RNA id: XM_021589751.2


Basic Information

Item Value
RNA id XM_021589751.2
length 2481
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC110508877
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29228842 ~ 29239200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tAGGAGGGGAATTGACTGCAATGCAAAAAAATATTCTATCCGCGAGGGTGGTTTGATCGTAAGAATCTAACCCTGCCATCATTAGCCCACAAAAATATGTTCCGATACTTATGTATATTCATGCTTTTCTCGTTAATTTCCCAATCTGATGTAAAGTTAGGCTCTGAAGAGGAACATATACTTGAGTACATGTACACCTTCTTTAATTCCTCCCACTATGAAGTTGTTGGTTTGTTGGATGGGGAACCAGTGGATTTCTACAGTAGTGTTCTCAAGTCCCCTGTACCTAAAAAGATCTGGAATGAAAAGGAGAGAAGCTTTGGGAATCAGTACTGGCAAGACCATATTACAAGTCGACAGAAGATTGATAAGTGGTTTTTATCCAGTGCTGAAGACCTGAAAATGCACATGACAAAAAATCAAAGCGGTGATGTTGTGCAGATGAGGTTTGGCTGTAAGAACATCCCTGAACGCAACCCTGTTCACGATGAGGAAACCCTGTTTGCTGAGTTTGCCTATGATGGAGAAACAACAATGAACTTCATTCATAACACAAATAAATGGACTCCAGTAGATTTTGCTGCTCAGTTAATTATAAACAATTGGAACAGAAAAAGGAGCATCAAATATCAAATAACCAACTTTCTGAATGTGGAATGTTATCAGGCACTCTATAATTTTCAGAAATTTGAACTCAATGCAACTCAGTACAATAACTCATCTGATCCACTTATCTACACTGTCCCTCGTGGCTCTCTAAAACCTGGGCACAACAACCTGACGTGTCTAGTAACCGGAACCTATCCCAGCTCCTCACCCATCGAGATGAATCTGTTTAGGAATAATGTAAACCTAACAGAGATGGAGGGTGTCCGGTCATCAGGGGTCAGACCTAACGAAGACAATACCTACCAGCTGAGAAAGACAGTGATGATTAATGCCTCCGAGTCTGAAGTGTATCAATGTGTGGTCAATCATAAAAGCTTTCCCGGAACACGGAAAAACACTTGGGAGGTGAAAAAAAGTGAAGAGTCAAGTGGAGGGATCAAATCCAGCTTCTATTGGACTATTGGACTACCGTTTTTTCTACTGGCTGTTTtagtggttgtggttgttgtatGGTTTTTCAAATACAAATGGAGATCTGAGCCTAATAGACATTTGGCTGCTAATCCTGAAGAGAATGCTGCCCTGGGAGTTCAAGATGGAGGGAGTTTGATTGATCAAGGAGGTGAAACCACTTCTGTCGATCTGTCCTCTGAGAGAGAAGATCTTACAAATGCACCCGATGCTGAAGGTGAAAACGATGAAGCCTATGGAAGTCGTGGAAGCTCTGATTCAGACCTGTCACAGATTCAACGAACCTTATTGGAATTCAACACAGACCCAGCTGACAACTAGTACAGGGTCTTAAGTAGGTACTTTGAAACACTCTTATCCGATTGTCAATTTCCAAGTGTTTTACGTGCCAACTGAAGATAACCCAGAGTTTATAATTATGCATTACCTCTGCCTGGGATCAAGTTACCAGAGGTAACTGACTACAAGAGGAGACGCTCAACGCTAACATGGACTGACACAATACAGTAAAGAATACTGAGGAAATAAAGGGCTTGTTAGAGACATTTCCATGTGTCCTGATCGTTGTCTGGCTGTTATCACAGAGCTCATTACTAAGATGGTGATAGATATGTTATGGTGATAGATATTTTACTATGTATTTGTAATGTTTCTGTAAAGACGGCTAGTTacgtcctgtgtggctcagttggtagagcatgacacttgcaacgccagggttgtgggtgataTTCCCACGGGGGAGCATTATGAAGTATGAAAATATATGCACTTTCTTCTGTAAGCCGCTCTTGTCTTGTAAATGTACTCGGAATTACAAGTCATGCTGTAATTGTCCCAAACTTCTTCAACTTGGGGACAGCTCAGGGATCAAGTATCAAAAATAGAAGTTACAATTTTCTACTTTTTCATGTAATGTATTGTTAAGATATTTTATCAAAGTTTAAGATAAATTATTAAATAATTCTACCCAGAAACGTAACCATTAGGATTAGAGGTTATGTAGCATGGACAATAATTGGAAATGATAACCATTGTGGAAGaaggaatgtatgtgtgtgtcgaaAGTAAGCAAAGAGGTTAATGAACCTATGTTTGAACCGACCCAGCTATAACTCTGTGGACATAAAATAAGACAGCGAGAGCTCCTCTGGGTTTTCCGTATCtggggggggggactggaactgtcagctaagtggtaaTAAACTGTGGTGAGACTTTAGGAAATAATCCAGATATAGTGTGTGCGTTAGTGGGTTGGAATGGACTTTTGAAGCTGCTTTGTCGGAGAAGAGGAGGGACATCTAAAAACTATGATGAAATGTGAGGTATATTAAGCAATGTACATGGCATTATGACCAGCGCTCTCGAGAATAAATGCTTTTGGCTAATTTCGgttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2430673 