RNA id: XM_036965969.1


Basic Information

Item Value
RNA id XM_036965969.1
length 5074
RNA type mRNA
GC content 0.51
exon number 19
gene id LOC110508841
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27964886 ~ 27984136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCTCCTTATTGTAGCGTTATTTTTCCATATGGCTTTTATTTTGCAATATGGCTAAACAAACTCACTGAAAACCGGAAGCTCTGAAATAGTGATGCTTGTGGAACACGCGCGTAGTAGAAAGACACGGATGGAGATTCCTGATCAAAAACAAGAAGTCAATTGTGTCAGAAGATGAGTTCGCAACAATATTCACGACCGGGAATACCCCCTGGTATGGGAAAAAAACAGATTCCCGGAGGAAACACTGCAATGGTGGCTAGTAGTCAACCAAACACAACAGGTGGGACAGACGATAGCAGCCGTGACCCTCACCCAGACCACAGTCCTTATGACCGCCCCAGTGGTGGTAGTGGAGCACCGGGGTTTAGAGATGACAAGCAGGAGACAGTGGTGGTCCGGCCTTACCCCCAGGTCCACGGCCCCTCCCAGGGTCACCACCCAACACTACCTCAGCACCTGCCCCTCCAGCAGGGCATGCCCGTCACAGTGTCAGCTCCTCCACCGCACATTCCCCAGGGCCTGCCTCTGGCCTTCACTGAAGGACCTATAAAGGTGCAGTCATCTCTGAAGTCGCCCATGCCCAGTCGAGTGATTGCCCCAGCACCAGCCAACATCCAGGGCCACATCTCCCTGCCACCCAAGGTGCCAAGCCACATCACTGTAACCATGGAGAGCACTGTGCCTCCGACCCCCGGCATCCCTGTAGCAACTATCAGTGGCCAACAGGCGTGGCGTTTCCAGGGCAACCCCAGTAACCTGCACCATCACGTGCAGATCATTCGCAGCAACGGCCCGCCCTTGCAGCTCGGCTCCACTGGCATTCCCCAGCACACCTTTACCTCCCATCTACCCCGAGGAGCTGCTGCAGCTGCTGTGATGTCCAGTTCCAAAGGACCCACCGTACTGAGACCTGCTACAGGCCCTGGTAGTGGTACTGGCCCACCTACTGTCCAGCACATCATCCACCAGCCTATCCAGTCCCGGCCAATAGTAACAACGTCCACGGCTGTGTTGCCCACGGTGGTTGCCCCGGTAACTGCCACACGGCCTCAGTCCCCAGTGGTTAGCTCAGCCACGCACTCCGCCGAGATGGTTCATGGGCGTCCAGGGCTGACCGTTCACCCCCCTCCAGCCACTCTGAGCATCCAGCGTCCTCCCCAATCTCGGGAGACCCCCACACGCATCACCCTGCCCTCTCACCCTGCCATTGGGGGTCAGAAACCCCAGTTGTACAACACCATGGCACAGAAGCCCATATTCAGCAATGTTACTCCTGTTGCTGCAGCAACTGTTGCCCCCATATTAGCCACCAATACTGCTCCATCGCCTAGCACTACAGGCTCAGGACCCCACCCCAACAGTAACATCGTCACCATGGCGATGCCCTCTCATTCCTCCCACGCCACAGCAGTCACCACGTCCAACATCCCCGTGGCTAAAGTGGTTCCCCAGCCAATAGCCCACACCTCGCCCAGGATCCAACCGGAGTACCCTGGAGAGAGGGGCAACCTGATCCCCATCTCAGGCCCCCGCTCCTCCCCCAACCCCATCACCATGGAGGCCCGCAGTGACAACAGgcaacCGGTGCCAGTGCAGTTTCAGTACTTCCTGCCTACCTACCCTTCTTCGTCGTACCCTCTGACACACACCTACACCCCCATCACCAGCTCTGTTTCAACCATCCGACAGTACCCAGTAACCCCTCAGGCCCCCAGCGGCACGGCCATGCAGACCCAGGCCAGTGTGGGCGTAGCGTCGGCGGTGCACCTCAACCCCATGCAGCTGATGACGGTGGACCGTATCGCTCAGATCAACACGCAGAACATCCAGCCCGCCGCCATGGCCACGCAGGGCATCAAGTCAACCAACATCAGCACCCAGGGCCTGCACACTGCCACCGGTCAGATCACTGCGCAAAACATTCAACCTGTGCCCATCAACCAACAGCAGCCAGCCATTGAGAACAAGACCTCAGTTGTGTTAGCAGACGGCTCCACTCTGGTAGCCAACCCCATTGGCCAGACGTTCGGCAGCAGCCAGCCTCCCACCTGCGTTGGGCAGACACACCCCCAGAACACTGGGCCTGGTGCCCCCACCCTGCTGTCCTCCCCCCGGCCTAGCATCCTGCGCAAGAAGCCTGCCAATGAAGGGTCTGCTGTGAGGAAGAACCTGATCCCAGAGGCCACCAGCCCCAGGATAGATGGAGGCATCAGGCCTGCATCAGGTATGAAGCACAAGGCTGATCTCCACGTGTCCCTGGCTCCCCCGTTGACATCGTCCTCCATGGAAGTGCTGCCCAGCCATCAGATCAATGAGCAGCAGCCCTCTCAGCCAATCCAGACCCTCCTCTCAGTGTCTGCACCCCCACACTCCCAGCCTGGCCCTGCCATGTCCGCCATAACTCCACCAATCTCGTCTATGGCCAACGTGGTGGTTCCGCCTACACAGGCAACGGCCAGTAGCACAGCGGCATGTGGAATAAGCTCCACCCTCCCTGAGCTCAAGATAAAGCAGGAAGTGGAGCCTATGGATACCTCCAAAGCAGGTCCCCCTATGCCCCATTGCGGTGCCCCCATGTTGTCTATGATACCTGGTGGGGACGTGATCCTCGGGGCCTCACCCAGGAAGAAGCCCCGGAAGCAGCAGCACATCATCTCCACGGAGGAGAGCGAGATGATGGAGACCAACAGCACAGATGAGGAGAAGGTCCTGGCCAGACCACACAGCATGAGGCCCGAGAAACGCAAGTCGCCCCCCAAGGAGTACATAGATGAGGAGGGTGTTCGTTATGTCCCCACCCGTGCTCGCCCCCCGGTCACCCTCCTCCGCCACTACAGGAACCCCTGGaaggctgcctaccaccacttcCAGAGATACAGTGACATTCGGGTCAAAGAGGAGAAGAAGGGCACCCTGCAGGATGTAGCCAATCAGAAGGGGGTGGTGTGCAGAGCACAGGGCTGGAAGATGCACCTGTGTGCAGCACAGCTCATGCAGCTGACTAGTCTGGAGCATGACGTGTACAGCCGCCTCACTACCCTCCAAGAGGGCCTGATCCCAAAGAAGAAGGCCGGGTCGGATGATGACATGCACCGTATCAACGAGCTCATACAGGGTAACATGCAGCGCTGTAAGCTGGTGATGGACCAGATCACTGAAGCTAGAGATGCCATGATGAAGGTGCTGGACCACAAGGAGAAAGTCATGAAGTTAATCAACAAGAACGGCGGAGCGAAGAAAGTCAACAAGCTGAAGCGCAAGGACAAAGCCTAGAACAGAGGGGGGACCAAGCCTAGGCTGACCCCTGTACCCTTGTCTTTCTAAAGACGGCTCTAGTCTACACCCCTCACTGATATGACCATAGACCACTGgtagatttgagtcagtatggcGTCTGGGGTTACTCGTTAGCTGTGTGCAACCGTCCGACCACGTTTCACCTAGAACTGAGAACCAAGTGGTCGGCAGAAGGAACATATTAGGAACAAACACAGTTCCGCTACGTCCAAGGGAGGAGCTTGTCAATGGACAGGAATGTACAAGTATTAAGCCCATATCAGGAAGTTGGTATGTTCTCAGTTGTTGATTGGATGGCTGGCAGAATTATTATGATTTTGATGGTTGAACGATGGTCTAGAGGGGATGCAGTGTCTGTTCAATTGATACCTTGGAACATTGTGTGATCAATATGGGTTTATTAAACTATCATCAAGTACTTATCGCGTAATAAATGTGTAAAACAGTACAGTGTATTTATCTTTCACTCATGAAAAATCACAAGTATGCTACCAAGTTCAGTCATTGGAAATGTCACTCTACGGTCCAAGTAAAGTGTTGTATATCACAGTATTCAACAGATCTTGGGACAAATATGTGTCAAATACTTGTGTGCTTGGAGTTAGCTGTCTGGTTAACTAAATCGAGCACATCTTAAGTATTTGACCCCAGGCTAAATGAACTCTCTAGTAAAAACAGATTGTAAAAGAAAGTGCAACTGTAATCACTTTTAGAACTTTCACTGAGTGTTACTCTATTTGGGAGTAAAATGTTGAAGGGATGCCTTTTTGTTATGTGCTATCAGTAGCTGACTACACTGTAAACCCAATCAAACTCTTATCGGGACAAAACTTTCTGGGGCTTAAAGCTTGGAATGTTGAACAAGTCTTATTTTGGTTTGTGGGTAAACTGAACGATATTAAAACTGCAGCAGTGTTATTCTTGgcagtctgacatttcaaatgaaGAAATGGCAGAGTAAATTTCCATCACATTATGTGGAACAATATAAGacttgtgcttttttttttttgtaggtgCCTCAGTTGTCAGAGTTAAAGCTTCTTAGTTTTAGGTCCCCATTTTGAAAGCGCTGCCGTTTTTATATAGCATGGCACATTTTAAATCTCCTCAATCATACAGTTGCCTCTGGTGGTTGACTCCATGAGTCTACATTAAAGTCAAGTCGATCTGTTGTCCTCATGGTCACTACGTGTCTATTGCTGTTCTAATTCTAAGTATCTAAGCATGCAAAAAATATATTGCTGGACAGTCAATGAGTGTCTCGTTATAGAGTTATTTGCTGAAGAACACAAATTAACGGGGAATGGATATGTTTTTCAAACCACCGTTAAGAAAAGAGATTGCAGTGCAGTATGCTGCAATTATTGCTCCAAAACAACACAGTagactgcagtttcaaaactgcaatctttttttgtaagggcaATATGAACTGTGAATATATTAGCAAACCCACTCATCAAAAGCGATGCCATTATCTGCACTGCCGACACAATTGTGGGGTATGGTAGTTGATTACATCAAGGTCATCTGTAGCTTCTGAACACAATTCTCAGTGGCAGGAAGGTTCTTCTGTGTGCTTTTTTTAAACGACATCTTGTTGATGCTGTGTAGTATCAACTAAATCAAGTTTCGAGTATAAAATCTGGATTAAAAATGGTATGAAACGAGGTGAAATTGTCTACATAGGCCTATATTGTGCATATGCACACAACGTATCTACATTCTTTTAATGTTTTATGGGTAAAAAATAGTCGATTTTGTTTTTCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2429089 lncRNA downstream 20198 27943375 ~ 27944688 (-) True G2124520
TU2429093 lncRNA downstream 22939 27941117 ~ 27941947 (-) True G2124521
TU2428956 lncRNA downstream 219877 27740633 ~ 27745009 (-) False G2124408
TU2429145 lncRNA upstream 10263 27994399 ~ 27994967 (-) True G2124562
TU2429151 lncRNA upstream 13141 27997277 ~ 27998017 (-) True G2124567
TU2429210 lncRNA upstream 100980 28085116 ~ 28086921 (-) True G2124618
TU2429261 lncRNA upstream 157618 28141754 ~ 28141985 (-) True G2124663
TU2429433 lncRNA upstream 380060 28364196 ~ 28364426 (-) True G2124826
XM_021589685.2 mRNA downstream 27074 27933209 ~ 27937812 (-) True LOC110508837
XM_021589684.2 mRNA downstream 27163 27933209 ~ 27937723 (-) False LOC110508837
XM_021589686.2 mRNA downstream 27176 27933209 ~ 27937710 (-) False LOC110508837
XM_021589683.2 mRNA downstream 34790 27923767 ~ 27930096 (-) True mrpl37
XM_021589679.2 mRNA downstream 40504 27909214 ~ 27924382 (-) True LOC110508834
XM_021589692.2 mRNA upstream 14925 27999061 ~ 28002198 (-) True LOC110508843
XM_036966771.1 mRNA upstream 60714 28044850 ~ 28068458 (-) True LOC118944862
LOC110508200 mRNA upstream 209740 28193876 ~ 28367209 (-) True LOC110508200
XR_005040275.1 mRNA upstream 414369 28398505 ~ 28403893 (-) False LOC110508849
XM_021589702.2 mRNA upstream 479345 28463481 ~ 28506939 (-) True plppr5a
TU2426633 other downstream 1895677 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 2014433 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2690260 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2816366 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 3229899 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 560805 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 560805 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 642919 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 678572 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 708003 28692139 ~ 28692470 (-) True G2125290

Expression Profile