RNA id: XM_036966420.1


Basic Information

Item Value
RNA id XM_036966420.1
length 3696
RNA type mRNA
GC content 0.48
exon number 10
gene id tox
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27141544 ~ 27243306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAATCCTACCATGCCCCATTCGCTTGCAGATGACGGTAGCCGCTGGATAGAAACAACTACTGTCGCTGCAAATGCATCTGTCAGAAAGAGAAAGACGCGCAATAACTTCTTCAACAATAGAGTGATAGCTTacatattttgaaagttacaaCATTTTAACTGCGTTTACCCGTTTACCAAGTCCGTCGTTCATAGTGCGTTGATAATATAAGTTTTTCTTTCTCCTGAAAAACCGCGAACGCATGTGAGAGCATAATAGTTTGCCATTTTTAGATTCAAACCCTACACTTTTTCCGACTTCGTCCATCAGTCTTTATAGAGCCTTCAACTTTTGAGGAATCGAAAGTAGAAGCCTGAGTGGAAAAGcttgtgtggagattgatgttTTACTGAAATGGACGTGAGAGTATATCCACCTCCACCACAGTCTTTATCAGCAACAGATTCTTCCCGATTGGGACCCTTGCAGTATACCGATTCCCCGTACTGCAATAAGTACGACAGTGAGGCCATGTTCCTGGGCATGCCAGAGGCTGGCCTGGACTTTGTGCCAACCAACCAGTTCCGTGTGCCTCCCAATCCCCACCAGACGCATCTCAGCGCCAAACAGACTGGACCCCTGTGGAAACGAGATGGCCCTGCTCACTCCGATGGATCCCGGCTACCCTGGTCCTACCCAGTGCCCAGTTTGGGGGATGAAGACTTCAACATTCCCCCCATCACACCTCCCACCATCCCAGAACACATGCTGCACCCCCACCTACCAGAGTCGGAGTCTGGCTCCTACCACCCGCTGGCTCCCGTTCACTCCCAGAGTGGCCTACACCCCTTCCACCTTCAGGGAATGGACATGATGGGCCAGGATGGAGGGCTCTTGAGCCAAAATGGCAGCCTGATGTCCAGCACCCTGTCTGTGATGCAACAAATGGTCAACTCCGATTCCCGGTACAGCAGCCATCAGCCAATGGAAGCACTCAGATCCAGGAGCCAATCAGGCATGGGACATCAGAGTCAACTTACCACCATCAACCAATCACAACTCAACACCCAGTTGGGACTGAGCGGAAACAACGTTACCCATAATTCCCCATCTCCCCCTGGGAGCAAGTCGGCCACACCCTCTCCTTCTAGCTCTGTTCATGAGGATGACAATGAAGAGTCAATAAAGCAGGCAGAGAAGCGACCGGCAGCGGTCGAGACGCCCAAAAAGCCCAAGACccccaagaagaagaagaagaaggatccCAACGAACCCTCGAAGCCAGTCTCTGCCTACGCTCTGTTCTTCAGAGACACCCAGGCAGCCATCAAGGGATCCAACCCCAATGCTACTTTTGGAGAGGTATCCAAGATAGTGGCCTCCATGTGGGACGGCCTTGGAGAGGAACAGAAACAGGTGTACAAAAAGAAGACAGAGACGGCCAAGAAGGAGTACCTGAAACAGCTGGCTGCGTACAGAGCGAGCCTGCTCTCACAGaGTTACATTGATCCAGGTGAAGTCAAGGTGTCCCAGGCCACCTCTATGCTGGGGCCCAAGCCCCCCGTGTTCCCCGGATCAGGCCAGCagcacccccacccccatcactcCCACCCCAGCCTCTACATGAGCCACCCCTACCACCACCAGAgccaccacccccacccccaccaccagcaACAGCAGTCCCAGCAGCACCAGGCCGGCCTCAGCCCCCACCTGTCCCCCCTCCAGGGTCTCTCCAGGGGGGTGGCCCCCCGGGCCAGTGGACCCCATCCAGGCGGAGTGTCTCTGGGCAGCATGGCGGCGGCGACAACCCCTCCCCTCCAGATCAGCCCGCCCCTCCACTCCCACTCTCACCTAGGAATGCACCACCAGCAACAGCTCAGCGGACACCCGCTGTCTCTGCACTCGCCCTCCATGGCCCAGGGATTCCCTCTCCAGTCAGAATTCCAGAACATGCTCAACTCGTCCGGTGGGCAGGGACTGTCCCCATCCATGGACTACAGACAGGTGTGTCGGAATGGGCCCAGCCAGCACCTCGACTGGACCAGCGAATACTGTGGCAACGGAGCTCTTCAGAGAGACAAGCCTCTGTTCCTGACCtgatctgacctctaacctccaCAAAACCAGCCCCGGAACAGACTACAATCCGACCCGGTCCACATTCGGTCCCACTCTGCGTTCACTGGACCAAGGCATTGCCCTCAACCCCAGAAGAAACTCCTTGACCACCACCCCCCACTCTGGCTAAACCATCTGACCGTCACTCAAACAAGAAAGGCAGAAGCACATTTTCCAAAACAtccatattttgatatgttttgaTTCTTTGTGATCTACTTTGAAAATAATCATACTGATGTCATGAGTGGGTTTTGGATTCTTTGTGACCCACACTCTACCCTCACCTGATATTAGATACAAATGTCAAGTTAATGTTTTTGGACTTTGCAATGCATGCCCATAAAGGCACAAATAAATGTGTTCAGAGATGTGAAAGAATAGGCAGTACTGTCCTCTCTACTGACGTGTCATTGGATCATTATTGGTATGTCACTGGGTTGTGTTTTGAGGAAGACAAGCTGGTGACGTAGAAGCGTTATGGTAGACCAGTGTTCAAATCCCAGAAGTTCATTTAGCACTTAGGGGCTCTTAGGTCTTTTTTTCCACACATCGCAAGATGTAAACCAAAACCCCAAattgacttttattttgaaaggaAAAGCAAGATCATCTTTATcatttgaaaaaataaataaagaacacCTATTATATTTCTATACCTCTttatctctcactctcgctctctgctACTGGACTGCCTTAGAGACTGTTGTGTCTTTGAGCAGTGTTGTGTTGCTCTTTCTAAACTGATGCTGATCATGTTCATAGGATCCTCTGTGGACTATGCCGAGGCTGGTTAGTATAGACATCACCTCAAGCTGTACATAGAATTTTGTGTTACTCTTGGTCCTAGGGTATAACAACAAAAGCTTTTTTCAAGTGCAGTGTGATTGTGAATTGGATCACACTGGTTTTAATTTAACTATCAAAGAAGGGAAATTGATTAAACGGCTGTTATAGTTGTTTGGATTTTATTGGGGCGTAAACATTTTCAAAATCATGATATTTGTAAGATAAAACTTGCTAAATCAGTAGTTTCCATTCTCTGAAATAAAGTCGTAAACTTTGGCTGCCCTTTACCTGGAAAACATCACAAAATATGAGTTTTGTGAAATTAGACAAATAAAAAGTTAGATTTGGTACAAGGAAAACATCTTTTTTGGTACGACTTCTGGGCATATTGATTACATGGATTCTCATCCCACTCCTGTGTCTGAGGTTGTTTCTCTTTATCAGTAGAAAGCGTCAGAATGAGAGTGGTAGAGACAGATTGGTAGAGTGGCAATATATATAACCCTGACATCTGGCTCGTCGTCACTCTTCTGATcactcccatctctctttctccaagtCTGTTCATCATGCTGCGCCTATTTATGAAACAATAACTGTAGGTGTTTTTTTAAAGTCCTTATGTTTAATAGCGTTGATGATGGCTGTCTTCTCTGTTCCATCTGGGTTCCTTTCTCTTTGGCAGAAAAACGCCTCCAGGCAACAACAATGTGAAAAATTGTGTTCTTATTTTTAGTTTCTAATGTGTTTGAAAAAAATAAAGTCAAACCTGCATTTTTGTGCAGTAATCACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427782 lncRNA downstream 1358 27139942 ~ 27140186 (-) True G2123349
TU2427764 lncRNA downstream 48387 27092853 ~ 27093157 (-) True G2123334
TU2427739 lncRNA downstream 65657 27023890 ~ 27075887 (-) False G2123309
TU2427736 lncRNA downstream 65657 27072909 ~ 27075887 (-) False G2123309
TU2427737 lncRNA downstream 65657 27072909 ~ 27075887 (-) True G2123309
TU2427939 lncRNA upstream 22189 27265495 ~ 27265695 (-) True G2123495
TU2427949 lncRNA upstream 30646 27273952 ~ 27274192 (-) True G2123505
TU2427954 lncRNA upstream 32473 27275779 ~ 27276393 (-) True G2123510
TU2427964 lncRNA upstream 36846 27280152 ~ 27280521 (-) True G2123519
TU2427976 lncRNA upstream 44464 27287770 ~ 27288089 (-) True G2123531
XM_021589643.2 mRNA downstream 85728 27051258 ~ 27055816 (-) True ppp1r7
XM_021589644.2 mRNA downstream 85733 27051258 ~ 27055811 (-) False ppp1r7
XM_021589641.2 mRNA downstream 95063 27033696 ~ 27046481 (-) True LOC110508807
XM_021589642.2 mRNA downstream 95191 27033696 ~ 27046353 (-) False LOC110508807
XM_036965876.1 mRNA downstream 143151 26974438 ~ 26998393 (-) False tfa
XM_021589654.2 mRNA upstream 60439 27303745 ~ 27316746 (-) False LOC110508819
XM_021589653.2 mRNA upstream 60439 27303745 ~ 27316749 (-) True LOC110508819
XM_021589657.2 mRNA upstream 233717 27477023 ~ 27494193 (-) False LOC110508822
XM_021589661.2 mRNA upstream 233717 27477023 ~ 27494193 (-) False LOC110508822
XM_036966000.1 mRNA upstream 233717 27477023 ~ 27494193 (-) False LOC110508822
TU2426633 other downstream 1072335 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1191091 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1866918 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1993024 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2406557 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1301635 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1301635 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1383749 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1419402 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1448833 28692139 ~ 28692470 (-) True G2125290

Expression Profile