RNA id: TCONS_00055434


Basic Information

Item Value
RNA id TCONS_00055434
length 837
lncRNA type lincRNA
GC content 0.43
exon number 4
gene id XLOC_028576
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11610718 ~ 11692199 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAAAGGTTCCTTCATGGGAACTTCTTGGATTCTCTCTCAGGAGTAGTGGGATGGGGAACGAAGTCAGAAGATGTCTGCGTGACATACATCTGTATTGGTGTTCCCAGGGCAGGTGGATGGGGGCGATGGAAGGATGCCTGTTTGTTGTTAATTGCTGTGAATGAGGCCCATGGGATGAACCAGAAATGCAGGCCACTGAGCAGAACTGCACTTGGACCTGgggtcgccactgcggaatgaaacAACAactttatccagcatttgttttacacagcagatgcccttttagctggaacccggtactgggaaacattcaagcgacattgctaaccaccgagccaacGTTTATTCTTCCTTCTAAACTCTTCCTTCAAAATCAGCACAGAAATGTGGAAAAAGGCTATTTCATCCTGACTTAAAGATTAAATTTTATTCTCCTGTTTCTTTCAAAGCCATTTCTGCACCTCTAGAGGCAATACCCGCGATTCCAGAGGTAACAGTTGTATCCAAACAAGCTTCTGACATGCTTTCTCCATCtgccattattaaaaaaatacccTTACCACTAGTTTTGCCTTCTCAGACTGGCTAATAACCACAGCGGTACACAGTCACACTGTTATTATTTGCCATTCACAGGGCCTAGTTCTGCTATAGAGACAGGTGTGATTTCTCAAGACAGCCAGTTCAGTAATATGtagctgtaaaaaaaacaaacaaaaacacctgAATTCCTAGCAGGACCTTTAATAGGCGTTGCAGGCTGCTAGAGTTGTGCTTTTCTGAATAGTGTGTAGCATACGAGATATTTTCTCTCCAATTAAACTGACATATC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000150651

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055430 lncRNA downstream 29774 11576845 ~ 11580944 (-) False XLOC_028573
TCONS_00055426 lncRNA downstream 206541 11402691 ~ 11404177 (-) True XLOC_028572
TCONS_00055422 lncRNA downstream 362433 11245332 ~ 11248285 (-) True XLOC_028571
TCONS_00055421 lncRNA downstream 423782 11179509 ~ 11186936 (-) True XLOC_028570
TCONS_00055416 lncRNA downstream 485068 11124613 ~ 11125650 (-) False XLOC_028568
TCONS_00058104 lncRNA upstream 116394 11753630 ~ 11754856 (-) True XLOC_028578
TCONS_00058105 lncRNA upstream 117760 11754996 ~ 11758042 (-) True XLOC_028579
TCONS_00058106 lncRNA upstream 121046 11758282 ~ 11768254 (-) False XLOC_028580
TCONS_00055438 lncRNA upstream 121046 11758282 ~ 11768254 (-) False XLOC_028580
TCONS_00058107 lncRNA upstream 121046 11758282 ~ 11780662 (-) False XLOC_028580
TCONS_00055431 mRNA downstream 7569 11577909 ~ 11603149 (-) True XLOC_028573
TCONS_00055428 mRNA downstream 16516 11573568 ~ 11594202 (-) False XLOC_028573
TCONS_00055427 mRNA downstream 29770 11573568 ~ 11580948 (-) False XLOC_028573
TCONS_00055429 mRNA downstream 33465 11574907 ~ 11577253 (-) False XLOC_028573
TCONS_00055424 mRNA downstream 205751 11401121 ~ 11404967 (-) False XLOC_028572
TCONS_00055436 mRNA upstream 94920 11732156 ~ 11751037 (-) False XLOC_028577
TCONS_00055437 mRNA upstream 97126 11734362 ~ 11737939 (-) True XLOC_028577
TCONS_00055442 mRNA upstream 167439 11804675 ~ 11810799 (-) False XLOC_028581
TCONS_00055443 mRNA upstream 171901 11809137 ~ 11810365 (-) True XLOC_028581
TCONS_00055444 mRNA upstream 176542 11813778 ~ 12007404 (-) True XLOC_028582
TCONS_00055433 other downstream 2435 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 3863 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 949041 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3022810 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3469252 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 637878 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 776183 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 958444 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 1140473 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 1269745 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

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