGAGAATGGGCGTCTCTCTCTCCACGGTGCTCCTCTCACCTCCCAGCGCTACCCCGcAGGTGCCTACTACCCGGCCCAGCCCCAGTACAGCCACACACCCCCTGTCCAGACCGCGACTGTCATAAGCCCTGCCCAGCCCCAGCAGCAGGCCTTGCCCCCTCAGCCGCCAACCCATCCACCAGCACCCAAGAGGGAGCGCGTAAcgATCAGAATACGAGACCCCAACCAAGGGGGCCGTGATATCACAGAGGAGATCATGTCCGGGGGAaggtccacctccaccccccctTCACAGTCCTCCACCACAGAGGAAGAAGGTCCTGCCCAGACCAACGGGGAATTTACTAAACCCGTCACCATCGTGACGAGAACAGATGAAAACGCAGAACCCGCGGATTGCACAGTGACGGCCGCCGAAACCCTGCCTCCAGTGTTGTCAACTCCAGAGCCTACCACTGCAGCTGTCCCACTGGAGGCCAGACAGGAAACCGATGGCCAGGTTGCCCCGCTTACCGAACAGGTCGTCAGCGAATCACATGCCCCGGTGGCGGGGATGAGGCCCGAGGTGCCCATCCCACAAAGGGAAGAGCAGGCCCCTGCCTTCTCCCCCCTGACAGCttctacctcccctccccctgaAGAGGTACAGACTCCACCCCCTGCCACCACCATGGCTCAGGCCAGCCACACAGTGGGCGCTGGTATGACCCCAGCGGTGAAGGCAGTGACCCCGGAAGGTCCTTCCACACAGGTAGAGCCTCTGGCTGCACCAGCATCTGTGGAGAAGCCTCTTGCCCAGGTAGCGgaggaagtagtagtagtagtggtggaggagaAGGTAGAAAAGGTCAAGAAGGAGCCGGCAGTTACCATCAATCCAGAGGTAGTAGTGGCTGTTGTGGTCATTAAAGAAGACACTAAACCCGCTCCACGACCTGTGACCCCCATCGCAACGGGCGACGATTTTGTTCCGTCCTTGAAGTTGGTGGCGGCTGTGGAAGCGGCCACTAAAACTGAGAGCGTGGTGTTGCCGCCAGCGCCCAAACAGAAAGCCATGACCGAGCCCATTTCTGCCCCTGCTCATGCCGCCACTCCCCCTGTCTCGTTGGCGGAGCCTGCTGTGGCCCAAAAGAAGGTGGAGCAGCTTCCCCTGTCCAACGGCCTCCCCCAGGAAGACCCCGATGAGGTAGATGCCCCCGTTGTTGCAATAGAGCGCATTGCAACTGTAATCACAGAGCCTGCTGCTCCCCCACCTCAGGAAACTGCTAACCCTGCGGCTGCTgccgtggaggaggaggagcggaaAGAAGAGGAGCAGAAAGAGGAGGATGCATCCCCAGTGCCCTTGTCCAGCAGCCCTTCAGAGGACTCGTCTATGCAAGCTGCTGTGTCTGTGCCAAAGAAGAAGAGGAACATGAAGGAGCTGAACAAGAAGGAAGCCATCGGAGACATGCTGGATGCCTTCaaagagGAGGAGGTGGCGGCACCTGCCACCGAGCCGTCGTCTTCACCGCCGGAGCCCAGCCCTGTGGCCCCGACCTCCTTGCCGCCCGCCGACGCACCAGACGAGACGTGGGAAGAGAAGGAGGACAAGCAGAACGCCGACACACCCCCGCTCAAACCGGGCGACCTCAAGTATCAGTACAAAGGAGAGCAATGGAAGCCTATCGAcccagaggagaagaagaggtacGACAGGGAGTTCCTGCTGGGTTGCCAGTTCATTAGTGCCAGCATGAACAAGCCTGAGGGCCTGCCTCTTATCACAGACGTTGTGCTAGATAAGGCGAATAAGACCCCCATGCGCCCAGCGGAGCCGGGTCGCAACATGAACGCCGGGCCAGACTTCACCCCCGCCTTCATGGGTAACCTGGGTAGACAGTCCTCTGGGGGAGGGGGACCACGGGCCCCTGGAAGGGACCACATGGGACCCCCAGGACCACGGCGCTCCCAGCAGGGCCAGCGCAAGGAGCCCCGCAAGATCATCACAATCTCCTCATCGCTAGGTGGCGAAGTGGAGCTCAACAAGGCGGAGAAGGCCTGGAAGCCCACAGTGAAGAAGGCTGTGACCCGGGGCCGAGGCGCCGCCCCCGAGGATGAGGAGAGCGACGACCCCGAGCAGGCCAAGACCCAGGAGCTGTTCAAGAGGGTCCGCTCCATCCTCAACAAGCTGACCCCTCAGATGTTCCAGCAACTGATGAAACAGGTCACAGAGCTGACCATCGACACGGAGGAGCGGCTGAAGGGAGTGATCGACCTGATCTTTGAGAAGGCCATCTCCGAGCCCAACTTCTCTGTGGCCTACGCAAACATGTGCCGCTGCCTTATGGGGTTGAAAGTGCCCACCACAGACAAGCCGGGAGTGACTGTAAACTTCCGCAAGCTGCTGCTCAACCGCTGTCAGAAAGAGTTTGAGAAGGACCAGGATGATGACGTCATCTTTGAGGCCAAACAGAAGGAGATGGAGGCTGCCAAAGAGGAGGAGAAAGCTGGTCTGAAGGCGACGCTGGAGGAGGCCAAAGACCAGGCGCGGCGGCGGTCGCTGGGCAACATCAAGTTCATCGGTGAGCTGTTCAAGCTGAAGATGCTGACGGAGGCCATCATGCACGACTGCATCGTCAAGCTGCTGAAGAACCACGACGAGGAGTCGCTGGAGTGCCTCTGTAGACTGCTGTCCACCATCGGCAAGGACCTGGACTTTGAGAAAGCCAAGCCCCGTATGGACCAGTACTTTGCCCAGATGGACAAGATCATCAAGGAGAAGAAGACCTCATCTAGGATCCGCTTCATGCTGCAGGACGTCATCGATCTCAGACGGaGTGGCTGGGTGCCCCGGCGGGGGGAGCAGGGTCCTAAGACCATTGACCAGATCCACAAGGATGCTGAGCAGGAGGAACACATGCAGCAGGTCAAGGTTCAGCAGCAGCTCATGTCAAGGAATGacggaggaggacgaggaggtggtggagggggaagagacgggagggggggagacagaggaggaagggATCAGGTGGGCCGTGGGGGCCAGCAGGTGGGAAGgggcagccagccccaggacgaGGGCTGGAACACAGTGCCCATCTCCACCAAGAACAGACCCATCGATACCAGCCGGCTCAGCAAGATCACTAAGCCTGGTGCTCTGGACTTCAGCAACCAGCTTCTTGCTCCCCAGCTCGGGGGTAAGGGCATGTGGGGCAGCTGGGGCAAGGGCAGCAGTGGAGGCACCACAGGAGCCAAGCCTGCCACCGGAGCTGAACCAGcgGAGACTGGCCGTCCGGCCACCGGCAACCGTTTCTCTGCCCTGCAGCAGTCAGCTCCACCAGCATCCTCCTCAGACGCTGACCGCAGGGTACCCCAGAGGTCCAGCTCCAGCCGTGACCGGGACAGGTTTGACCGCTTCGAGCGGCACGACAGCAGTCGTGACGAGCGTTGTGGCAGTCGCGACACCCGCCCCCCTATCACTAAGCGCAGCTTCAGCCGTGAGACAGAGGAGCGTAGGGGCGATAGTTGCACCCCTACGGAACCCCCTGTCCGGCGCGTAGCCAGCATGACTGACGACAGAGACCGGGGAGGCAGCCGTAGCCGGGGAGGCAGCGGTAGCCGGGACAGGGCTCCCAGCAAGGAGGTTGTTGTGAAGCGTGAGAcagcccccacccctccccccgaTGCTCCGACCAAACCGGCCATGACCGAGGAGGAGCTGGAGAAGAAGTCCAGTGCCATCATCGAGGAGTACCTCCATCTCAATGACatgaagGAGGCACTGCAGTGTGTAGTGGAGCTGAACAGCGCCCCGCTGCTCTTTGTGTTTGTGCGGAACGGTCTGGAGAACACTCTGGAGCGCAGCGCCATCGCCAGAGAACGCATGGGCCTGCTGCTGCACCAGCTCATCAAGGCTGGCACCCTGCCTACAACAGAGTACTACAAAGGGCTCCAAGAGATCCTGGAGGTGGCTGAGGACATGGCCATAGACATCCCCCACATCTGGCAATACCTGTCTGAGCTCATCAACCCCATGCTCCACGAGGGAGGCATCCCCATGGGACAGCTCTTCAGAGAGGTCTCCAAGCCCCTGATTCCCCTGCGTAAGGCCGGTGTGCTGCTGGTGCACATCCTCAACTTACTCTGTAAAGAAATGACCCATAAGAAGGTGGGCGGTATGTGGATGGAGGCGGGGCTCAACTGGAGAGACTTCCTGCCAGAGGACGAGGATGTCAACAAGTTTGTGACTGAACAGAAAATTGAGTTTACCCTGGGGGAGAAGTCAGACGGGACCAATCAGAAGACAACCATGAGTGGGGAGGAGCTTAGCAAACAGCTTGACAGGCTGATCCAGGACAAGGCTAACAACCAGCGCATCAGAGACTGGGTCCAGGCCAACCTGGACGAACAGCAGACGTCCGCCAACCAGTTTGTGCGCTCTCTGATGACATCCATTTGCCAGTCAGCAGTTATATGTGAGAACCCATACAAGGTGGACGTGGAGCAGATTACCCAGAGGGCAAAGCTGCTGCAGCGGTACCTGAGTGACGAGAAGAAGGAACTGCAGGCCCTCTATGCCCTCCAGGCCCTCATGGTGCACATGGAGCAACCGGCCAATCTGCTGCGGATGTTCTTTGACACGCTTTACGATGAGGACGTGATCAAAGAGGAGGCCTTTTACAGGTGGGAGTCCAGCAAAGACCCAGCCGAGCAGACTGGAAAGGGTGTGGCCCTCAAGTCGGTCACCGCCTTCTTCACCTGGCTCCGTGATGCCGAAGAAGAGTCCGACAAAGACTAAACGGGCCTCACTCTAAAACAACCCCTCTATGGCCAGGGAGGGGTATTGCAAGGGGGGGCCAAGGAGGGATTTGGACTCTGGCTCTTTAATGTTGCGGACTGATACCAATCCTCAACGAGGCTATTGAGAGTGGGACATAcaatcactttctctctctttctctcactctcacttcgtcattctctctcctttcccagtTTTGTGATGGCGAGTGTCCGCCGAAAATGAAATAAACCTGAAAAATTATTCTGCCGGATTTTGCTTGTGTAAACGCGTGGGATAACTACTACGGTCATTGCGTATAAAACCCTTTTAACTTTATGTTCTTGAAAAACTTAAGCCACCACGCTGCTCTCTTTATGGTTCTAGACACAATTCTATTATGCAACATACTATATGACACGCAAAACGCATAGAGACAATGGTAGAGGTGTCATGTAGCATGCTTTTCCCCAGGAGTGGGGTATCATGCTGCGCCCGTGTGATGTCCGATCCAACACTATCTTGTTTATGGAGCGTGCAGCATGGTTTAAGTGTTTCTATTGGTGATTAATGTGGAAAGGAGAAGCAGCAGACATGGTATGTTGGCTGATCAGCTGACATCAAATTTATGTGGCTGACTGTATGGAGCCGCTGATTGGAGTTCTGAGAGAAGTTTGTCTGTACCTTTTTCCCCACTTCCAGTTTACCGCTGTACTAGGACCTGTGTGAGGACAGAAACACAATGGAGGACTGATTGTGACCTATGACCATTAGCCTCTGACCATGGCtactgaggggagggagagggggggagggtcTTCTGTATGCTTCCTTAAACCCATCCTTTCACTTCCACCCCCAGTAGTCAATCCTGACTGAGATTCTTCATCTTTTACCTTTCTTGTACTTACATGATGAACTGTTGGGTGCTTTCTCTCTCGAGACCCCTGTCATATCGGTAAAGAAACACCTAACTAGAGGAAACTTAATGACAAGGTCACCATTTAAAACTTGAAACCTACAGAAATCAACTTGATGAAAAACAGAATTGATCCGAAAGCCTTTTCTACTCTGAGTAGAATCACATTTCAGGAGCgttctgtacatatatatatattacactttttttctgttttatttttcagaaataatacaaataaattgcTGATGTACTGTAAACTTTAAAATGCCATGTATCTTTTTCCAACAGAAATGGCAGGTTGACGAGATGCAGAAAGCTTTAGGTTCCATTTAGGTTCCATTCATTAGTTTTATTGgaattttgtaaatattttttccccTATTTTATTATTTAAGGAATAACTGCTTCTTTTTGCATCGGAAACTGGAAAAGATGAGGAAACAGAGCATTGCAAATAAAATACCTGAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427705 lncRNA downstream 3574 26921406 ~ 26921695 (-) True G2123281
