RNA id: XM_021589843.2


Basic Information

Item Value
RNA id XM_021589843.2
length 1071
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110508928
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30705085 ~ 30706591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCGATTGGATGAAAAACGAGAGCCAATCGTAGCTCTGAATGGAACGAGGGTGCTTAGCAAATACCCCAGTGGCCTAGCTAGCTATCCTAGTCAGCGATAAAGCCGTCTAAAATATTGTCTAAAATGAATATTATCAGGTCGTCATTTTTCCGGTTTCATGGAGTGATATGCTTCACCAGGATTGTTGCACCACAGCTTCCAGCATCCAGTGGCCACCAGCCACGAGCACTGAGTGGTTGGGTGCTGTCCCGGGCCAGTTTACCTCCCCAGACCTCTCGGTGTGGACCTCTCACATCACAGGCAGAGGGGGCAGGGGTGTTTCAGCAACTCCCCTGGTACCACCAGCAGATTCGCACAGGGAAGCGGGGCACAGAGTATCAGCCCAAGAATATAAAGCGTAAGAGGACCCATGGCTGGATCAAGAGGATCAGCACTCAGGGTGGCATCGAGGTGATTCTCCGAAGAATGCTGAAAGGGCGAAAATCCCTGTCACACTAAGCACCCAATGGACAAACGTTTTTTGGTGAACTTATTGAAGTACCCAGGTTTTGCCACCACTGTTGAGAAAAAGCATAACAACTTCAAGACTTACTGGCCCAGTTGTGTGTAGAACTGAATGTCAGTTATTGGATATGCGAAGGCAGATGTTTGtccatgtaaatatatatatatattttacacacTTTGACAAATGTTTTCCCATCATGTATTTCAGCAACTATCTTGTAGAGGCTTAGAAGTAGTTCAGAGCCTTGCTGTTGCAATCAGTGAATTTGAAATGGCTTATGACCTTGTTAATTCATGCAGGATGAAAGTTGTGATAAAAGACCCAAAGTTGTACATGTCAACATACAGTGGTAGGGTTGAACTAGGTCCAGAATTTGAATATTGTACTTTAATAAATAGGTGCTGGGTTATAAGCATCTGTGCTATTCAGTTGCTGCTATAGATATAGATAGACCTTCTGACCTTCATCAATTTTAAAGCTAATACACGTGTCATTCAAGTCTTTGTCTTGCTCAAATAAAAGCTGTCTTGAGTTTCTGAATAAATAAACTTTGTAAAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2432522 lncRNA downstream 368 30700557 ~ 30704717 (-) True LOC110508927
TU2432502 lncRNA downstream 33894 30670828 ~ 30671191 (-) True G2127510
TU2432500 lncRNA downstream 35952 30668813 ~ 30669133 (-) True G2127508
TU2432499 lncRNA downstream 37096 30667723 ~ 30667989 (-) True G2127507
TU2432491 lncRNA downstream 43345 30658507 ~ 30661740 (-) False G2127503
TU2432541 lncRNA upstream 17541 30724132 ~ 30724541 (-) True G2127542
TU2432557 lncRNA upstream 42357 30748948 ~ 30756441 (-) True G2127557
TU2432570 lncRNA upstream 82443 30789034 ~ 30804432 (-) False G2127570
TU2432571 lncRNA upstream 82443 30789034 ~ 30795981 (-) True G2127570
TU2432585 lncRNA upstream 107642 30814233 ~ 30814734 (-) True G2127584
XM_021589842.2 mRNA downstream 308 30700542 ~ 30704777 (-) False LOC110508927
XM_036967076.1 mRNA downstream 55250 30629942 ~ 30649835 (-) False LOC110508217
XM_036967077.1 mRNA downstream 55250 30629942 ~ 30649835 (-) False LOC110508217
XM_021589831.2 mRNA downstream 257637 30442013 ~ 30447448 (-) False LOC110508919
XM_021589830.2 mRNA downstream 288441 30409271 ~ 30416644 (-) True angptl4
XM_021589856.2 mRNA upstream 199288 30905879 ~ 30907975 (-) True ptger4c
XM_021589860.2 mRNA upstream 272128 30978719 ~ 30980452 (-) False LOC110508937
XM_036966461.1 mRNA upstream 272392 30978983 ~ 30980313 (-) True LOC110508937
XM_021589861.2 mRNA upstream 288504 30995095 ~ 31004289 (-) True LOC110508938
XM_021589863.2 mRNA upstream 377724 31084315 ~ 31136167 (-) True LOC110508940
TU2432439 other downstream 149898 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 270231 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 303278 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1581343 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1626341 29078039 ~ 29078744 (-) True G2125813
TU2433286 other upstream 537500 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 612692 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 612750 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 612750 31319341 ~ 31323364 (-) True G2128242
TU2433533 other upstream 1005017 31711608 ~ 31737492 (-) True LOC110508968

Expression Profile