RNA id: XM_036966574.1


Basic Information

Item Value
RNA id XM_036966574.1
length 3026
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC110508942
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31173927 ~ 31214079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTATTCGCGTCCACATCTGTTTCTGCTCACTTAGCACCCATTGTCTCATTTTCTATTACACATCTGTCAAACCagctgtCATGGTGTCACACAAGGAGTTTGTGACTGCAGGGAAGGAGAAAGGGCTGCAGGTGTGGCGTATTGAGAACATGGACCTGAAGCCTGTCCCCAAGGCCCTGCACGGCAACTTCTACACAGGAGATGCCTATCTGCTCCTCTACACAACTGCAGCTCCCTCCTACTACATACACATGTGGATGGgggaTGAGTGTTCTCAGGATGAGAGAGGAGCGGCGGCCATCTTTGCCACCCAGCTGGATGACTTCCTGGGCGGAGGGCCGGTCCAGTTCAGAGAGGTCCAGAACAACGAGTCCATCACCTTCTTGGGCTACTTTAAGTCTGGCATCAAGTACAAGCAAGGGGGCGTGGCTTCAGGCTTCCAGCACGTTGTGACCAATGACATGAGCGTGAAGCGCTTGTTGCACATCAAGGGGAGGCGGACCATCCGGGCCACGGAGGTGGTACTGTCCTGGGCCAGCTTCAACCAGGGAGACTGCTTTATCGTGGACCTGGGCAAGGATATCTACCAGTGGTGTGGCAGTGAGAGTAACCGCTTCGAGAGACTGAAGGCCTCCCAGGTGGCCATCGACATCAGGGACAACGAGAGGAACGGCAGGGCCAAGCTCCACATGGTGGAGGATGGTGCTGAGCCACAGGAACTCACTGAGGCTCTGGGGCCCAAACCCAGTATCCCCCCTGGCACCCCTGATGATGAGAAGGTGGACACCTCCAACAGGAAGAAGGGTGCCCTCTACATGATCTCCGATGCCTCTGGCTCTATGAAGTCGTCGGTGGTGGCCTCGTCCAGCCCCTTCAAACAGGCCATGCTGACCGCCGAGGAGTGCTACATCCTGGACAACGGAGTGGACAAGAACGTCTTCGTATGGAAAGGACCCAAGGCCAATGCAGCCGAGCGCAAAGCAGCCATGTCAGCAGCCCAGCAGTTCATCAAAGAGAAGGGCTACTCCGACAAGACACAGATCCAGGTACTACCAGCAGGAGGCGAGACCACTCTGTTCAAGCAGTTCTTCAGGGACTGGAAGGACAAGGACCAGACCACGGGCCCCAGTAAGGCCTACACCATCGGCCGCATCGCCAAGGTGGAGCAAGTGCCCTTCGACGCCTCCACCCTCCACTCCAACAACAACATGGCCGCCCAGCACAACATGGTGGACGACGGCAAGGGCAAAGTCCAGATCTGGCGTGTTGAGGATGGTGATAAAGTGGCTGTGGATCCCTCCTCTTATGGCCAGTTCTACGGAGGAGACTGTTACCTCATCCTCTACAGCTACAGGCTGGGAGGCAGGGAGCAGCACATCATCTACACCTGGCAGGGGCTGAAGTGCACCCAGGATGAGCTGGCAGCCTCTGCCTTCCTCACGGTGAAGCTGGATGACTCTATGGGAGGAGCCCCTGTTCAGGTGCGTGTGACCCAGGGTCAGGAACCCCCCCACCTGATGAGCCTGTTCCAGGGCAAGCCCATGATGGTCCATAATGGAGGGACGTCCCGTAAAGGAGGACAGTCGGGTACTGGCAGCACCCGCCTCTTCCACATTCGTCAATCCTCCACCCGCGCTACACGAGCTGTAGAGgtagaGCCCTCTGCCTCCTTCCTGAACACCAATGACGTGTTTGTGCTCAAATCTCCCACCGCCATGTTtgtgtggagaggggtgggtgCCAGTGAGGAGGAAATGGCCGCCGCCAAGCACGTTGTGGGTTTCCTGGGTGGCAGTGGCAGTAATGTGTCTGAGGGCAAGGAGCCAGCTGGGTTCTGGTCTGCCCTGGGAGGGAAGAAGGAGTACCAGACTTCCAAGAGTTTGCAGAACATGGTCAAACCTCCACGCCTGTTTGGCTGCTCCAACAAGACCGGATGCCTCAGTGTGGAAGAGGTTCCTGGAGACTTCCAACAGACTGACCTGGCCACTGATGATGTCATGTTGCTGGACACCTGGGACCAGATCTTCCTCTGGATCGGCAATGAAGCAAATGCAGAAGAGAGAACTGGAGCACCCAAAATAGctaAGGACTATGTGGACTCAGACCCTTCTGGACGCAGAGGACTGTCCATCACCACCATCAAACAGGGGGCTGAACCCCCAACCTTCACTGGCTGGTTCCAGGCGTGGGACCCCAAAATGTGGGAAACAGACCCTCTGAAGATAATCCATGCCCGCTTCTAAATGCCAAACTCCACCCCCTTACCTATCTGGCACTTACACATACGCATGTCATTCCCCCGCCCCGCTCTTTGGATCAGAGTACCAGTATAACACCCTGGACTGCTATTTTAATTAGACTTGTTTTTATGCCATAACGTTGTCTCTTTTATACTCATACGAAACATTCACCTAGCATGCCTTTTTTTATCTGCTGTTGGAGCAGAGAAAAACCTTCTCTTTTGGAGCCTGTTTATTCCAGTAGTCTATTGAATCCAACGGGTATTTTGTTATACTTTGTGAAGTCATgatatgtgattaccattgagaCTTAGGTCTCATTTGAAAGCATGCTGCATTTTAACAGGATATCTCTGCCGGAGAAAAATGTCtgctcttcttctttttttttttttttacattacttTCGATGATTCTGAAATGGTATTATGGATGGCTTTTTCAATTAAATTCCTAGTATTTCTAGAGAAACTCTAGAAATGAGAACACGTTGGTAGCCTATATTTTCTATGTTGACAGGTGGATAGGAACGACAGCAGACCAAGGTATCATACGTTTAACATCAGCACAACCTCTTCCATGTAACATTTAATCTTTCGTCTGAAGTTAGTCAAATAGTGGAAAAAACTGAGAACAGACAGCCACAGTACTTCAACAACGGAAGACTCCCTCAAGAGGATGTTATCTTTTTACACACCACCTGGCTAGGCGGAGTTGTCTTCCTTCTTCCCACCTTTAGATCTACAGTGGCAGTCAATGATtaatataaaccctggattgctaa

