RNA id: TCONS_00055436


Basic Information

Item Value
RNA id TCONS_00055436
length 4160
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_028577
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11732156 ~ 11751037 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACGCTTCACAATCCGCGCAGCCAAGGTAACACACCAAAACTTTGCCCCCCAAATCCCCGGACCCTCAGGGTGGGGTAGAGCCGCGGAGAAGCTGCAGAGCAAACAAAAGCTCTCCTCTTGGCTTTCAGATAAAAACATACCagctgtgaaagaaaaaaaaagtcctgaTACAAACTCAAGACGAAAAGCGGAACCGAGCGGCGGATCCACGTTTCCCATGCTAAACTGTTGCTGAAGAGACTGAACGCGGAGAATCTGAAAATGACCATCACGTGGACAATCATCGTATTAGGTGCCTTCCTACATGACATGGCGTATGCACAGTCTGAAACCACAATACCCACCGCTTCTGAATCACACAGTACCTCGAATAGAAGTGTGGTCACTGATGCAACTGTGTCTACTACGGTGCACAAAGCGACTAATGCACAAACAACTGAAGCACAAACAACATCCATTCCAGCTGGTCCAACAAGCCAAGCCACACATCCTCCCACTTCTGCACCAACTACCCAATCAGATCCTAACAACAACCAGGGCTCAACAGCTTTACCCAGTACATCCACCCTATACATGCAAAATGTCAGTTCTGCTCAAGTAATACCAACTGGAGTTGACCCAAATACTTCATTCAGTCCAACTACCCAATACACACTAACTGATAGTCCTAAATCAGTTACACAACCGCATTCATCAGACCAAGCTTCTACGTCCAATCCAGATAACCTTAATACTCCGACTAGCACTTCTGAACGAACAACACAGCGTGTATCAACTGAACAAACTACTGCATACAGTCCAGCGAAGCAAGACAGGCCTACCATTTCTGACCCAGCCACACCAGCTAACTCTACCACAGAACTCATCACTTCTAAGCCAGACATTACAACAGACAAAAAGACAACAACCGGGACCACAACTCAATTACTCACCACAGCAAAACCAAACGCTAGAAGTTTTGTTTCTCAAAGTCTTCAGACCACAATAGTACCGCAGTCAACAACTGCCCCAATCAAAACATCCCAGCCTTCGGATCTACGCAAAAATTTCACTCATCCTGTCTATGAtctgagcagcagcagcagcagcactgaAAGGAATATCGTGCGTGAAACCTGCAAGAAGCTGGGCCAGAACTTGAAAGGAAATTGCTCTGTGGAAGTGGAAATTAACAACAACCAATTAAttgcaacaataacaataaatgCTAACCAGGCGATACCATTGGAAAATTACAATCCTCCAGAAACAAATgAAAACGAGAACAGCAACAAGGAGCCAGTTCAAGACACGATACCAGACACGCTGATTGCCATCTTGGCTTCATGTGGTGCTTTGGTGCTCATTCTGTGTGGCTTTGCTGCGTACTGCACTTATCATCGTAGATCCTACAGGAAGAACCAGCAACATCTAACAGAAGAGCTGCAGACTGTGGAAAACGGTTATCATGACAATCCCACTCTGGAGGTGATGGAGGTGCAGCCTGAGATGCAAGAGAAGAAACTGGCATTGAATGGAGAGTTTAACGACAGCTGGATCGTCCCAATAGACAACCTTCTGAAAGAGGACATACCTGACGAAGAGGACACTCACTTGTAATGGACCCCGGTGAGCCGTGACGAGTGGGAAACCTGCTGCTGCCTTTACGGTAAATTGTGACCAGCCAGAATGTCAAGAAAAGCAGAGATCGACGTAAAGACTATGACAAGATAGTGGTTTCATTTGGCGCCCACACTGTATATGCTGTAATTAAATAGTTTGATGTCAAGTATGTGCTAGAAAGAGTAGAAAAGCTTTTGAGTTTTGTGTGTCACTGTCTTTGGAAATGATCAATGCACAATCTATGGCCTCTAATTGTGCCTTACTTTTCTTCATCACACGGTGGAGAAACCAGTAGTTTGATACgcatacaaatatatacacagaCGGATGTTGGGGATCAgcctgttttattattttgaacacTTTTGGttcagttattattaatattgaatgaaaaaaaacaggattataattttattgtaatttcactcactatatttgaacattttttgcaacacattttgaGACTTGTGAAGAAATGATGCCATTTTTATCTAAAAACAAGGAAtccgttttattatttttaacaaaacaagtgTTTTTAAAGTGAAAGTTTGTGTCTGAAACAAAGAAACGTGGCTTTGTGTAATTGGTGACGTAAAATAGAAGGACGACAGGACCAAAACATTCAATGCACATTAACTACAGGATCATATTTTAACTAGTGATGTTGccacctactggcctggcatgcataatacagCCTTTTTTTgatacagtggtccctcattatTCACGGGAGTGgagttctaaaaataacccgctATTGGTAAAATCCGCAAAATAGTCTGCTTTATCTTTATCAATAAGTATAGATggtttaaggctgtaaaacccctcactacactatTTTTCCGACAGGCATTTTCAGACTTTTCTCTCGTTTAAACTTCCATCCTCTTTTAGCATGTAGAGAATtccaactttttgtgcgatggttagcatcttcctttgCTTTTTGGGTGCTACCATGGGTGCCTTTGATTATGCAGAATGTTTCGTCAGCAATATGGGGAttgttggggagaaaacttgcaacaTACAgaacagcactttagagtcacactgctagcgatcaaaatttggcaagctgaacgcattctgtactgtacatgtgACACGGCAAGGAGGAGATTGACTggcaatggtctacagccaatcaggacacagaacacattgtACTAAACAGTAAGCAGAGAacaatgcgctgtaaaaaaaaaaaaaaaaagcatgtcaaattacacaaaaaaaacagCGAAACAGCAGACCGCAAAAGGTGAACCGTGTTatggcgagggaccactgtagtTGGAGGATCTTTGTAAATAGggattttttaaaacctttttaaaatgtacagaaaCAAATTACCAGTTTTATGCACAATATTGTCATCTAAAACAGTGTTTCtaaaccacgttcctggaggaccaccagcactgcatgttttggacgtCTCCGATGTCTGTCACACTGATTACAGCTTTCAGTCTCTGATTATGagctgttgatctgaatcaggtgtgtttggttaaggagacatggataatgtgcagagctggtggtcccaCAGgattgtggttgagaaacactgatctaaacaCTCTAAATCTGATGCATTTGTTCTAAAGAAGGCCTCTTGGGAGACATTATGCATTAAAACAGTGTAAAGCACCATCAGGTTCTATTTTTACATGCACATTGCTCTCAGTATTCCTCTTAAGTGTTTTAGCTTGCGGATCACTGGATTCCCATTAAATTATGCTATAGTGGTTGTATCTACCAGAGAACGAAACAcagtttataaatgttttgttattagaAACCTTTCCAGCCATATTTTTAAGACTTGGACATTATATTAATCCAGGACAGTTGGTACCCTGCTTTATTTCTTGACAGGACTGTAACTGCTCTTGTATATAAGAATTATTTTCTATGCGTCTTCCATGTTTTAGCCCTCACTCACAGGCACCAAATTCCACTGAGACCAATGGATAACTCATCCTGGTAAAATTAGACGATAGTTTGAGAGATTGTGGCTTTCTGATTGGCAGATAACCTTTTGCATTATCTTCCCTCAGCGCTACATCTCTGTGCTGGTAGTCATGCTGGTATGAAAATTTACCATCTTGTCAACCTGAAACATTTGACACTAAGTCCAACACACACATTGTGTAGCTTTTCATGTATTAAATCGTGCTGTACTGCCATTTGAACTGGATTTTTGGTTTAAGTACGCTGATCGCCTTTTTCGTTGTATTTAAGTGTTCTAAAGTGGTTTTCACCAAAACATTAAatgttttctattattatttttgttgtatttgcatGCACTACACAAATTGTCAATATAAGGGATTCACTGCTGCCTCCTGATCTACTTCCACCAAAGTATTAAGGTTGAATTGATTGCTGTATTCTGTAATTGAAGTCAGTTTGCTACTGTGTGCAAATGACAGGGGTCTGATACACTGGAAGCCGCATCTCTGTCAGATCAGACGGGGACGGCCATGATttctaatacaaaataaaaaatgtgattttttttttaaa

