RNA id: XM_021589674.2


Basic Information

Item Value
RNA id XM_021589674.2
length 1578
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110508831
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27833360 ~ 27837602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGTGCGGCCAAGACAGTCAAAAAGGAAAATGGAGAGGGAAAAGTTCCACCCTCACTAATGCAAAGATTGCTTTCGCTAGAGCATGGGGTTGGTGCAGCTGCCTCTGACACTGGATGGAATCTATATGGGACTATTATCCTGCTGGATCTGCGTTTTGTTTTAGGGCTACAACGTAATGTATTGGAAAAGCGAACAAATGTTGGCTTGCCCCGAGGTGGATGACATTGAAAATGGGTTTAACTCGACCTTCGACAGCACGGGCACATCGGATTACATTTTTGGAGATGAGTCCTATTCACCATCTTCGTCTTTGTCTTCCTTGACACCGCAGACGATGGCATCAGCCTCTCTGGGGAAAAGCCTTTGTACAAGTTGTGGTTTGGAGATAGTTGACAAATATCTACTCGAGGTGAACAACTTGTGTTGGCACGTGAACTGCCTCTCGTGCAGCATGTGCCAAACTCCTCTAGGAAGACATGCCAGTTGCTACATCAAAGACAAGGTGGTTTTCTGCAAACTCGACTACTTCAGGAAGTATGGAACTCGCTGTGCCCACTGTAGCAGGAACATGCACTCCAAAGACTGGGTGAGGAGAGCAAAGGGCAACACCTACCACCTGGCCTGCTTCGCCTGCTTCTCCTGCAAGCGCCAGCTCTCCACGGGGGAGGAATTTGccctggtggaggagagggtgcTGTGCCGAATCCACTACGACTCCATGCTGGACAACCTGAAACAGGCCATGGAAAGTGGTGTTACTGTAGAGGGAGCCCCACCATCAGAGCAAGAAGGGTCTCATCCCAAACCAGCTAAGAGGGCTCGCACTAGCTTCACCACAGACCAGCTACAGGTGATGCAGGCCCAGTTTGCTCAGGACAATAACCCAGACGCTCAGACCCTCCAGAAGCTGGCAGAGAGGACTGGCCTCAGTCGCAGAGTCATTCAGGTTTGGTTCCAGAACTGTCGAGCTCGTCATAAGAAGCATGTGAGCCCTCAGCACCATGTGCCATCTGCAGCGACGTCGTCACTACAGCAGTCCAGGCTTTCTCCGCCTCTTATGGAGGATCTACACTACACATCCTACATACCAACAGACACACCCGTGCTTACAGCACTACACACTTACATGGATGTgcactctccctcctccctggtgTTCCAGCCTCTTTTATACCATTCCATGACACAGCTGCCAATCAGCCATGCCTGATCTTCACATCCCGCACCCTGCAGAACCGGCCCTTACCATTGGTTAGAATGCTGAGGAGCCAATGCGAAAGCCCTGTCCATTAAAGGGTGGGGTGCAAAATGATTTGCTATGGGGATTTATCGAAGGAGATCCAATTCAGATGTAAAATAAGGTTAATATGTAAACTTGTTGTTGATGTATTGTACATATTGGTTGGCATTTAATTTATTTGAGATATGTGACTGAGcactttgtaaaaaaataaatgtattaatagatgtgtacactgaacaaaaatggaatatgcaacaatttcaaagatttttactgagttacagttcataaggaaatcagtcaattgaaaaattaattgggcactaatctatg

Function

GO: NA

KEGG:

id description
K09375 LHX6_8; LIM homeobox protein 6/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428956 lncRNA downstream 88351 27740633 ~ 27745009 (-) False G2124408
TU2428958 lncRNA downstream 88351 27740633 ~ 27745009 (-) False G2124408
TU2428959 lncRNA downstream 88351 27740633 ~ 27745009 (-) True G2124408
TU2428889 lncRNA downstream 188105 27617358 ~ 27645255 (-) True G2124352
TU2428872 lncRNA downstream 246439 27586698 ~ 27586921 (-) True G2124335
TU2429093 lncRNA upstream 103515 27941117 ~ 27941947 (-) True G2124521
TU2429089 lncRNA upstream 105773 27943375 ~ 27944688 (-) True G2124520
TU2429145 lncRNA upstream 156797 27994399 ~ 27994967 (-) True G2124562
TU2429151 lncRNA upstream 159675 27997277 ~ 27998017 (-) True G2124567
TU2429210 lncRNA upstream 247514 28085116 ~ 28086921 (-) True G2124618
XM_021589665.2 mRNA downstream 237551 27591771 ~ 27595809 (-) True LOC110508825
XM_036966011.1 mRNA downstream 271800 27518375 ~ 27561560 (-) True LOC110508198
XM_021589663.2 mRNA downstream 315993 27512201 ~ 27517367 (-) True LOC110508824
XM_021589662.2 mRNA downstream 331724 27477023 ~ 27501636 (-) False LOC110508822
XM_036966316.1 mRNA upstream 71612 27909214 ~ 27922229 (-) False LOC110508834
XM_021589680.2 mRNA upstream 71612 27909214 ~ 27924372 (-) False LOC110508834
XM_021589678.2 mRNA upstream 71612 27909214 ~ 27924379 (-) False LOC110508834
XM_036966317.1 mRNA upstream 71612 27909214 ~ 27924379 (-) False LOC110508834
XM_021589677.2 mRNA upstream 71612 27909214 ~ 27924382 (-) False LOC110508834
TU2426633 other downstream 1764151 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1882907 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2558734 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2684840 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 3098373 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 707339 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 707339 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 789453 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 825106 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 854537 28692139 ~ 28692470 (-) True G2125290

Expression Profile