RNA id: XM_021589665.2


Basic Information

Item Value
RNA id XM_021589665.2
length 2355
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110508825
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27591771 ~ 27595809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACCTCTACTGTCAGCTAGCTGTGTTCTCTCTGCTAGGGAGTCTACACTGAACCTAACCATCGGACCTCTCTAAGGCAGCTTGTGATCTGGCATCCACCACTAGCCTTCTGGAGTATCTTTAGCAACCATGATTATCACCATATCTTTGATTTGGGCAGTGGTGATTGGTTTTTGCTGCTGTCTGTGGCTTGCTCTGGGGATCCGCAAGAGACAACCAGGTGAGCCTCCGGTGGAGAATGGTTTGATCCCGTACCTCGGCTGTGCCCTCCAGTTTGGAGCCAACCCCCTGGAGTTTCTCCGGAGCCGACAAAAAAAATACGGCCACATCTTCACTTGCAAGATTGCTGGAAAATACTTTCACTTCCTGTGCGACCCTTTCTCCTACCATGCCGTCATCCGCCAAGGCAGGCATCTGGACTGGAAGAAGTTCCACTTCTCTACCTCGGTCAAGgCGTTCGGCCATGACAGCATGGACCCCAGACACGGTTACACCACAGAGAACCTCCACCAGACCTTCTTGAAGACCCTGCAGGGCGAAGCCCTCCCCTCGCTCATCGAGACCATGATGGAGAACCTACAGTCTGTCATGCTGCAATCCGACACCCTCAGCCCCAGCAAGGACCGCTGGGACGTGGACGGCATCTTTGCCTTCTGCTACAAGGTCATGTTCGAGTCAGGCTACCTGACGCTCTTCGGCAAGGATCTGGGAAACAACAAGAATGCTGCGCGCCAGGAGGCCCAGAAGGCGTTGGTGCTTAACGCTCTAGAGAACTTCAAGGAGTTTGACAAGATCTTCCCGGCTCTGGTGGCCGGCTTGCCCATCCACGTGTTCAAGAGCGCCCACTCTGCCAGGGAGAACCTGGCTAAGACCATGCTGGCCGAGAACTTAAGCAAACGCCAGAACATATCAGACCTGATCTCATTGCGCATGCTTCTAAATGACACGCTGTCCACCTTCAATGACCTGAGCAAGGCCCGCACCCATGTGGCACTGCTCTGGGCCTCACAGGCCAACACACTGCCTGCTACTTTCTGGAGCCTGCTTTACATGATCAGGAGTCCAGAGGCTATGAAGGCAGCCAATGAGGAGGTGAAAAAGATTCTGGAGAGTTCAGGTCAGCGTGTCGACCACAGCAAACCACAACTCACTCTCTCCCGGGAGGACCTGGACAACATGCCTGTAATAGACAGCATCATTAAGGAAGCCATGCGTCTGTCAAGTGCGTCAATGAACGTCCGAGTGGCTAAAGAGGACTTCCTGCTTCACCTTGACAACCAGGAGTCGTACCGCATCCGCAAAGATGATGTCATCGCCCTCTACCCCCAGATGCTCCACTTTGACCCCGAAATTTACGAGGACCCTTTGACCTACAAATACGACAGATATTTGGATAACAGTGGCCAAGAAAAGACGACGTTCTACAGGGAGGGGCGCAAACTGCGGTACTATTACATGCCTTTCGGCTCTGGGGTGACCAAGTGCCCCGGGCGTTTCTTCGCAGTGCACGAGATCAAGCAGTTCCTAGCGCTGGTGCTCTCCTACTTCGACATGGAGCTCCTAGACTCAGCCGTTAAAGTGCCTCCTCTTGACCAGTCGCGTGCAGGCCTGGGGATCCTGCAACCCACCTATGATATTGACTTTAGATATAAACTGAAAACTCAGTAAGACAGACTCGACTGATATACTTTCACCATAATGTGAATTGCATACATTGTATATTTAAGAATTTAAGCCACAatgatcccactgggcacacactggttgaatcaacattgtttccacatcctttcaatgaaatgacgtggaaccaacgtggaatagacgttgaattgacgtccgCACTCAGTGGGATTTAAATACACTGCGATGTACTGTtataatgtttttttaaagttgATACAGAGAGGTTTTTGTTAGCCTCAGAAAGGTAGCATTGGTGTAAAGGCCATTTTAGGAAGAGTCCTGTTTCAAAAGTGTCTTTGATGGAACTCCATATAAATGTTATCAGTAATATTTACTGAATCTTCCACGTAAGCATTATTACTGTATCACTATTGCCGACCGCAATCTTTGAACTGTGAAATCATTCAACATTTCAGTTGTGCTTCTGTTTGTGACCTTCACAATCAGTAGTTGGTAATTGCCCCCCATTTACTGTGCTGTTGAATGACTCTTTTTGCGCTGATTGAGTAGTGTAATGTACATTCTAGTTCCGTTGAAGTATTCCCTATGCTGGGATAAAATAATTGTATTATCTgtattaatgtttactgtgatATACCGTACAAAACAAGTATAAAAATGCATGTGATGTTTACTTTACAAAACCAGTATAAATGCAATACATTTCTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00489 CYP7A1; cholesterol 7alpha-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428872 lncRNA downstream 4850 27586698 ~ 27586921 (-) True G2124335
TU2428862 lncRNA downstream 21196 27569852 ~ 27570575 (-) True G2124325
TU2428861 lncRNA downstream 21454 27569649 ~ 27570317 (-) False G2124325
TU2428860 lncRNA downstream 21454 27569852 ~ 27570317 (-) False G2124325
TU2428859 lncRNA downstream 22169 27569399 ~ 27569602 (-) True G2124324
TU2428889 lncRNA upstream 21549 27617358 ~ 27645255 (-) True G2124352
TU2428956 lncRNA upstream 144824 27740633 ~ 27745009 (-) False G2124408
TU2428958 lncRNA upstream 144824 27740633 ~ 27745009 (-) False G2124408
TU2428959 lncRNA upstream 144824 27740633 ~ 27745009 (-) True G2124408
TU2429093 lncRNA upstream 345308 27941117 ~ 27941947 (-) True G2124521
XM_036966011.1 mRNA downstream 30211 27518375 ~ 27561560 (-) True LOC110508198
XM_021589663.2 mRNA downstream 74404 27512201 ~ 27517367 (-) True LOC110508824
XM_021589659.2 mRNA downstream 90135 27477023 ~ 27501636 (-) False LOC110508822
XM_021589674.2 mRNA upstream 237551 27833360 ~ 27837602 (-) True LOC110508831
XM_036966316.1 mRNA upstream 313405 27909214 ~ 27922229 (-) False LOC110508834
XM_021589680.2 mRNA upstream 313405 27909214 ~ 27924372 (-) False LOC110508834
XM_021589678.2 mRNA upstream 313405 27909214 ~ 27924379 (-) False LOC110508834
XM_036966317.1 mRNA upstream 313405 27909214 ~ 27924379 (-) False LOC110508834
TU2426633 other downstream 1522562 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1641318 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2317145 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2443251 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2856784 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 949132 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 949132 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1031246 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1066899 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1096330 28692139 ~ 28692470 (-) True G2125290

Expression Profile