RNA id: XM_021589686.2


Basic Information

Item Value
RNA id XM_021589686.2
length 3344
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110508837
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27933209 ~ 27937812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtTAGGGTTTAGgcaagggttatggttagggtaagagCAGGAGTTAAGGTTAGAGTAGGGACGTTCCAAAGATCCCGGGATGGACTTAAACCATTTTTTTGTAGCTAGTCACCCGCCATTCCACTCGCTAGTGTTTCGTTCCATCATATAACCTTTATGGTGCTTCTGGCTGTGGAGATAGCCAGTGGGTAATGATGGAGCTGGAGGAAGTGCCGGACACAATTAGTCAGGCCAGACACTCTCTCTTTGGATGCAACAACAAGAGGGGGGATAAAAGGCAACGAGAAAACAGCACTGACGAGGATGGAGGGGAAGTACAAGAGAATGACTGGGATGAAAACTATGAATGTGACAGCAACATATCATATTTCGAAGATGAGATGGATCGACTTTTGGACCCAGAGGAAAATAAAGACTGTTGGACAGAACCTTCAGAGACTGTAGACTGCAATGGAACAGCAGTTACAGAGACTAGAGGGAGGGAAGACTCCCTGTCCAATGGAACAGAAATTATAGAGCTTAGAGTGGGCAGTGATTCTCCTCCCTGTAGGACAGCAGTTATAGAGACTAGAGGGAGGGATGACTCCCTGTCCAATGGAACAGCAGTTATAGAGACTAGAGGGAGGGATGACTCCCCTCCCAAAGCGACAGTCTCTTTACAGTCCAGAGTAAGGTTTCCCTCGTCTTCCTCCTTAATAGATTCCGATTTCAAAGAAGAGTTGGATCAACTTTTGGACCAAGATGAAGACGGTTGGACAGAACATTCAGAGACGGTAGACGGGAATGATTCCCCGTCCAATGGGACAGACTCTTCACAGCCCAGAGTAAGGggttcctcccctctctccactgaggCTTCAGAGTCCAGTGAGGAGGATGAAGACACCTTTTCCTTTGAGACAGAAGCCATAGAGACCAGAGCTTCAAAAAAGAGAAAAACCATTTCCAGCCCTAAAGGAACACAGAAAAAGGGGCAAAAGAAGGCCAGgcctccatcctctcccctctgGTTATCCAGCCCTGCCAAATCCAGAAGGAACACTCATGCAGCCACACCTCTTATCATTGGGtcagagaggaggtggaagacTGAGGATGAACCAGACCAAGAGCCTAAACTGTTCCCCTTCGAACCAGCTAGGACTCCTGGACCCCAGCTAGACACTTCAAAGAACTACACTGTTCTAGAGCTCTTCCAGCTCTTCTTCAGTAATGACATTGTTGATACTCTCTGCTCAAACACCAACAAGAATGCCAAGAGAAGACATGAACAGGGATTTAAACCTGTATCTGTGGAGGAAATGTACAACTACCTCAGCATTGTAATCTATATGGGTCTGCTGAATGTGCACACTGTATCAGACTACTGGGTCCCGAACAGGTTGTATGGTATTCCTTTTTGCCGTACAGTCATGACTATGACAAGATTTCGGGCAATCACCTATTCACTGCACATGAGTGACCCAGCAGAGGATGAGGAAAACGACAAGAAGAAGGGGACTGCAGACTATGATCGGCTCATGAGAATCAAACCTCTAAAAGACCAGATTTTGGATGCATGCAGGGCCTTCTACCACCCATTCCAGAACCTTTCCATTGATGAGCGCATGGTGCACTCCAAGGCTCGCCACAGCCTCAAACAATACATTAAATCCAAGTCCTACAGGTATGGATTCAAGCTGTATGTTTTAGCAGATTCAAGAAATGGCTACACGTGCGACTTCAAAGTCTTTATGAGCAAAAATCCATCAGCTTCAGGCAAAGGGGAGAGCTATGACGCTGTCATTGACCTGTTGAATATCCCTCACTTGGGCACTGGGTACCACATTTACGTTGATAATTATTTCACCAGCACAACTCTCTTCCGTGACCTGTACAAGAACAAATTAGGAGCTTGTGGAACCATACGTGAAAACCGTGTGGGCCTTGCTGGTGTTCAAGAGAACAGTATGCCACCCAGAGCAAAGAGAGGGACCATCCGCTGGCTTCGTGACGGGGAGCTGCTCTTCACCAAGTGGATGGACGCACGACCAGTCATCATGTGTACCACCATCCATAAAGCCTTTGCAAAGGAGCAGGTGCAACGACGCAAGAGGTTAGAGGATGGCACCTGGACAACAGAGCCTGTACCCGCCCCAGCGCCGATCAAGTCCCACAACAAGTATATGGGGGGTGTGGACCTGTCTGATTCCCTTATCAAATGCTACAGTGTGGCCCAGAAAACCATGAAGTGGTACAAGACCTTCTTCTATCACTTTGTAGATGTTGCTGTGGTGAACAGCTGGCTCATGCACAAGGACATGGCTGTGACTAAGAACACAAAGCCCATGGCCCAAAAACAGTTCAGGGAGAAGCTCTGTTCGCAGCTTGCTGACATTGCACTGAAAGGGGATGTTCAGGAGGAGAGGGACGAGGAGCAGAAGGAACAACCGAGCGAACAGCGAGTGGAAATGCAGAGTGAAAAGCATGGTGAAAAACAGGATGAAAAGCAGggtgaagaagaggaagaggtggaaGTTGGTTTATTGTGCTGTCCTGTGCCCACAAAAGATCCCATCACTGTTGCGTTGTGTAATAAAGCTTCTGAGGGAAGGAGGCAGTGTCATTTGTGTAAGCACAAGACCATTTGGCAGTGCGAGTCCTGCAAGGTGGCACTCTGCATAATACCAGATAGGAACTGCTTCAGAATATGGCATGTGAAAAAAGACAATGACAAGCAAGATTCAAGTTAACAGTTTATTTTCATTCCAGGGGTTAGGCCTACAGGATTTCTGAATTTGTGGGATGTATAGGGAATTGTTGCGCCTATATATTGTCacacattgggccagtaaccgaaaggtcgctggtttgaatacctgatccgacaaggtgaaaaatctgtcgacgtgcctttgagcaaggcactgtaCCCTAATTTGCCCCAGGGGcgccatactactatggctgccCCTGTAAATCAACagatttcactgcacctatccggtggaTGTGATGAcaaatctattttttttattcaaatgtaTGTGTTCACCACAAATGTTTGCTTATGGTTGCCAATAGATTTGTGCGGTAAACACATGGCTTGCTATAACTGCCAAAAGCTCAACAATGATTTCTATATCACATATCAGGAATTGCTGAACAAAAACAGATTGGAAGACATTTTGCTGTCCATTAGAGAATTAGCAACTGTTTTTTTTGATCATTTTGGAAATTGTTTCAGATCATTCTGAATTTGTTGTTCACCTTTATGCTTTGGAATTGCCACTTTGGGAACATCTCAGCTTGCCTGCTTTGGGTACCAGGGTTTGggttaataaataaaaacatctatAACATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428956 lncRNA downstream 188200 27740633 ~ 27745009 (-) False G2124408
TU2428958 lncRNA downstream 188200 27740633 ~ 27745009 (-) False G2124408
TU2428959 lncRNA downstream 188200 27740633 ~ 27745009 (-) True G2124408
TU2428889 lncRNA downstream 287954 27617358 ~ 27645255 (-) True G2124352
TU2428872 lncRNA downstream 346288 27586698 ~ 27586921 (-) True G2124335
TU2429093 lncRNA upstream 3407 27941117 ~ 27941947 (-) True G2124521
TU2429089 lncRNA upstream 5665 27943375 ~ 27944688 (-) True G2124520
TU2429145 lncRNA upstream 56689 27994399 ~ 27994967 (-) True G2124562
TU2429151 lncRNA upstream 59567 27997277 ~ 27998017 (-) True G2124567
TU2429210 lncRNA upstream 147406 28085116 ~ 28086921 (-) True G2124618
XM_021589683.2 mRNA downstream 3113 27923767 ~ 27930096 (-) True mrpl37
XM_021589677.2 mRNA downstream 8827 27909214 ~ 27924382 (-) False LOC110508834
XM_021589679.2 mRNA downstream 8827 27909214 ~ 27924382 (-) True LOC110508834
XM_021589678.2 mRNA downstream 8830 27909214 ~ 27924379 (-) False LOC110508834
XM_036966317.1 mRNA downstream 8830 27909214 ~ 27924379 (-) False LOC110508834
XM_036965971.1 mRNA upstream 27176 27964886 ~ 27984135 (-) False LOC110508841
XM_036965969.1 mRNA upstream 27176 27964886 ~ 27984136 (-) False LOC110508841
XM_036965970.1 mRNA upstream 27176 27964886 ~ 27984136 (-) True LOC110508841
XM_021589692.2 mRNA upstream 61351 27999061 ~ 28002198 (-) True LOC110508843
XM_036966771.1 mRNA upstream 107140 28044850 ~ 28068458 (-) True LOC118944862
TU2426633 other downstream 1864000 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1982756 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2658583 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2784689 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 3198222 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 607231 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 607231 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 689345 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 724998 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 754429 28692139 ~ 28692470 (-) True G2125290

Expression Profile