RNA id: TCONS_00058115


Basic Information

Item Value
RNA id TCONS_00058115
length 1752
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id XLOC_028580
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11758282 ~ 11803397 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTTCAGGATGTTGACAGTGTGACGTTTGTTTtgatgcagcagcagcagcacgagTGTACAGTTTTAAACACATAAACTGAAGATGACAGCTCAGTGACAGTGTTTTAGTGttaataaacaacatttaatgCAGTCCGACAACTAAAAGAACCACAACACGCTGAGATAAAGGACAGAAATGCAGTGAAAAGCGACTCACCTAGATTGAGGGATGTGTTTGGACCGTACAGTCAACAGAAGCAGAGCTCCGGGACGTTTGGACTACGTTTACTGGCGTGATGGACGTCTTCTGCGGACAGGCAAACGCTCATCCACTGCACCCTTGAGCATGACGTTGTGTTTGGTCCTGCTTTTGAATGAAGAATAGCTGTGGAAATGGGATTCAAAACCAAAGGTTACTGATGTGAAGTAGACTGGAAGTGGCCTTTGGCAGCACCCGCCTACACTCCCCCATTTCCTCCTATAGAAACACCCAGATCGCCCAGCAACTGTTTCTGGGGAAGCTCCTGTTGGCAGCTTCCTGTGCCACTCCCACCCTGTGAACAAACACCCCATTTCTGCTTCTGACTAATGTGcatctgaagaagaaaaaaaaggtcgTTTTCCGCCTCATCTTGCGCTTTCCTTCCTCCGGTGGCCGTCTTTACACTTGACGTTTTGAATGTATGTTGGGTCACAGTGCTCCCTTAAAGTCAGGGTGCAGGCTAATAATAATACAGACCAACTGCATCCTCTTTTTCAGACATTCCCGGGACAGGGGCCATCAAAGGAGACCCAACCCAGCAGCGGAGTCACGCTGTGCTGAAGACGGCTGGTGTGGATCTGCTGGCTCTACAGTAGCATTTAGAGATTATCTACAAGCTATCAGAGAAGAGAAAGATAAACTGCTCTTCTGCAGGTCACAGGTCATTTCTAAATACATACACTCTCATGTTTCGTTGTAGAGATTAAGTGGCTGTTCTTGGTAAACTTTCCTATAGTGTAAAGTTTTGGTACGGTCACTTGCAAACATCACAATTGAAATGGCAAAATTGTCAGCAATAATCTTTGGTTCATTACATAACTCCAGGTACTTTTACATAAACAGCTGAGGGCAAAATTACTGatgcaatatttatttgtttaatcctgtgcaatatttattatttttcaaatatttctcaagtgatatttaatgaattaagaaatttttcacaatatttcctataatatcttttcttctggagaaagttttatttgttttgattttttcagctagaataaaagcaagtattaattaaaaaagtattttaaactcaataatattagcccccttaacccttctattggattgcatttcttaacgtCTTATGTCGCTAATTaaaacactcaatgcatttttttttcaaaacatcccATAAATTCTAAAATATCAATCTCTACCTAAATAGGTGATATGTCGGTTTAtagtaaaagtaccagaattaatgcATATACTATGAAACATCAGACTATATGAAGTGTAagagcagtttatttaaaaacaatcaaaataaaactttttgaatactaaatcatctttttttgatgccataaaatatttcagattctcattgaacattcttttttttttacagtaaaaccaaaatcaagtgtaatagtgcaacagaattatgttTCATGTTTTTGTTAACCAAgagtgctgtgtgtgtaaaccattatttaaaacattaaaaatatagtatcttgtaaaatttgttgtaaaatatta

Function

GO:

id name namespace
GO:0033673 negative regulation of kinase activity biological_process
GO:0071901 negative regulation of protein serine/threonine kinase activity biological_process
GO:0043407 negative regulation of MAP kinase activity biological_process
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0000188 inactivation of MAPK activity biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058105 lncRNA downstream 240 11754996 ~ 11758042 (-) True XLOC_028579
TCONS_00058104 lncRNA downstream 3426 11753630 ~ 11754856 (-) True XLOC_028578
TCONS_00058103 lncRNA downstream 66083 11610718 ~ 11692199 (-) True XLOC_028576
TCONS_00058102 lncRNA downstream 66666 11610718 ~ 11691616 (-) False XLOC_028576
TCONS_00058101 lncRNA downstream 67670 11610718 ~ 11690612 (-) False XLOC_028576
TCONS_00055440 lncRNA upstream 6604 11787351 ~ 11803397 (-) False XLOC_028580
TCONS_00055441 lncRNA upstream 8019 11788766 ~ 11800411 (-) True XLOC_028580
TCONS_00055446 lncRNA upstream 253948 12034695 ~ 12035560 (-) False XLOC_028583
TCONS_00057328 lncRNA upstream 275188 12055935 ~ 12056427 (-) True XLOC_028584
TCONS_00057329 lncRNA upstream 277061 12057808 ~ 12058631 (-) True XLOC_028585
TCONS_00055436 mRNA downstream 7245 11732156 ~ 11751037 (-) False XLOC_028577
TCONS_00055437 mRNA downstream 20343 11734362 ~ 11737939 (-) True XLOC_028577
TCONS_00055431 mRNA downstream 155133 11577909 ~ 11603149 (-) True XLOC_028573
TCONS_00055428 mRNA downstream 164080 11573568 ~ 11594202 (-) False XLOC_028573
TCONS_00055427 mRNA downstream 177334 11573568 ~ 11580948 (-) False XLOC_028573
TCONS_00055442 mRNA upstream 23928 11804675 ~ 11810799 (-) False XLOC_028581
TCONS_00055443 mRNA upstream 28390 11809137 ~ 11810365 (-) True XLOC_028581
TCONS_00055444 mRNA upstream 33031 11813778 ~ 12007404 (-) True XLOC_028582
TCONS_00055445 mRNA upstream 253126 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055447 mRNA upstream 254086 12034833 ~ 12040322 (-) True XLOC_028583
TCONS_00055433 other downstream 149999 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 151427 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1096605 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3170374 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3616816 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 494367 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 632672 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 814933 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 996962 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 1126234 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

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