Function

GO: NA

KEGG:

id description
K05768 GSN; gelsolin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2432830 lncRNA downstream 37836 30995158 ~ 31136091 (-) False G2127817
TU2432829 lncRNA downstream 37836 31084190 ~ 31136091 (-) True G2127817
TU2432678 lncRNA downstream 187813 30985073 ~ 30986114 (-) True G2127673
TU2432641 lncRNA downstream 242461 30924247 ~ 30931466 (-) True G2127637
TU2432617 lncRNA downstream 289142 30884465 ~ 30884785 (-) True G2127615
TU2433259 lncRNA upstream 4983 31219062 ~ 31219909 (-) True G2128197
TU2433285 lncRNA upstream 28088 31242167 ~ 31242441 (-) True G2128215
TU2433262 lncRNA upstream 31043 31245122 ~ 31281683 (-) False G2128200
TU2433265 lncRNA upstream 31043 31245122 ~ 31283855 (-) True G2128200
TU2433267 lncRNA upstream 32196 31246275 ~ 31286088 (-) True LOC110508945
XM_036966586.1 mRNA downstream 4633 31138086 ~ 31169294 (-) True LOC110508941
XM_021589863.2 mRNA downstream 37760 31084315 ~ 31136167 (-) True LOC110508940
XM_021589861.2 mRNA downstream 169638 30995095 ~ 31004289 (-) True LOC110508938
XM_021589860.2 mRNA downstream 193475 30978719 ~ 30980452 (-) False LOC110508937
XM_036966461.1 mRNA downstream 193614 30978983 ~ 30980313 (-) True LOC110508937
XM_036965889.1 mRNA upstream 39854 31253933 ~ 31254937 (-) True LOC118944807
XM_021589866.2 mRNA upstream 44990 31259069 ~ 31280002 (-) False LOC110508943
XM_021589871.2 mRNA upstream 71067 31285146 ~ 31304046 (-) False LOC110508945
XM_021589867.2 mRNA upstream 71067 31285146 ~ 31305210 (-) False LOC110508945
XM_021589869.2 mRNA upstream 71067 31285146 ~ 31305211 (-) False LOC110508945
TU2432521 other downstream 467382 30705085 ~ 30706545 (-) True LOC110508928
TU2432439 other downstream 618740 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 739073 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 772120 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 2050185 29118684 ~ 29123742 (-) True LOC118944842
TU2433286 other upstream 30012 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 105204 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 105262 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 105262 31319341 ~ 31323364 (-) True G2128242
TU2433533 other upstream 497529 31711608 ~ 31737492 (-) True LOC110508968

Expression Profile