lncRNA downstream 16404 29211946 ~ 29212438 (-) True G2125903
TU2430611 lncRNA downstream 69829 29155229 ~ 29159013 (-) True G2125860
TU2430566 lncRNA downstream 147296 29080571 ~ 29081546 (-) True G2125817
TU2430564 lncRNA downstream 148584 29079529 ~ 29080258 (-) True G2125815
TU2430563 lncRNA downstream 149816 29078750 ~ 29079026 (-) True G2125814
TU2430644 lncRNA upstream 31585 29270785 ~ 29274480 (-) True G2125875
TU2430657 lncRNA upstream 58606 29297806 ~ 29298278 (-) True G2125888
TU2430656 lncRNA upstream 59319 29298519 ~ 29299176 (-) True G2125887
TU2430707 lncRNA upstream 76954 29316154 ~ 29316379 (-) True G2125937
TU2430654 lncRNA upstream 90341 29329541 ~ 29330605 (-) True LOC110508885
XM_021589744.2 mRNA downstream 8332 29203564 ~ 29220510 (-) True LOC110508874
XM_021589746.2 mRNA downstream 15797 29203564 ~ 29213045 (-) False LOC110508874
XM_021589748.2 mRNA downstream 25804 29200588 ~ 29203038 (-) True LOC110508876
XM_021589743.2 mRNA downstream 29661 29194598 ~ 29199181 (-) True LOC110508873
XR_005040227.1 mRNA downstream 87829 29138152 ~ 29141013 (-) True LOC110508284
XM_021589758.2 mRNA upstream 25629 29264829 ~ 29269523 (-) True LOC110508879
XM_021589764.2 mRNA upstream 44716 29283916 ~ 29293424 (-) False LOC110508881
XM_021589762.2 mRNA upstream 44716 29283916 ~ 29293425 (-) True LOC110508881
XM_021589767.2 mRNA upstream 61450 29300650 ~ 29315172 (-) False LOC110508883
XM_036966977.1 mRNA upstream 61450 29300650 ~ 29315173 (-) True LOC110508883
TU2430565 other downstream 105100 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 150098 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 342988 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 536372 28692139 ~ 28692470 (-) True G2125290
TU2429926 other downstream 565416 28662708 ~ 28663426 (-) True G2125270
TU2432085 other upstream 1162013 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 1195235 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 1314389 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 1465885 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 2004891 31244091 ~ 31244692 (-) True G2128216

Expression Profile