RNA id: TCONS_00055440


Basic Information

Item Value
RNA id TCONS_00055440
length 738
lncRNA type lincRNA
GC content 0.40
exon number 5
gene id XLOC_028580
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11758282 ~ 11803397 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAGCAActttaaaattgaaaacataaAACAGACTCGTGCTGTTTTTCCTCCGCTCCACTAGGCGGTAGACGCGCGTTCACGGTCACTCAGACGGACAACCTGCAGCTCCTGAACAACAGAAGAGGAATACAGACGACGCCCACTTCATATCATatttgtTAATCTCTGATTCAGCGTTATATCAGAGTCTTCGCCCTCAACTTCCTGGCCTTCTGCTTTTTTATGCAGACTGAAGCAGAGGTCTGGACATGTGGACGGACGTTTGCTGCGGACAGGCGGCAGAAGCGCGTTCACTTTCCCTCAGACCGACAACCTGCAGCTCCTGAACAACAGAAGAGGAGCACAGACGACGCCCACTTCATATACACatttgaGATTCTCTGATTCAGCGTTATATCAGATTCTTCGCCCTCGACTTCCTGGCCTTCTGGTTTTTTAGACACACCGGTAAGTTAATCATTCACCACGAGTATTTTTACACCTTTATCTAGAAAATATACAGTATTGGTTGGGAAAAGTTAaacatttagatttgtttttgaaagaagtctcttctgctcaccatggctgcatttatttaatcatttattttataagtaatattataaaatattgtttcgatttaaaataacagtttattcTAAAATAATGGTTAACCGTAATATTAAATGCAATTTATTCATGTCATTCAATTTGTGATTTTTCGAGAAAGGTCTGACTCTTAGACGTGCATGCT

Function

GO:

id name namespace
GO:0033673 negative regulation of kinase activity biological_process
GO:0071901 negative regulation of protein serine/threonine kinase activity biological_process
GO:0043407 negative regulation of MAP kinase activity biological_process
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0000188 inactivation of MAPK activity biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194324

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058116 lncRNA downstream 6604 11758282 ~ 11780747 (-) False XLOC_028580
TCONS_00058115 lncRNA downstream 6604 11758282 ~ 11780747 (-) False XLOC_028580
TCONS_00058113 lncRNA downstream 6604 11758282 ~ 11780747 (-) False XLOC_028580
TCONS_00058112 lncRNA downstream 6604 11758282 ~ 11780747 (-) False XLOC_028580
TCONS_00058114 lncRNA downstream 6604 11758282 ~ 11780747 (-) False XLOC_028580
TCONS_00055446 lncRNA upstream 231298 12034695 ~ 12035560 (-) False XLOC_028583
TCONS_00057328 lncRNA upstream 252538 12055935 ~ 12056427 (-) True XLOC_028584
TCONS_00057329 lncRNA upstream 254411 12057808 ~ 12058631 (-) True XLOC_028585
TCONS_00058119 lncRNA upstream 256587 12059984 ~ 12061389 (-) False XLOC_028586
TCONS_00057330 lncRNA upstream 256796 12060193 ~ 12060718 (-) True XLOC_028586
TCONS_00055436 mRNA downstream 36314 11732156 ~ 11751037 (-) False XLOC_028577
TCONS_00055437 mRNA downstream 49412 11734362 ~ 11737939 (-) True XLOC_028577
TCONS_00055431 mRNA downstream 184202 11577909 ~ 11603149 (-) True XLOC_028573
TCONS_00055428 mRNA downstream 193149 11573568 ~ 11594202 (-) False XLOC_028573
TCONS_00055427 mRNA downstream 206403 11573568 ~ 11580948 (-) False XLOC_028573
TCONS_00055442 mRNA upstream 1278 11804675 ~ 11810799 (-) False XLOC_028581
TCONS_00055443 mRNA upstream 5740 11809137 ~ 11810365 (-) True XLOC_028581
TCONS_00055444 mRNA upstream 10381 11813778 ~ 12007404 (-) True XLOC_028582
TCONS_00055445 mRNA upstream 230476 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055447 mRNA upstream 231436 12034833 ~ 12040322 (-) True XLOC_028583
TCONS_00055433 other downstream 179068 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 180496 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1125674 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3199443 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3645885 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 471717 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 610022 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 792283 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 974312 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 1103584 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

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