RNA id: XM_036965889.1


Basic Information

Item Value
RNA id XM_036965889.1
length 803
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC118944807
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31253933 ~ 31254937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTGTGCTCAGGGTGGAGTTTAACAGCGGAGAATAGAGGAGCACTTTAGGACATTGCTTCTTCTATGTAGTCTATACAGGGGATGGAAGATGCTTCTAACACTTGTCAGTTAGTACTTAAGTTACTCAGTATTCTAGTTTTAAGTTACTCAGTATTCTAGTTTTAAGTTACTCAGTTAGTACTTTAATTTGGTCCCAGGTCCTACAGATCCTGAGTTTTTTGCGGGTAGTGCAGTAGCATTATGGGGGCACGGTTGTGCACTGTTAGGTGGACGCCAGATGGAGAGTGTCTAGAATGTGTGTGAGTTCCCGGTGTGATCTCTGCATGTCTGTGACAgtgtatttgatttgatctgtgtgAGGATATGCCTACTAACGTGTGTGTATTCCAGTCAGCTGTCGTCTGAGATAAATACGTGTCGTGGGGAGCTGTCATCCATGGAGCAGGAGCTGCAGAGGCTGCGGAGAGACACCAGTATGAATTCCTCCCAGCTCAGCTACGTGGAGGAGACCCTGCAGAAGACCCAGGGCCTACTGGAGGAGAAGAACAACACGGTTGTGGACTTGGAGGAGAAGCTCCACTGCTGTGAGGAGGACAGGCGGACCTCTGTGCAGCATGTGAAGGATCTGGAGGGACAGCTACAGGAGGTGCGCGATGAGATGCACGACACCCTAGAGAAACTACAGGAGCTGAGAGACCTGTTACAGGCCTCGCAGCTTGGCGCAGATGAACGACAGATTTCATTGGAGAAACTGTCCGCCGAGCTCAGGTGAGCCTCTCTGCCAACCGcccgacacacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433285 lncRNA downstream 11492 31242167 ~ 31242441 (-) True G2128215
TU2433259 lncRNA downstream 34024 31219062 ~ 31219909 (-) True G2128197
TU2432830 lncRNA downstream 117842 30995158 ~ 31136091 (-) False G2127817
TU2432829 lncRNA downstream 117842 31084190 ~ 31136091 (-) True G2127817
TU2432678 lncRNA downstream 267819 30985073 ~ 30986114 (-) True G2127673
TU2433273 lncRNA upstream 17658 31272595 ~ 31274022 (-) True LOC110508943
TU2433297 lncRNA upstream 87052 31341989 ~ 31342117 (-) False LOC118944817
TU2433296 lncRNA upstream 87296 31342233 ~ 31342593 (-) True LOC118944817
TU2433338 lncRNA upstream 116652 31371589 ~ 31371788 (-) True G2128266
TU2433342 lncRNA upstream 126820 31381757 ~ 31381985 (-) False LOC110508218
XM_036966574.1 mRNA downstream 39854 31173927 ~ 31214079 (-) True LOC110508942
XM_036966586.1 mRNA downstream 84639 31138086 ~ 31169294 (-) True LOC110508941
XM_021589863.2 mRNA downstream 117766 31084315 ~ 31136167 (-) True LOC110508940
XM_021589861.2 mRNA downstream 249644 30995095 ~ 31004289 (-) True LOC110508938
XM_021589860.2 mRNA downstream 273481 30978719 ~ 30980452 (-) False LOC110508937
XM_021589866.2 mRNA upstream 4132 31259069 ~ 31280002 (-) False LOC110508943
XM_021589871.2 mRNA upstream 30209 31285146 ~ 31304046 (-) False LOC110508945
XM_021589867.2 mRNA upstream 30209 31285146 ~ 31305210 (-) False LOC110508945
XM_021589869.2 mRNA upstream 30209 31285146 ~ 31305211 (-) False LOC110508945
XM_036966529.1 mRNA upstream 30209 31285146 ~ 31305211 (-) False LOC110508945
TU2433286 other downstream 9241 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 547388 30705085 ~ 30706545 (-) True LOC110508928
TU2432439 other downstream 698746 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 819079 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 852126 30401213 ~ 30401807 (-) True LOC110508917
TU2433314 other upstream 64346 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 64404 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 64404 31319341 ~ 31323364 (-) True G2128242
TU2433533 other upstream 456671 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 627778 31882715 ~ 31883140 (-) True G2128568

Expression Profile