Item | Value |
---|---|
RNA id | TCONS_00055430 |
length | 795 |
lncRNA type | retained_intron |
GC content | 0.49 |
exon number | 4 |
gene id | XLOC_028573 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_007115.7 |
NCBI id | CM002888.2 |
chromosome length | 78093715 |
location | 11573568 ~ 11603149 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0060070 | canonical Wnt signaling pathway | biological_process |
GO:0035556 | intracellular signal transduction | biological_process |
GO:0035025 | positive regulation of Rho protein signal transduction | biological_process |
GO:0009950 | dorsal/ventral axis specification | biological_process |
GO:1900107 | regulation of nodal signaling pathway | biological_process |
GO:0048382 | mesendoderm development | biological_process |
GO:0005085 | guanyl-nucleotide exchange factor activity | molecular_function |
GO:0005515 | protein binding | molecular_function |
GO:0030295 | protein kinase activator activity | molecular_function |
id | description |
---|---|
ko04111 | Cell cycle - yeast |
id | description |
---|---|
ZDB-GENE-041121-18 | Enables transcription coactivator activity. Acts upstream of or within dorsal/ventral axis specification; mesendoderm development; and regulation of nodal signaling pathway. Located in nucleus. Is expressed in axial mesoderm; margin; and shield. Orthologous to human NET1 (neuroepithelial cell transforming 1). |
ensembl_id | ENSDART00000150705 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00055426 | lncRNA | downstream | 172668 | 11402691 ~ 11404177 (-) | True | XLOC_028572 |
TCONS_00055422 | lncRNA | downstream | 328560 | 11245332 ~ 11248285 (-) | True | XLOC_028571 |
TCONS_00055421 | lncRNA | downstream | 389909 | 11179509 ~ 11186936 (-) | True | XLOC_028570 |
TCONS_00055416 | lncRNA | downstream | 451195 | 11124613 ~ 11125650 (-) | False | XLOC_028568 |
TCONS_00055415 | lncRNA | downstream | 451679 | 11124613 ~ 11125166 (-) | False | XLOC_028568 |
TCONS_00055434 | lncRNA | upstream | 29774 | 11610718 ~ 11637236 (-) | False | XLOC_028576 |
TCONS_00055435 | lncRNA | upstream | 29774 | 11610718 ~ 11637392 (-) | False | XLOC_028576 |
TCONS_00058101 | lncRNA | upstream | 29774 | 11610718 ~ 11690612 (-) | False | XLOC_028576 |
TCONS_00058102 | lncRNA | upstream | 29774 | 11610718 ~ 11691616 (-) | False | XLOC_028576 |
TCONS_00058103 | lncRNA | upstream | 29774 | 11610718 ~ 11692199 (-) | True | XLOC_028576 |
TCONS_00055424 | mRNA | downstream | 171878 | 11401121 ~ 11404967 (-) | False | XLOC_028572 |
TCONS_00055423 | mRNA | downstream | 172986 | 11401018 ~ 11403859 (-) | False | XLOC_028572 |
TCONS_00055425 | mRNA | downstream | 173034 | 11401124 ~ 11403811 (-) | False | XLOC_028572 |
TCONS_00055418 | mRNA | downstream | 410884 | 11144600 ~ 11165961 (-) | False | XLOC_028569 |
TCONS_00055419 | mRNA | downstream | 411234 | 11146618 ~ 11165611 (-) | False | XLOC_028569 |
TCONS_00055436 | mRNA | upstream | 151212 | 11732156 ~ 11751037 (-) | False | XLOC_028577 |
TCONS_00055437 | mRNA | upstream | 153418 | 11734362 ~ 11737939 (-) | True | XLOC_028577 |
TCONS_00055442 | mRNA | upstream | 223731 | 11804675 ~ 11810799 (-) | False | XLOC_028581 |
TCONS_00055443 | mRNA | upstream | 228193 | 11809137 ~ 11810365 (-) | True | XLOC_028581 |
TCONS_00055444 | mRNA | upstream | 232834 | 11813778 ~ 12007404 (-) | True | XLOC_028582 |
TCONS_00055389 | other | downstream | 915168 | 10661561 ~ 10661677 (-) | True | XLOC_028553 |
TCONS_00055328 | other | downstream | 2988937 | 8587787 ~ 8587908 (-) | True | XLOC_028518 |
TCONS_00055327 | other | downstream | 3435379 | 8141349 ~ 8141466 (-) | True | XLOC_028515 |
TCONS_00055313 | other | downstream | 3700915 | 7870895 ~ 7875930 (-) | False | XLOC_028507 |
TCONS_00055311 | other | downstream | 3701085 | 7870736 ~ 7875760 (-) | False | XLOC_028507 |
TCONS_00055432 | other | upstream | 25814 | 11606758 ~ 11606855 (-) | True | XLOC_028574 |
TCONS_00055433 | other | upstream | 27252 | 11608196 ~ 11608283 (-) | True | XLOC_028575 |
TCONS_00055457 | other | upstream | 694170 | 12275114 ~ 12286066 (-) | True | XLOC_028592 |
TCONS_00055464 | other | upstream | 832475 | 12413419 ~ 12433016 (-) | True | XLOC_028596 |
TCONS_00055465 | other | upstream | 1014736 | 12595680 ~ 12595804 (-) | True | XLOC_028597 |