RNA id: XM_021589659.2


Basic Information

Item Value
RNA id XM_021589659.2
length 3748
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110508822
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27477023 ~ 27501636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGCTGAGGGCGAAGTCACTCAAAAGTCGACGGGGTTGCTATGGGCTTCGGTTTATGAGGGCAGAGAGATTTGATTTCTACCGGGCCACCTTTATTGCAAGAAATTGACAGTGACGCTCGCTAATTTTGAATTTCCACTTGAATTCAAGCAACTTCGAATAGCCATGGTCACGAAGAAAAACCCACGAGGACAGAAACTGAAAGAGGGCAAAGCACAGCTAGCCAGTAAGAATGGCAAGAAGCCTGAGGGAGCAGGTGGAAGCTCCTTCTTCACCTGGTTCATGGTGTTGGCCCTCCTGGGGGTCTGGACCTCCGTGGCCGTCGTCTACTTCGACCTGGTCGACTACCAAGGCACCATCGCCAAGGCAAAGGACATGCACAGTACCCTCTCTGAGACACTGcaagGTAAACTTTCGTCCTATGACGCCGACGGAGATGGTGACTTCGATGTGGAGGATGCTAAAGTATTACTAGGACTGAAAGAGAAGGCTACTGTCGACATTAGCAGAGAGGGAGCACCAGAGGAGGCTCCTGCAGCACCTGTGGAAGAAGAACACGTTGTTGAAGAAGTGATCGAGGCCGCCAAAGCAGAGGAAGCTGCTGCTTTcccaccagAGCCTGAGGTTGTTGAGGAGGAAGAGCCTGAGGTGGATGTGCCTGAAATCTTTGAGGAAGAGCCCGAAGTTCTGGAGGATGATTTTTCTCCCTTCGAGGAGCATTCTTTTCCCTTCAAGGAGGATTCTGCTCACTTCGAGGAGGATGAGCCTCAAATGGAGGAGGATGAGCCTCAAATGGAGGAGGATGAGCCTCAAATCGAGGAAGAGCCCGAAGTACTGGAGGATGAgccagaggatgaggaggaggaggaggttattGAGGAGGCCGTACCAGTTGAAGAAGAGGCTGCCCCTGTGGAGGAGGTAGTTGCCACTGTAGAAGAGACCTTCGAGGAAGAGGCTGCCcccgttgaggaagaggttgtagAGGAAGCCGCCCCAGTCAAGGAGGAAGCCGCACCTGAGGATGAAGAAGATGAACCTGTTGAGGAGGTGGTTGATGAAGAGGCCAcacctgaggaggaagaggatgcaCCCGTTGAAGAGGAAGCCGTCCCAGTTGATTGGGAAGTCGCTGCCGTGGAACAGGCTGTTGAGGAAGAGGCCAACCCCGCAGAAGAAGAGGCTGCACCAGTTGACGAGGAAGCTGTGGAGAAGGAGCCAGCTGCAGAGGAGACATTGGAAGAGGAGGCAGCACTAGCAGAAGAGGAagaggtagaagaagaagaagcagcagaAGAAGAAGAGTCTGAACAGGAAGTAGAAGCTGAATCAGAAGAAACTCAAGAGGAGGAAGCTCTTCAGGAAGAGcttccagAGGAGGTAGATGAATTTGATGAGCCATTTGAGGAGTTCACAGAAGAGCATACCGAAGTAGAAGAACAGATTGAAGATGCACCAACAGAAAGGTAGAGCCTGCGGTCTCAGCGCAGTAAGACGGAGCGAGGACCAGCCCACTGAGCACGTGCAGCCGTGCTTCCCCACCTCCAGAGAAAGAGTAGCGTTGTCTCCGTTttttcactcacacactcagaatTACGTTTTTCTTCCATTAGTGTAAAATCTCACTGTTCCATTACTTGTTTGATTAGTATGTTGTTTTTCTCTCTtgcctttttgttttcttttctgTTCTACTTTGTTTCCACGTTTTTTAGTTTAAAGAATTCCCATTTCCTGTAATGGAAAGTATCATGTGATCATGTGAGTTGTAGGTTGTTTTTCCTTTCCTGTGTATAACAAGCAGAGGCACGTGTTGCTTTGCTAGTGAAAGATCTTCACATGTCTGAACCGAGTTCAGCAGTGTGCTTTCACCCTGTTGAATCGTGGGTCAGAACTTCaacattttttatgttttttttgttaagcgTGAAGGTATTATGCAAAGCTGCACTGATCTTTCGTGGCAATTTCACTCTAAGTTTTGTATTACCAGTATGTAGTGAGTCTACTACACGTGGAAGGTAAACTCGGACAAGTCAGGTGACGTGTtgggcgagtgtgtgtgtgctttagtGTGTATGACTGAGAATGTGTGTAGatgttttgtgtgtgcgtgcgactGTGTGTCTGTAGACATATCGCTTTGGAAAACAATCCCTATTAGCCGTAGTTCTCATTAAGATGTGTTTGAGACTCTTCCTCATTTCATTTTTGTTTGTTCCAACTCCTAGTACCTCTCACTCTGATATTTCTTAAGTACTGAAAGTGTTTTTGACTCACTCAGGCCTCGAGCCACAACAAGTGAACATCTTTTTGTATTTCTTAGGATCTATGGGAACACATTTATTTTCCAGCAATGCgagttttattttattgaaaCTTTCTTTTGTCACTTTTGGACAGTATTTCGGTTGGAAGTAAACTCTCCAAATGGAAGATATGTTGGCATATGTTATTTTGTTCTGGGAAAAACAGATACAAAAACAACACAGGGAGATGAGGGAAGGGCAGGGTGTCCAAGTATATGGTCGTAACTCTTAGGTTTAGCTGAGTGTGGATGTAGCTGCTCTGGGCTAACGGTCTGACACAACCCCACCCAGTCTCCTGGTGAAACAGGCACTCCTGACTGCTGTGCAGTGTGTGTCCCAGGTCCTCCCAATaggtctgccacacacacacacacctggtccaaCAGGAATCTGATTCATCCAAATTCATAATTCAATACACTTAAACAAAAAAGTCTGCGTCAACAAGCCCCTAAAACCAGCTGTAACCAACTGCTCAAAGAGAAATGCTGTAGTACGTCTAGAATGGAACGTGACTGTGTAACCTGTTAACTAATATCCTAACCACACCCAACTCGAATTTGGCTAGCATTTACTATTGACGTTATTGTCATTAAGGTTGTCATTGTTGTTTTTACTACAAGGACAATGCTAGCTCGTGATCTGGACTTGAGGCTGGAGGGTTAAGATCATGTTTATTATTTTGAAGGAGTTACGTGTTTAGTCTGTGTTCAAACTCCTCCGTAATGTTTCTGTGAATTCAAATtggtgtgttttattttttaaatctttccATTGTAGCAGTTTTCTGTGCATTGTGGTATTAAGGGGCCAGATGATATGATGCTGATTTAATGTGATGGACTGTAGGAAATGCTGCAATGCAAATCTTTTCTGGGGGGTGGACGGTTTGTTTTGACATATAAAACAAGTCAAGTGGTTGCAATATAGTTTTTAGTACATATTTTGTCTTTTTTCTATAACACTAATGGGTATTTTTCTATTCCCTAACACTTTTGAAGTTGATGTGAATTTTTAACGTggtgttaattttacattatacAAAACTTTACGAGATCTGTTCTagatttttaaataaaaatacactttCTAGGATCAAAACTATTTTTCTGAATTTTAAAGAAAGTGTTCAACTTTTTTGAAAGCCATACGtgaaaggtgggcactgctgttCAGAACAGACTTGATTAACTCCAAGGGGAAGCCATTGCACAACTAGCAATAACAGAAAACATCACTACAATCTCAAATTGCAGTTCACATATGAACAGAAGTTCACACACAGAAAAACATGTCAGAGGTTTACGTAGTATCCTGCTGTACAGGCTAAAAGGTTTTTAAATGATTGTGAAAATGCATCCTGTATGCAGGGTTGGATGACTGTCACAGTTTCTGTAAATGTTCTGTTGAGGGGCTGCAATAAAGGTTTGGGACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428807 lncRNA downstream 5270 27471521 ~ 27471753 (-) True G2124278
TU2428797 lncRNA downstream 16360 27460401 ~ 27460663 (-) True G2124268
TU2428795 lncRNA downstream 17266 27459492 ~ 27459757 (-) True G2124266
TU2428786 lncRNA downstream 39824 27436669 ~ 27437199 (-) True G2124257
TU2428763 lncRNA downstream 68572 27406992 ~ 27408451 (-) True G2124236
TU2428823 lncRNA upstream 7437 27509073 ~ 27509351 (-) True G2124290
TU2428854 lncRNA upstream 63445 27565081 ~ 27565425 (-) True G2124319
TU2428857 lncRNA upstream 66979 27568615 ~ 27568884 (-) True G2124322
TU2428859 lncRNA upstream 67763 27569399 ~ 27569602 (-) True G2124324
TU2428861 lncRNA upstream 68013 27569649 ~ 27570317 (-) False G2124325
XM_021589653.2 mRNA downstream 160274 27303745 ~ 27316749 (-) True LOC110508819
XM_021589654.2 mRNA downstream 160277 27303745 ~ 27316746 (-) False LOC110508819
XM_036966420.1 mRNA downstream 233717 27141544 ~ 27243306 (-) False tox
XM_021589643.2 mRNA downstream 421207 27051258 ~ 27055816 (-) True ppp1r7
XM_021589644.2 mRNA downstream 421212 27051258 ~ 27055811 (-) False ppp1r7
XM_021589663.2 mRNA upstream 10565 27512201 ~ 27517367 (-) True LOC110508824
XM_036966011.1 mRNA upstream 16739 27518375 ~ 27561560 (-) True LOC110508198
XM_021589665.2 mRNA upstream 90135 27591771 ~ 27595809 (-) True LOC110508825
XM_021589674.2 mRNA upstream 331724 27833360 ~ 27837602 (-) True LOC110508831
XM_036966316.1 mRNA upstream 407578 27909214 ~ 27922229 (-) False LOC110508834
TU2426633 other downstream 1407814 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1526570 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2202397 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2328503 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2742036 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1043305 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1043305 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1125419 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1161072 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1190503 28692139 ~ 28692470 (-) True G2125290

Expression Profile