RNA id: XM_036965876.1


Basic Information

Item Value
RNA id XM_036965876.1
length 2233
RNA type mRNA
GC content 0.54
exon number 17
gene id tfa
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26974438 ~ 26998393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAGTCAGCCCACCGTGGATCCCAGCCTATTGGTCTTCTATAAAAGCCAGAGTTGCCTTCTAAAACGGCCTGCTTTTTCACTCCGGGAATTGTTGACTTGGAGACTTCGAGAACATGAAACTGCTTCTCGTCTCAGCGCTGCTGGGGTGCCTCGCTACGGTGTATGCTGCCCCAGCTGAGGGAATGGTTAGATGGTGCGTAAAGTCGGACAAAGAGCTGCAGAAATGCCACGACCTCGCAGCCAATGTGGCGCAGTTTTCATGCGTGAGGAGGGACAACTCTTTGGAATGCATCCAAGCCATCAAGaGGGAAGAGGCTGATGCTATCACTCTGGATGGAGGAGATATTTACATAGCTGGCCTCCACAACTACAACCTGCAGCCCATCATTGCAGAGGACTATGGTGAGGACTCTGACACCTGCTATTATGCTGTGGCCGTGGCCAAAAAGGGCACTGACTTTGGGTTCCTCAACCTCCGTGGCAAGAAGTCCTGCCACACCGGGTTGGGCAAATCTGCAGGCTGGAACATTCCCATCGGTACCCTGGTGACTGTGGGCCAGATCCAATGGGCCGGCATCGAGGACAGACCTGTGGAGTCGGCGGTGAGCGACTTCTTCAATGCCAGCTGTGCTCCAGGAGCCAATAAGGATTCTAAACTGTGCCAGTTGTGTAAGGTAGACTGCTCCAGATCTCACAATGAGCCCTACTATGACTATGCCGGGGCCTTCCAGTGCCTGAAGGATGGAGCAGGAGAGGTTGCCTTCATCAAGCACCTGACTGTACCTGCCGCAGAGAAGGCAAGCTATGAGTTGCTGTGCAAGGATAACACCAGAGCTCCCATCGACAGCTACAAGACCTGCCACCTGTCCAGAGTACCCGCCCACGCTGTGGTCAGCCGCAAGAACCCCGAGCTGGCCAATCGCATCTACAGCAAGCTGATGGCCGTCGAGAACTTCAACCTGTTCTCCTCCGATGGTTATGCTGCCAAGAACCTGATGTTCAAGGACTCCACTCAGAATCTAGTACAGCTGCCAATGACCACCGACTCCTTCCTCTACCTGGGAGCTGAGTACATGAGCACTATACGCTCCCTGACAAAAGCGCAGGCCACAGGTGCCACCTCCAGGGCCATCAAATGGTGTGCCGTGGGCCATAACGAGAAAGTCAAGTGTGACGCCTGGACAATCAACAGCTTCACAGATGGTGACTCCAGGATCGAATGCCAGGACGCACCCACAGTGGATGAATGCATCAAGAAGATCATGCGTAAAGAGGCAGATGCCATAGCGGTGGATGGTGGGGAGGTGTTCACTGCTGGAAAATGTGGTCTGGTCcctgtcatggtggagcagtatGATGcagttCAGTGCAGCGCCCCTGGTGAGGCGTCATCCTACTTTGCGGTGGCGGTGGCAAAGAAGGGATCTGGGGTGACCTGGAATACCCTGCAGGGCAAGAGGTCATGCCACACCGGCTTGGGCAGGACCGCAGGCTGGAACATACCCATGGGTCTTATCCATAAGGAGACTAACAACTGCGACTTCACCACATACTTCAGTAAGGGCTGTGCTCCTGGATTTGAGGTGGATTCTCCTTTCTGTGCCCAGTGTAAGGGCGGTGGGCAGTCCGTGGGAGGAGATAGGGCCAGGTGCATGGCCAGCTCTGAAGAGCAGTACTACGGCTATACCGGAGCATTCAGATGTCTGGTTGAAGGTGCTGGAGATGTTGCCTTCATTAAACACACTATTGTACCAGAGAACACTGATGGTAGTGGTCCAGTTTGGGCACAGGACCTGAAGTCCTCTGACTTTGAACTACTCTGCCAGGATGGTACTACCCAGCCAGTCACAAAGTTCCGTGACTGCCACCTGGCCAAGGTGCCCGCCCATGCTGTGATAACACGCCCAGAGTCCCGTGGAGAGGTTGTGTCCATCCTTCTGGAGCAGCAGGCCAGGTTCGGCTCAAGCGGCAGCGATTCCTCATTTAATATGTTCCAGTCAGATTTGGGAAAGAACTCGCTCTTCAAGGATTCCACAAAGTGTCTCCAGGAGATCCCAAGCGGCACCAAATTCCAGGATTTCCTTGGGGAAGAGTACATGATCGCCATGCAATCGCTCAGGGAGTGCTCCAACAGTACCTCAGGTAGAGTCCCATTACGTGACAACcttacacacacatgtgcacacacactgtataaagGACATATCTGCATCTGAAGCTAAAACCTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427714 lncRNA downstream 36969 26936445 ~ 26937469 (-) True G2123290
TU2427705 lncRNA downstream 52743 26921406 ~ 26921695 (-) True G2123281
TU2427703 lncRNA downstream 57224 26917009 ~ 26917214 (-) True LOC118944878
TU2427698 lncRNA downstream 62375 26911759 ~ 26912063 (-) True G2123275
TU2427696 lncRNA downstream 63372 26907953 ~ 26911066 (-) True G2123273
TU2427739 lncRNA upstream 25497 27023890 ~ 27075887 (-) False G2123309
TU2427736 lncRNA upstream 74516 27072909 ~ 27075887 (-) False G2123309
TU2427737 lncRNA upstream 74516 27072909 ~ 27075887 (-) True G2123309
TU2427764 lncRNA upstream 94460 27092853 ~ 27093157 (-) True G2123334
TU2427782 lncRNA upstream 141549 27139942 ~ 27140186 (-) True G2123349
XM_036967057.1 mRNA downstream 1127 26925269 ~ 26973311 (-) False LOC110508196
XM_021589642.2 mRNA upstream 35303 27033696 ~ 27046353 (-) False LOC110508807
XM_021589641.2 mRNA upstream 35303 27033696 ~ 27046481 (-) True LOC110508807
XM_021589644.2 mRNA upstream 52865 27051258 ~ 27055811 (-) False ppp1r7
XM_021589643.2 mRNA upstream 52865 27051258 ~ 27055816 (-) True ppp1r7
XM_036966420.1 mRNA upstream 143151 27141544 ~ 27243306 (-) False tox
TU2426633 other downstream 905229 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1023985 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1699812 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1825918 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2239451 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1546548 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1546548 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1628662 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1664315 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1693746 28692139 ~ 28692470 (-) True G2125290

Expression Profile