Function

GO:

id name namespace
GO:0033634 positive regulation of cell-cell adhesion mediated by integrin biological_process
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0022408 negative regulation of cell-cell adhesion biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0016477 cell migration biological_process
GO:0032534 regulation of microvillus assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0042995 cell projection cellular_component
GO:0031528 microvillus membrane cellular_component
GO:0045121 membrane raft cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030027 lamellipodium cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component

KEGG:

id description
ko05132 Salmonella infection

ZFIN:

id description
ZDB-GENE-030131-2805 Acts upstream of or within pronephric glomerulus morphogenesis. Predicted to be located in several cellular components, including filopodium; lamellipodium; and ruffle. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane and microvillus membrane. Is expressed in cardiovascular system; hindbrain neural keel; pronephros; and yolk syncytial layer. Orthologous to human PODXL (podocalyxin like).

Ensembl:

ensembl_id ENSDART00000102301

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058103 lncRNA downstream 39957 11610718 ~ 11692199 (-) True XLOC_028576
TCONS_00058102 lncRNA downstream 40540 11610718 ~ 11691616 (-) False XLOC_028576
TCONS_00058101 lncRNA downstream 41544 11610718 ~ 11690612 (-) False XLOC_028576
TCONS_00055435 lncRNA downstream 94764 11610718 ~ 11637392 (-) False XLOC_028576
TCONS_00055434 lncRNA downstream 94920 11610718 ~ 11637236 (-) False XLOC_028576
TCONS_00058104 lncRNA upstream 2593 11753630 ~ 11754856 (-) True XLOC_028578
TCONS_00058105 lncRNA upstream 3959 11754996 ~ 11758042 (-) True XLOC_028579
TCONS_00058106 lncRNA upstream 7245 11758282 ~ 11768254 (-) False XLOC_028580
TCONS_00055438 lncRNA upstream 7245 11758282 ~ 11768254 (-) False XLOC_028580
TCONS_00058107 lncRNA upstream 7245 11758282 ~ 11780662 (-) False XLOC_028580
TCONS_00055431 mRNA downstream 129007 11577909 ~ 11603149 (-) True XLOC_028573
TCONS_00055428 mRNA downstream 137954 11573568 ~ 11594202 (-) False XLOC_028573
TCONS_00055427 mRNA downstream 151208 11573568 ~ 11580948 (-) False XLOC_028573
TCONS_00055429 mRNA downstream 154903 11574907 ~ 11577253 (-) False XLOC_028573
TCONS_00055424 mRNA downstream 327189 11401121 ~ 11404967 (-) False XLOC_028572
TCONS_00055442 mRNA upstream 53638 11804675 ~ 11810799 (-) False XLOC_028581
TCONS_00055443 mRNA upstream 58100 11809137 ~ 11810365 (-) True XLOC_028581
TCONS_00055444 mRNA upstream 62741 11813778 ~ 12007404 (-) True XLOC_028582
TCONS_00055445 mRNA upstream 282836 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055447 mRNA upstream 283796 12034833 ~ 12040322 (-) True XLOC_028583
TCONS_00055433 other downstream 123873 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 125301 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1070479 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3144248 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3590690 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 524077 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 662382 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 844643 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 1026672 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 1155944 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

//