RNA id: TCONS_00055443


Basic Information

Item Value
RNA id TCONS_00055443
length 537
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_028581
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11804675 ~ 11810799 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGTGTGTTGTTGTAGCTCATCACTGGTAGCTGTCAATTCGTGCTTGATTTTCTCCGAAGACTCTTTGGTTTTAAGTCGAGACCAGCCATCACCCTTGAAGATCCCGATGTAAAATACCCATTGCGTCTTGTTGACAAAGAGATTATAAGCCATGACACAAGAAGATTTCGATTTGCTTTAAAATCACCCGATCATGTTCTTGGACTTCCTATTGgtcAACACATCTACTTGTCTGCCAAAATTGATGGCAACCTTGTGGTGAGGCCTTACACGCCGGTGTCTAGTGATGATGATAAGGGCTTCGTGGATCTAGTTGTCAAGATATACTACAAAAATATCCATCCAAAGTTTCCAGACGGAGGCAAGATGTCCCAATACTTGGAGAGCCTTCGCATTGGTGACACAATTGATTTCAGGGGACCAAGTGGACTGCTGGTTTACAAAGGCAAAGGATCGTTTGCAATCAGGCCAGATAAGAAATCAGACGCTGTGATAAAAACTGCTAAACATGTTGGCATGATTGCTGGGGGAACAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0071949 FAD binding molecular_function
GO:0004128 cytochrome-b5 reductase activity, acting on NAD(P)H molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3281 Enables NADH dehydrogenase activity. Is expressed in yolk syncytial layer. Human ortholog(s) of this gene implicated in breast cancer and methemoglobinemia. Orthologous to human CYB5R3 (cytochrome b5 reductase 3).

Ensembl:

ensembl_id ENSDART00000150529

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055440 lncRNA downstream 5740 11787351 ~ 11803397 (-) False XLOC_028580
TCONS_00055441 lncRNA downstream 8726 11788766 ~ 11800411 (-) True XLOC_028580
TCONS_00058118 lncRNA downstream 19556 11758282 ~ 11789581 (-) False XLOC_028580
TCONS_00058117 lncRNA downstream 19556 11758282 ~ 11789581 (-) False XLOC_028580
TCONS_00058111 lncRNA downstream 28390 11758282 ~ 11780747 (-) False XLOC_028580
TCONS_00055446 lncRNA upstream 224330 12034695 ~ 12035560 (-) False XLOC_028583
TCONS_00057328 lncRNA upstream 245570 12055935 ~ 12056427 (-) True XLOC_028584
TCONS_00057329 lncRNA upstream 247443 12057808 ~ 12058631 (-) True XLOC_028585
TCONS_00058119 lncRNA upstream 249619 12059984 ~ 12061389 (-) False XLOC_028586
TCONS_00057330 lncRNA upstream 249828 12060193 ~ 12060718 (-) True XLOC_028586
TCONS_00055436 mRNA downstream 58100 11732156 ~ 11751037 (-) False XLOC_028577
TCONS_00055437 mRNA downstream 71198 11734362 ~ 11737939 (-) True XLOC_028577
TCONS_00055431 mRNA downstream 205988 11577909 ~ 11603149 (-) True XLOC_028573
TCONS_00055428 mRNA downstream 214935 11573568 ~ 11594202 (-) False XLOC_028573
TCONS_00055427 mRNA downstream 228189 11573568 ~ 11580948 (-) False XLOC_028573
TCONS_00055444 mRNA upstream 3413 11813778 ~ 12007404 (-) True XLOC_028582
TCONS_00055445 mRNA upstream 223508 12033873 ~ 12040345 (-) False XLOC_028583
TCONS_00055447 mRNA upstream 224468 12034833 ~ 12040322 (-) True XLOC_028583
TCONS_00055448 mRNA upstream 264411 12074776 ~ 12102025 (-) False XLOC_028587
TCONS_00055449 mRNA upstream 264675 12075040 ~ 12102036 (-) False XLOC_028587
TCONS_00055433 other downstream 200854 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 202282 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1147460 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3221229 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3667671 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 464749 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 603054 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 785315 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 967344 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 1096616 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

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