TU2427703 lncRNA downstream 8055 26917009 ~ 26917214 (-) True LOC118944878
TU2427698 lncRNA downstream 13206 26911759 ~ 26912063 (-) True G2123275
TU2427696 lncRNA downstream 14203 26907953 ~ 26911066 (-) True G2123273
TU2427639 lncRNA downstream 93802 26806191 ~ 26831467 (-) True G2123218
TU2427739 lncRNA upstream 50579 27023890 ~ 27075887 (-) False G2123309
TU2427736 lncRNA upstream 99598 27072909 ~ 27075887 (-) False G2123309
TU2427737 lncRNA upstream 99598 27072909 ~ 27075887 (-) True G2123309
TU2427764 lncRNA upstream 119542 27092853 ~ 27093157 (-) True G2123334
TU2427782 lncRNA upstream 166631 27139942 ~ 27140186 (-) True G2123349
XR_005040293.1 mRNA downstream 4844 26912928 ~ 26920425 (-) False LOC118944878
XM_036965954.1 mRNA downstream 82416 26837942 ~ 26842853 (-) True LOC110508805
XM_021589638.2 mRNA downstream 161640 26757098 ~ 26763629 (-) True thpo
XM_021589636.2 mRNA downstream 161880 26757098 ~ 26763389 (-) False thpo
XM_036966320.1 mRNA downstream 183398 26717511 ~ 26741871 (-) False LOC110508801
XM_036965875.1 mRNA upstream 1127 26974438 ~ 26998393 (-) False tfa
XM_036965876.1 mRNA upstream 1127 26974438 ~ 26998393 (-) False tfa
NM_001124552.1 mRNA upstream 17953 26991264 ~ 26998307 (-) False tfa
XM_021588578.2 mRNA upstream 17955 26991266 ~ 26998392 (-) True tfa
XM_021589642.2 mRNA upstream 60385 27033696 ~ 27046353 (-) False LOC110508807
TU2426633 other downstream 856060 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 974816 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1650643 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1776749 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2190282 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1571630 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1571630 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1653744 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1689397 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1718828 28692139 ~ 28692470 (-) True G2125290

Expression Profile