RNA id: XM_021589879.2


Basic Information

Item Value
RNA id XM_021589879.2
length 2085
RNA type mRNA
GC content 0.51
exon number 11
gene id cdc7
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31361711 ~ 31369517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtttaaaacatttacgagaaaagctttttgtgcgtatggaaaagttctggaatcttttattttagctcatgcaacatgggaccagcactttacatgttgtgttatttttgttcagtgtacattctCCAAACTAGAAGCTAGCTAGTTGAGCTTGTAGCTAGTTGATCAGATCCACAGTCCACAGAACAAATGGAAGTCATTCCCTCTGTCTGCGATGACAGCAACAGCACAGAAAGTCACGTCAAAGCCGACAAGCACATTAGAAGGAGAAAACTATCAATGGATGTGGAGAATGACATTGAGTACCTCTACGAAGCTGTTCCTCAGCTGTCCACAGTTTTCCACATTTTAGACAAAATTGGGGAAGGTACTTTCAGTTCAGTGTACCTGGGCGAGGCTCTGATGGCCAATGGGACGAAAGAGAAATTTGCCCTGAAGCACCTCATCCCCACCAGTCACCCTGTGAGGATCGCTGCAGAGCTCCAGTGCCTCACTGTGGCTGGTGGAAAAGAAAACGTCATGGGCGTGACCTACTGCTTCAGAAAGGATGATCACTGTGTGATTGTTATGCCTTATATGGAGCATCAAACCTTTGTGGATATCATTGGCCTGCTGAGTTTCGAGGAGGTGCGTCAGTATATCTACCACCTGCTGAAAGCTCTCCGACATGTCCATCAGTTTGGCATCATCCACCGTGACATCAAGCCCACCAACTTCCTTTACAACCGGCAGGAGAAGATGTTTGCCCTGGTGGACTTTGGGCTGGCACAGGGCACAACCGACACCCAGATCGAGCTGTTGAAGGTGGTGAAGCAGAAGACCCAAAAGTGTGGGGGCTCCACGGGGAAACCGGAGACATCACAGGGGAAACGGGCACCAACCTCCCTAGCCCCACCTCTACAATCACTTTCACACCCCAGGACCTCAGCACCtcactcttcctcctccacctcttcttccaCTTCCTCAAAACCACCAGATAAGAGGGTCTCGGTCTCCACATTTTCCTCCACCACCCGCTCTAAACACACCAAGgagTTCTCAGGTCTGTGTAAAACACCGCGGGCCGTATTTGGAGAGAGGAACCTGAATAGCTTTACCTCCGTCCCCACCAAAACCACTGACCCCAAGTTAGAGCTGGTGAAGCCCACTAAAACAGAGGACCCTGCCACACGCAAGTTTATCTCTGCCCACCGGCGCCCAGTACCTGTCAGGACCCCTGTCAGCAACCAGAGACCCAACCAGAGGATGACCCCTGCTGCGGTCAACCTGGGCTTCACCTGCAGCTGCTACTCCACCGACAGAGTCTGTAACATCTGTATGTCTAGGAAACAGCAGGTGGCTCCCAGGGCCGGAACCCCTGGCTTCAGAGCACCAGAGGTCCTGACCAAGTGTCCCAACCAGGGAACAGCCATAGACATTTGGTCAGCTGGTGTGATCCTGCTTTCCCTGCTGAGTGGCAGGTACCCCTTCTTCAAAGCCAGTGACGACCTCATTGCCCTCACACAGATCATGACCATCCGAGGCTCCAGAGAAACCATCCAGGCTGCCATGACTTTCGGTAAATCAGTGGTGTGCAGCCGTGAGCTCCCCCGGCAGGACCTGAGGACCCTGTGTGAAACGCTCAGAGGAAGGAGACCATCCCCGGACGATGAGGCAACACCACATCCCCACAGAGACACTTCCACACGCCACCACCATACCCATGACTCCCCCATTTCCACTCATCCCCCTGGGGAGCCCTCTAGACAGCACCTCCCAGAGGAGGACCAGACCCTAGCAGAGCCTGAGGCCCAGGATGAGAGGGGATGGGACAGGGTGCCTGACGAGGCCTACGACCTGCTGGATAGACTGCTGGACCTGAATCCAGCCAAACGCATCACAGCTGCACAGGCACTGCAGCATCCACTTTTTACTGACCTCTGAGATTACTGTTTTCACTCATCTTTGCCAAGGAAGTGTATGAATTTCAAATGTGAAGATGTGCTATTTACTTGAATTGTTCCTTGTTACCATATAATTTATGATTGCCTTGTTAAATATAAAATTGTACTTACATTCTCAGAATAAAATGTATTAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433296 lncRNA downstream 19118 31342233 ~ 31342593 (-) True LOC118944817
TU2433297 lncRNA downstream 19594 31341989 ~ 31342117 (-) False LOC118944817
TU2433267 lncRNA downstream 75623 31246275 ~ 31286088 (-) True LOC110508945
TU2433265 lncRNA downstream 77856 31245122 ~ 31283855 (-) True G2128200
TU2433338 lncRNA upstream 3052 31371589 ~ 31371788 (-) True G2128266
TU2433342 lncRNA upstream 13220 31381757 ~ 31381985 (-) False LOC110508218
TU2433364 lncRNA upstream 16668 31385205 ~ 31385435 (-) True G2128288
TU2433345 lncRNA upstream 17488 31386025 ~ 31386241 (-) True LOC110508218
TU2433368 lncRNA upstream 26317 31394854 ~ 31395201 (-) True G2128292
XM_036966032.1 mRNA downstream 10194 31343995 ~ 31351517 (-) True LOC110508952
XM_036966031.1 mRNA downstream 10212 31343995 ~ 31351499 (-) False LOC110508952
XM_036966030.1 mRNA downstream 10440 31343995 ~ 31351271 (-) False LOC110508952
XM_036966033.1 mRNA downstream 10440 31343995 ~ 31351271 (-) False LOC110508952
XR_005040197.1 mRNA downstream 17718 31341802 ~ 31343993 (-) False LOC118944817
XM_036966921.1 mRNA upstream 5832 31374369 ~ 31397166 (-) False LOC110508218
XM_036966920.1 mRNA upstream 5832 31374369 ~ 31397685 (-) False LOC110508218
XM_021589882.2 mRNA upstream 38162 31406699 ~ 31410904 (-) False znf326
XM_036966713.1 mRNA upstream 38162 31406699 ~ 31410904 (-) True znf326
XM_021589883.2 mRNA upstream 43270 31411807 ~ 31419090 (-) True LOC110508955
TU2433312 other downstream 38347 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 38347 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 41088 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 117019 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 655166 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 343071 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 514178 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 654521 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 654521 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 693512 32062049 ~ 32165022 (-) False asip2b

Expression Profile