RNA id: XM_021589746.2


Basic Information

Item Value
RNA id XM_021589746.2
length 2096
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110508874
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29203564 ~ 29220510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTGGTTCCTATTCCTACTTTGAAGCAAAGAGTCTAGGTTTCAACCAAATTCTCACATCTTGTTTAGTGAGAGCTTCTTGAATGAATGACGTATGGACTGTTATGATGACTGAAAAGTCTTGCTTACTGAAGGTGACTGAGAGTCTGTTTGACTCGTCATCACTGTGGCTGAGAGATTTCAATGGTTCCAATTATTATGTCATTTTATGGGtctggttgtttaatttacctttTTGTTATTGCTTGTGACGATATATGATGTTACCAAACGAAACCGCACAATGCCCAAGgCCTCAAAGCGGTGTGAATCTGCAGGTGTGTTTTGTGAATGACAGCAACAGTGACAAGGACAGCGATGCAgaggacagcaggacagagacCAGCCTGGACACGCCGCTGTCACCTGTGAGCAAGCAGAGTTCATCCCTGTCGGACCGGGACACGGGAGAGGAGGACTCAGACCCCCTGGAGGATTGTGGCTTCTGGCGGGTGCAGCGGCGGCTCCAAGAGGAGGCACGGGTGGCCCTGGCGTTGGCTCGCCCTATGGCCCGCAtgcaggtagaggtggagagacagatccagatccaCCGCCGCTCGCCTGTCGCCGACCTGCTGCCCCACCTGCCCCATATCAGCGAGGGTCTGATGAAGAGGAGTCTGAGGAGGGGAGACATGAGGGACATGAGCCTGGGCCAGCTTCAGGTCATCACCAACGATCTGCACTCGCAGATACAGAGCCTGAATGAGGAGCTGGTGCAGCTGCTGCTAATGAGAGATGAGCTCCATGTGGAGCAGGACGCCATGCTGGTGGACATAGAGGACCTGACCAGGCATGCTCAGAGCCTCCAGAGACACATGGCAGAGAAAACCCTCTCCAAATAAAACCCATAGTCACCTGTCCCCATCATCACCTATGTCACATGACAGCCAGAACCAACTCAGAGCAGTGGTcaacaaccctggtcctggagaccAATAAGGCATGCAGGGTTTTGTTCCAGGTCAGCACTTTCACACCTGATTTAACTGATTAATACCTTTAATGACTAGGCAAATGGTTGATTCAGGGTTGTTTTagtgctggaacaaaagcctggaTATGCTTTAACTCTCCAGAACGAGGGTTGTTGTCCACGGCTACAGAGGGACCAAACCCAACCGGGAGTCATACAAAGTCCTGAGTTTTAAGAGTTCAGGCAAAACTCCGGGCCCCAGTCATAAACCATGTGTGGTAGTGACAGTTTGATCACAGAAGATGACTAGGGTTCTGTTTGTTGCCCCGCTCAGCCAGTCGTGGTGCTTTGTAGAATACTAAACACACATAGCTGTTTGTGCTGTTGCTAAGAAATTAGCTCCTAGGCTTCCCAGTGTATAAACATTGTGGCAACTACACAGATCTTGTATGAATAATTTATACACACAAATGGATGTAGTACAGCTGTTGTTGCATAATTCCACCTGTTTAAACATTCTGATGTTTTGAAGCTTTACTGGTTGATCCTTGATTTTgccaaatgtttacagacagattgcaATGACCTTTTGTCTGCACTTTAAATTAAATGGAAGATAAGAGTCCTTTTGGTGTTTTTTGTGGCAGAGTTCAAATAATGGGGGTGCTTAACTAATATTGATACCCATATGTTCAAAATATTAACAGATTTTTAGGGCGCGACCAAAGGTCAGTGTGTAATTCGATCCCTGCTTTGTGACCCAAATGCTACTCCACAGAAAAAACAATTATTTTAAGACAAAATATTATTGACAAAGTCAAATCTCAATGGTTAAGAACTAAAGATGTCTGAGCTGACTGTTCTTGACACTGGTAAAGTGATAGCTGGTCGGTCTGGACTAAATAAAGAACCCGTTGCTGAGCAGGAAAGAGACTTGGATGCCTTGTGGCCTGGCTCAAGATGGCATCTTTGTTCAGTATGATTAGTCCATCTTCAGCAtttagagagtgtcattttccATCagctctttttatttatttattattctcTGTCGTATTATACTAAGGTCCTTCAACCGTATTATGCTGCATTCTGAAAACGTTTTGTGTACAGAGATTAAAATTATGGATAAACGTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2430611 lncRNA downstream 44551 29155229 ~ 29159013 (-) True G2125860
TU2430566 lncRNA downstream 122018 29080571 ~ 29081546 (-) True G2125817
TU2430564 lncRNA downstream 123306 29079529 ~ 29080258 (-) True G2125815
TU2430563 lncRNA downstream 124538 29078750 ~ 29079026 (-) True G2125814
TU2430561 lncRNA downstream 126052 29077146 ~ 29077512 (-) True G2125812
TU2430644 lncRNA upstream 57740 29270785 ~ 29274480 (-) True G2125875
TU2430657 lncRNA upstream 84761 29297806 ~ 29298278 (-) True G2125888
TU2430656 lncRNA upstream 85474 29298519 ~ 29299176 (-) True G2125887
TU2430707 lncRNA upstream 103109 29316154 ~ 29316379 (-) True G2125937
TU2430654 lncRNA upstream 116496 29329541 ~ 29330605 (-) True LOC110508885
XM_021589748.2 mRNA downstream 526 29200588 ~ 29203038 (-) True LOC110508876
XM_021589743.2 mRNA downstream 4383 29194598 ~ 29199181 (-) True LOC110508873
XR_005040227.1 mRNA downstream 62551 29138152 ~ 29141013 (-) True LOC110508284
XR_005040213.1 mRNA downstream 79758 29120384 ~ 29123806 (-) False LOC118944842
XM_021589737.2 mRNA downstream 129819 29045566 ~ 29073745 (-) False LOC110508868
XM_036966624.1 mRNA upstream 15797 29228842 ~ 29232607 (-) False LOC110508877
XM_021589751.2 mRNA upstream 15797 29228842 ~ 29239200 (-) False LOC110508877
XM_021589754.2 mRNA upstream 15797 29228842 ~ 29239200 (-) True LOC110508877
XM_021589758.2 mRNA upstream 51784 29264829 ~ 29269523 (-) True LOC110508879
XM_021589764.2 mRNA upstream 70871 29283916 ~ 29293424 (-) False LOC110508881
TU2430565 other downstream 79822 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 124820 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 317710 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 511094 28692139 ~ 28692470 (-) True G2125290
TU2429926 other downstream 540138 28662708 ~ 28663426 (-) True G2125270
TU2432085 other upstream 1188168 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 1221390 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 1340544 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 1492040 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 2031046 31244091 ~ 31244692 (-) True G2128216

Expression Profile