RNA id: XM_036966920.1


Basic Information

Item Value
RNA id XM_036966920.1
length 5565
RNA type mRNA
GC content 0.50
exon number 40
gene id LOC110508218
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31374369 ~ 31397685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCGTCGTTTTGGCGTCAAGAGGCAGCCGCAGCACATCAATCAAGCTGACAATCACCAGCTGGCTAGCTCAAAGCCTAGCTTAGTTTAGCTAGTTGTCAGATACATAAACGAACTGTCTATCGTACATTATTGAGCGGCTTGATTATAAATCAATCCTTACGATATATGAATTATAATGACTAGTTAGGCATCGTTTGAATCCTCTGAGCTGGCCTAACTCCCGGGCGGAGAGAAGATAAGAGCATTGGGAGTCAAGGCTCAAGACTAGTTAGCTAACCCACATCGAAATTGATGACTGTTACATGAACTGGCAAGATGTTGGACTCAGAAGAGTGTACTTTGTCCCTGGATAACTTGTTCTTTGAGAGGCCAGTTGTCCACAAAGTAAATCCACTTTGTCAAGAGCAGAATTCTTGGCAGTTGgaaccccctccatccctctcccagaTTCCAGCCACTCAGGACATCCAAAAAGAGGCAGAGGATCTTTCATCATTCAGTTTCTCTCAGAGGTCCAAGAAATTCATTCCCCCTTTGAAAAGAACAGTCGGCAGTGATGGTTTCATAGAAAATAACACAGATTTTAAACAAATTACCAGTGATGGAGGAAAAGAACCTGAGGGCCAGGGCGGGTGTGCTCTCTGGTCTCAGGAAGACTTCATGAACAAGTCCCAGTGTTCCACAATAGTCAGCAGAGGTCGAACTGAAACCCCACAGGAGTCTGGTCATGCGCTGGAGCAGAAACATTTTCCTCTGGACTTCAGCCAAAGCCCACCTGTACGGAGAAGTTTGTTCAAACCTCTCATTGGTCAGGTGGTGAACAGTGGTGCAGACCTGAACACCCGCCACAGCCAGACAAGACCCAGAGAGCAGCAAACCTTCAACCAGGTTTCCATGGCGACAGAGCCTCGACTGGCAAGACAGTCAGCAGCAGGCCCCAGCCCCCTCAGCGGGCTGGGTCCGGCTGCAGCCCGGGGACCCCCACCGCATACACCGGACAAGGGCACCAAGAGGGCTAACGTCCTCCCCATGACACCCCAGCCCCTTCAGATAcaagGTACTTCTGGGCCTGGGATACTCCGACCAGTCTCTGAAATCCATGCAAAATTCAGATCTGTCTTCAAAGAGTTCCCTTACTTCAACTACGTCCAATCCAAAGCCCTGGACGATGTTCTTTACACAGGAAAGAACGTTGTGGCTTGTGCTCCCACTGGTTCTGGTAAAACAGTGCTCTTTGAGTTGGCCATCATCCGCCTACTGATGGAAACCACAGAGCCCTGGAGAAACGTCAAAGCTGTTTATATGGCCCCCATCAAAGCTCTATGCAGCCAGCGCTTTGAGGACTGGAAGAAGAAATTCGAGCCTCTGGGCCTGAGCTGCAAGGAGCTGACCGGAGACACAGAGATCGACGACTTCTTTGAGATTCAGGACGCCCATATCATCATGACCACACCTGAAAAATGGGACAGCATGACCAGGAAGTGGAGGGATAACTGCCTGCTGCAGTTGGTCCGGCTTTTCCTTATTGACGAGGTGCACGTGGTGAAAGACACTACGCGTGGAGCGACACTAGAGGTGGTGGTGAGCAGGATGAAGGCGGTCCATGCCTTCCGTGCAGCAGAGAACCCCCAGGAGGACGTCTCCATGAGATTTGTGGCTGTCTCCGCCACCATCCCCAATATCAAGGATATAGCAGACTGGCTGTGTGACAACAGAGGCCCTGCTACTTGTCTGGAGATGGATGAGAGTCACAGACCTGTGAAACTGAGGAAGGTAGTGCTGGGTTTCCCCTGCAGCAGCAACCAGACTGAGTTCAAGTTCGACCTGTCACTCAACTACAAGATGGCCAACATCATCCAGACCTACTCGGACCAGAAACCAACCCTTGTTTTTTGCTCAACAAGGAAAGGAGTCCAGCAGTCAGCCGCTGTTCTGGCCAAGGATGCCAGGTTCATCATGAGGATTGAGCATAAACAACGGTTGATGAAGTATGCAAACTCTCTCCTGGACTCAAAACTCAGAGACCTGGTGACGTTTGGGGTTGGTTTCCACCACGCCGGGGTAGACGTGTCCGACAGGAAGGTGATTGAAGAGGCCTTCACCATGGGAGACCTGCCTGTACTGTTTACAACCAGTACTCTGGCGATGGGGGTGAACCTGCCAGCCCACCTGGTGGTGATCAAGTCCACCATGCACTACATCGGGGGAGCCTGCAAGGAGTACAGCGACGCCGACATGCTGCAGATGATTGGCCGAGCAGGCCGGCCACAGTTTGATACGTCAGCAACCGCAGTGATCATGACCAAGACTCACACCAAAGACAAGTACATGCAGTTCATGAATGGGGCAGAAATTATTGAGAGCAGTCTGCACACCCACCTTGTGGAGCACCTGAACGCTGAGATCGTCCTCCACACCATCTCAGACGTCAACATGGCCCTGGACTGGATCCGCTCCACCTTCCTCTACATCAGAGCACTGAAGAACCCCAAACACTATGGTTTTTCCACCGACTTGGACCGATGTGGGATTGAAGCCAAATTGCAAGAGCTCTGTCTGAAGAACCTGAACTCCCTGGCCTCCATTGGTCTGGTCTCCATGGATGAGGATGTCAACATCAAAGCTACAGAGGCAGGCAGGTTGATGGCCAGGTACTGTGTGGCATTTGACACCATGAAGCAGTTCAGCAAGGTGACTGGCACTGAGACCTTACCTGAGCTGATAGAATTGATGGCGAAGGGCAGAGAGTTCGCTGACGTGCAGCTGAGAGTGAACGAGAAGAGAACCCTGAACACGTTGAACAAGGACAAGAACAGGATCACCATCAGGTATCCCATGGAGGGGAAGATCAAAAACAATGAGATGAAGGTGAACTGCTTGATTCAGGCCCAGTTTGGCTCCATTCCAATTCAAGAGTTTGGACTCACACAAGACACCGGTAGAATCTTCCGGAATGGAGTCCGAATCAGCAGATGTTTGGCAGAGTTTCTAAACCAGCGCTCCAAGACAGGCTTCTCTGCTCTGCTCAACTCCCTGATACTGGCCAAGTGCTTCAGTGCCAAGCTGTGGGAGAACTCTCCTTATGTCTCAAAGCAGCTGGAGAAAATAGGGTTGACTCTTTCAGCCGCCATGGTGAACGCTGGGCTCACCACCTTCAGTAAGATAGAGAAGACCAACGCCAGGGAACTGGAGCTGATCGTCAACAGACATCCTCCATTCGGAAACCAAATCAGAGAGGCTATCATCAATCTACCCAAGTATGAAGTTTGTTTGGAGCAGCTTCCAAGATACAACGTCGCCACCGCAGAGATTGTCGTGACTGTGAACGTGAAGAACCACGAACAGCTGCTGTCAAAGAGAACTGCTCCTGACCACCACTATGTCACCATGATCATCGGGGACTGTGACAACAACGTGGTCTTCCTGCAAAAACTCACAGACTTGATGCTGTTAAAGTCGGGAAGCTGGTCAAAGAAGATCGAAGTGGCGAAAGCCTCCAAAGGAGAGGAGATCAATGTGAATCTGGTCAGCTCAGAATACGTGGGGTTGGACATTCAACAGAAGTTTAGTCCCTTCTTCTCTGGACCGAAGAGGTACGGAGCTGAATCACTCGCACCTGAGCAACATAACACCGTGCAGCAAGCACAGGCTAATGCTCAGAGATCACAGGGTGCAACACAGAGAACACAGCCAACAGCTCAGCAAACACAGAAGAGAAACTCCACATCCACATGTGCTACAGAAAAGGATTCCTCACAATCAGATCCAGGCAAAAGACAATGTAACCACTTATGCAAAAACAAGGATCAATGTGGCCACGACTGCTGTAAAAATGGAGGGCCGGGGGTTCTGAAAAGGCAGATGAATCAGCATTCGAGTTTCACCTCCTACCTCCAAGACCTGAAGACTAGGAGTGACACACTGACGGAGACACCAGTCAAACGCCTCAAGATGAGAATGAATGGCGGGATGGGAGCTGCCAACATGCAACAGTTCTCTTATTCACCTAAGCCAATCCTACCTGCTTCTTCTAGGTATGAAGGTAACCAGTATGGCGCTTTAGCAAGACCACAGAGTGTAGATTCAGCTGAGGACTTTGCAACACACCAAGAGATGGCTTATGTTGTGACCTATGGCCATGAGTATAATGACTACCTGGAAGACATATCTCAGACAACGGGAGATTTGAAACCACCACCTGTTCAACTTCAGATCCTTACGGAGTCACAAAgcACTTCGATATGGAGGAAGCCCAATGCCTACGATGGAAGATCCCTCAGCCACAGCACCCCCCAAAGCACCCCGCAAAGCCAGAGCAGGAGTTACCCTCAGAGCCATAGCACCCCCCAGAGCCAGAGCAGGGGTTACCCTCAGAGCCACAGCACCCCCCAGAGCCAGAGCAGGAGTTACCCTCAGAGCCACAGCACCCCCCAGAGCCAGAGCAGGGGTTACCCTCAGAGTCACAGCACACCCCAAAGCAGGGGTTACTCCCAAAGTATCTCTCAGAGCCAGAGCAGATGTTACCCACAGAGTCACTGCACCCCCCAAAGCAGGAGTTACCCTCAGAGCCACAGCACCCCCCAGAGCCAGTGCAGGAGTTACCCTCTGAGTCAAAGCACCGCCCAAACCCAGAGCAGGGGTAACAGTACCCCCCAAAACCAGAGCAGGTCTTTTTCTCAGAGTTCCATTGTAGACTTGACCGACGACAGTGGTTTCTTCTCATCGTCAATCACCCCCAGCGTGACCTTTGACCTGGGAGACGAGTGGGACGATTTTGACGATGACAACTTGGTGCACGCCAACGAGAAGCCATGCACCACTGTTGCTAAAACTAAAGGGGTGGACCTGGACTGTGATAGGCCAAAAGGAAACTCCACACCACTACCATCCATTTCCTTACTGCCCAAACCCCGCTTCACTACATCCAATTCCCCACTCAGGTCGACCTCCCCAGTTGTTTCTCAGATACCAGTTACTACTCTCCCAGTCAGACCACACAACTCCCAGGCTACTGCTAGCTGGAGCCACTCTGACAACAAGGCCACAAGGACATTCAGTGAACCCCCCATGAAAGCACCACCCCCCTTCCCAAAACAGACTGACACTAGCTTTCCCCCCCTGGGAGAACGGTTTGATTTCTTCTCAAAGACGACTATCCCAAACAATGACAATGTGACTGGCAAAAGGCTCCAGGGAGAGGATTACAGCAAGGAAGTGGAGGCATTCATGGGGATATTTGATGGACTATTTTAGTAGTGTTTGTAGTTGTATGGACTATTTCCATGATAATGTTTCATGGTGATTTGTCATGTTATTGTGTATGTAATTTTGTTATACTGTTATTTATACTGTTTGTTGTTTGGGATTCACTGTTAGATTTACTGTTGGTCCTATTTGAAAATGTTTATCTAGGAGTATGAACTTTCAATCTTCTTTAGCAGGATTccaaaaatgtaatatttctgtGTACTTTATTAAATGAACACAATATTTATTCAGAGGAAGTCTGAGGGTgtagagagcaatagtaatggtGTCATGGACCATATAATGGTGTTTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433338 lncRNA downstream 2581 31371589 ~ 31371788 (-) True G2128266
TU2433296 lncRNA downstream 31776 31342233 ~ 31342593 (-) True LOC118944817
TU2433297 lncRNA downstream 32252 31341989 ~ 31342117 (-) False LOC118944817
TU2433267 lncRNA downstream 88281 31246275 ~ 31286088 (-) True LOC110508945
TU2433383 lncRNA upstream 70635 31468320 ~ 31468556 (-) True G2128307
TU2433362 lncRNA upstream 93509 31491194 ~ 31494425 (-) True G2128286
TU2433402 lncRNA upstream 104592 31502277 ~ 31502922 (-) True G2128326
TU2433354 lncRNA upstream 106379 31504064 ~ 31504876 (-) True G2128278
TU2433407 lncRNA upstream 114099 31511784 ~ 31512006 (-) True G2128330
XM_021589878.2 mRNA downstream 4852 31361711 ~ 31369517 (-) False cdc7
XM_021589880.2 mRNA downstream 4852 31361711 ~ 31369517 (-) True cdc7
XM_036966027.1 mRNA downstream 4855 31361711 ~ 31369514 (-) False cdc7
XM_021589879.2 mRNA downstream 5832 31361711 ~ 31368537 (-) False cdc7
XM_036966029.1 mRNA downstream 5838 31361711 ~ 31368531 (-) False cdc7
XM_021589882.2 mRNA upstream 9014 31406699 ~ 31410904 (-) False znf326
XM_036966713.1 mRNA upstream 9014 31406699 ~ 31410904 (-) True znf326
XM_021589883.2 mRNA upstream 14122 31411807 ~ 31419090 (-) True LOC110508955
XM_036966165.1 mRNA upstream 35437 31433122 ~ 31466445 (-) False LOC110508219
XM_036966166.1 mRNA upstream 35437 31433122 ~ 31466446 (-) False LOC110508219
TU2433312 other downstream 51005 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 51005 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 53746 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 129677 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 667824 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 313923 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 485030 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 625373 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 625373 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 664364 32062049 ~ 32165022 (-) False asip2b

Expression Profile