RNA id: XM_021589643.2


Basic Information

Item Value
RNA id XM_021589643.2
length 1973
RNA type mRNA
GC content 0.48
exon number 10
gene id ppp1r7
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27051258 ~ 27055816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACATTATGACCAGTGGCGCACCCCTTTAGAAGGCAGCCTCCTGATTGACTGAGGAGATTACCAATAAAAAGGGAGGGTTATCAGGAAACAAACATGGCTACTCTGTTTGTTGGAGAGCCGCAAGAGATGGAAGTGGACCGGAAGGGCGAGTCAGAGGAGTCTGGAGATGATGAGACCAGGAGGAAGAGCATCAATGGGGAGGTTGATGTCAATCAGCCCCATACCACAGTTAAAGAGGAGTCTCCTGTTGAAATGGATACCATAATTCTGGACCCAGAGGAagagGATGTTGATCTTGTCCACTGTCGTATTGGGAAGATTGAGGGACTGGGGGTGTTGAGGAAGGCGAAGACGCTCTCTCTAAGGCAGAACCTGATCAAGATGATTGAAAACCTGGAGACGTTAGTGATGCTGAAGGAACTTGATCTCTACGACAACCAGATCCGCAAACTTGAGAACCTGCAGACCCTCAAAGAGCTGGACCAGCTGGACGTGTCCTTCAATCTACTGAGGAAGGTGGAGGGTCTGGAGAGTCTGACGGGGCTAAAGAAGCTCTTTCTGCTGCACAACAAGATCAGCCACATCGCCAACCTGGACCACCTCACCGGCCTGGAGATGTTGGAGCTGGGCTCCAACCGCATCCGGCTAATAGAGAACTTGGATGGGCTGTCCTCGTTGACGAGTTTGTTTCTGGGCACCAATAAGATCACTCAGCTGCAGCATCTGGAAGGCCTTCACAACCTGACAGTCCTCAGCATCCAGAGTAACCGCATCACCAAGATGGAGGGTCTGCAGGGTCTGGTCAACCTGAAGGAACTCTACCTGAGTCACAACGGCATCGAGGTCATTGAGGGCCTGGAGAACAATAAAAAGCTCACAACTCTCGACATCGCAGCCAACCGGGTAAAGAAAATTGAAAACATCAGCCATCTAACAGACCTACAGGAATTCTGGATGAATGATAATCAGCTAGAGAACTGGTCAGATCTAGATGAGCTGAAGAGTTCCAAGGCCCTGGAGACGGTGTACCTGGAGAGGAACCCCTTGCAGAAGGACCCCCAATATCGCAGGAAGATTATGCTGGCTCTGCCCACCGTACGCCAGATCGACGCCGCCTTCATCCGCTTTTGACCGGGCCACACCTCACACCCCTACCTTGGTGTCCCTCCACTCACCGTTCTTCCCCTGCAACTGCAAAATGGACCTCAGCTTACTGCACACAGACTCATTCACCACAGGCACACATCTACAGATACAGATGAGTGTCCTTGTATACCACACActtcagcacacacacattccGACCATCACGTTTCACTTGCCTTACCGTCTCATGTAAAACACGCATGTACACATTTACACTCACCATCTGATCTATGCTATTGTGTTAATGCATAGTAATTTATTGTCAGAATTGGACTGGATAGGGGCTGGGAGGAGTGGGAGCTGCAgggatgtccccccccccccccccccctattttaTTCCCTTTGGATGTGGAGTAGGGAATAATTGCTCTGCCTGCTTGTCCTTTTGTCTGGAGGGATTTAAAAGGAGAAGGCAGTCAGTCTTTCTCCTTTTGTTATTGAAATTGCACTGTACCTGGCAAGAAGGTGGGCTGGCTGTATTGCTGATGGTCTATTTAAGTGTTCATCACATTTCCTTCAGGAAGTTCTAAACCCACCAGACAGTTTTATTTTaaagaataaaatatatatatatattaaatgtgACAATGGTAGCTGCTGCCTTTCGTGGTGCTAATACAGGGTGTATTGGTGTGTATGATACTTGGTGTGGTTGCCATGGGGATATTTAGCTCACCATAACACTAAGTTTCCCTCAAATTGTAGCTACGTTAAACAGAcgctgtatcaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcag

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K17550 PPP1R7, SDS22; protein phosphatase 1 regulatory subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427714 lncRNA downstream 113789 26936445 ~ 26937469 (-) True G2123290
TU2427705 lncRNA downstream 129563 26921406 ~ 26921695 (-) True G2123281
TU2427703 lncRNA downstream 134044 26917009 ~ 26917214 (-) True LOC118944878
TU2427698 lncRNA downstream 139195 26911759 ~ 26912063 (-) True G2123275
TU2427696 lncRNA downstream 140192 26907953 ~ 26911066 (-) True G2123273
TU2427736 lncRNA upstream 17093 27072909 ~ 27075887 (-) False G2123309
TU2427737 lncRNA upstream 17093 27072909 ~ 27075887 (-) True G2123309
TU2427764 lncRNA upstream 37037 27092853 ~ 27093157 (-) True G2123334
TU2427782 lncRNA upstream 84126 27139942 ~ 27140186 (-) True G2123349
TU2427848 lncRNA upstream 85781 27141597 ~ 27158968 (-) True tox
XM_021589641.2 mRNA downstream 4777 27033696 ~ 27046481 (-) True LOC110508807
XM_021589642.2 mRNA downstream 4905 27033696 ~ 27046353 (-) False LOC110508807
XM_036965876.1 mRNA downstream 52865 26974438 ~ 26998393 (-) False tfa
XM_036966420.1 mRNA upstream 85728 27141544 ~ 27243306 (-) False tox
XM_021589654.2 mRNA upstream 247929 27303745 ~ 27316746 (-) False LOC110508819
XM_021589653.2 mRNA upstream 247929 27303745 ~ 27316749 (-) True LOC110508819
XM_021589657.2 mRNA upstream 421207 27477023 ~ 27494193 (-) False LOC110508822
XM_021589661.2 mRNA upstream 421207 27477023 ~ 27494193 (-) False LOC110508822
TU2426633 other downstream 982049 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1100805 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1776632 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1902738 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2316271 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1489125 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1489125 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1571239 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1606892 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1636323 28692139 ~ 28692470 (-) True G2125290

Expression Profile