RNA id: TCONS_00055441



Basic Information


Item Value
RNA id TCONS_00055441
length 999
lncRNA type lincRNA
GC content 0.37
exon number 3
gene id XLOC_028580
representative True

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11758282 ~ 11803397 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GCAGCCTCTAGGTTTTTGTTGTGTAGCATTTGCTtataatgtgtgtttgtttgttttgtagatttgtTAATCTCTGATTCAGCGTTATATCAGAGTCTTCGCCCTCAACTTCCTGGCCTTCTGCTTTTTTATGCAGACTGAAGCAGAGGTCTGGACATGTGGACGGACGTTTGCTGCGGACAGGCGGCAGAAGCGCGTTCACTTTCCCTCAGACCGACAACCTGCAGCTCCTGAACAACAGAAGAGGAGCACAGACGACGCCCACTTCATATACACGTGAGTCGCTGAATGAAAACAAACTGTAAACTGCTTTATTTACACACACCATGTTTACTAAACACCCGTATTCGTTTGGATAATATATAGCCAACAAATGAGGTAATAAAATATGGCGACGTTGTTGTGTATAATGTGTGTAAAAACAATGGCTTCTCACTTTGAGTTTCTGGAAATGTTTACTAAAGGCTTCGAGTGAACATGACAACATTTGTAGTTACTGTTTCACAGAATCTACAAACTAAACACAGTAGCCATGGCAAAAGAAATGTGACCTGCAAAACATTCATGAAATTGTAAAGCTTTATAAATCACTATCATACAGAAGTGGTTAAAATATTAAGCTGCTGTTTGTGTTTGCaagttatttttttcattgtacACGTCTGTCTACCAAATAAAGCACAGAAAGGACTATAGTTTAATccatttgttgtttaaataaacaTGATGTTATGAGtgttcatagatatatacatgagTGTTTATGTGCTGTCAAACAATTTGATTGACTGTTGAATCTGACCAATAAGGGTGGACATCTGTAATGCATCTCCCAACTCATTGGTTGTTGCACACAAGGGGCGGGGCTTACTAAAACAGTAGAACCAATAGCAATGcagagaaaagaaacaaaaacctCTGATActtataaaaatatgtttttaaacgTGAAAAGTGCAAATTagatataaaaatacaaacaaacaaataataaacaaa

Function


GO:

id name namespace
GO:0033673 negative regulation of kinase activity biological_process
GO:0071901 negative regulation of protein serine/threonine kinase activity biological_process
GO:0043407 negative regulation of MAP kinase activity biological_process
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0000188 inactivation of MAPK activity biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194582

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00058113 lncRNA downstream 8019 11758282 ~ 11780747 (-) False XLOC_028580
TCONS_00055446 lncRNA upstream 234284 12034695 ~ 12035560 (-) False XLOC_028583
TCONS_00057328 lncRNA upstream 255524 12055935 ~ 12056427 (-) True XLOC_028584
TCONS_00057329 lncRNA upstream 257397 12057808 ~ 12058631 (-) True XLOC_028585
TCONS_00058119 lncRNA upstream 259573 12059984 ~ 12061389 (-) False XLOC_028586
TCONS_00057330 lncRNA upstream 259782 12060193 ~ 12060718 (-) True XLOC_028586
TCONS_00055436 mRNA downstream 37729 11732156 ~ 11751037 (-) False XLOC_028577
TCONS_00055437 mRNA downstream 50827 11734362 ~ 11737939 (-) True XLOC_028577
TCONS_00055431 mRNA downstream 185617 11577909 ~ 11603149 (-) True XLOC_028573
TCONS_00055428 mRNA downstream 194564 11573568 ~ 11594202 (-) False XLOC_028573
TCONS_00055427 mRNA downstream 207818 11573568 ~ 11580948 (-) False XLOC_028573
TCONS_00055442 mRNA upstream 4264 11804675 ~ 11810799 (-) False XLOC_028581
TCONS_00055443 mRNA upstream 8726 11809137 ~ 11810365 (-) True XLOC_028581
TCONS_00055444 mRNA upstream 13367 11813778 ~ 12007404 (-) True XLOC_028582
TCONS_00055445 mRNA upstream 233462 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055447 mRNA upstream 234422 12034833 ~ 12040322 (-) True XLOC_028583
TCONS_00055433 other downstream 180483 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 181911 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1127089 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3200858 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3647300 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 474703 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 613008 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 795269 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 977298 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 1106570 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile


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