RNA id: XM_021589882.2


Basic Information

Item Value
RNA id XM_021589882.2
length 1832
RNA type mRNA
GC content 0.43
exon number 11
gene id znf326
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31406699 ~ 31410904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccctgcAGGTAAAAATAGAAAATTGTGTTCTGTAGCTTATTTGTAGTATGATGACCGCTTGCTAGCTTTATAGGTAGCAGCAGTCACGTAAACGAGACAGTAATTTAACAAAACATATGAACGTTCGTTAGGTATTAATAGTGAAATACCTGAGGACGAGAATGAGTCGACGAAATAATCACTCTTTTTCTGATTATGGACCGCCGAATACATACAATGCTCATGGAAGCGTCACACCAACCCAGGGAAGTGCAGGAACAACCCACCACACAAGACACTCGACCGTAAACCCAGGATCCTACAACTCTCAGCAAACAAGCAACTCAGAAAAAGCCGAGCTCTACGACCCATATGATCCTAATCCTGGCTCATCATCAGACTCTGAAGTGGAGCCTTCCAAAGGCAGGGAAGACCATCGCAGACACAGAGTTAGTGGAGGGAGCAGCCGCCTGAGTAGTGGATATCAAGGCTCTGCTTCAGTAGCTGGGCATCGTGATGGCTTCAACTGGGATTTGTTATCCTCTCGGCCCAGTACCAGACATGAGCAGTCCAGCCATGATCACTCAGAACGGCCGTTGCCCACGACAGAAACCCCACTATTCCCCCTCAATGCATATTGGGAGCAGGGGGAAAATGGGAGAGAAATGTCCACAACCACAGTAGCTGGCAAAGAGagaagaaatCCACCAGGGTTATCCCGGTCCCACTGGGATACCAACCCCATTCATGGCCAATCAGAATCTAGTGGAAGAGGAGGGGACCTAAGCAAGTCACGCTCAGAGGTCACAAAGAAGAGAAGCAGAAGCCCAAATGAGGACATATCGAGTGATTTTTTCACCTGTGACATGTGTAACTTGGATTTCCATAAAGCGAGCACCCTTGAGGTGCATCTGAAGTGCAATAGTCACTGGGAGACCCTGGAGCACATCCAAAATCAAAACAACTACGACGACACGGCAATCGCCTTTTTGCATGAGGCCATGTTAACCAAAGTCCGGCAAGGTGATAGACTGCAGATGAACAGACAAAGCCTTAGAGCATTGCAGGACAAGGATTACATGACAAAGTTAGATATTTTCCACTGTGCTCCTTGCCAAGTCTACGTCTCCGTACATCCATCGTCACTGCAGGATCACCTGAGCTCCAAAGACCACCTGAGGAACAAAATGGAATTTAGAACCAAACAGTTGCGGGAAAGTGTGAACTTTGCGAAGGCCACCATGAAACGAATGAATACTGAGTATGCAAGCTTCTGTGAGGGCAAGGATCCTTTTGAGCATTCATCATGAGGGCCATGAAGAATAGACAAAACAGTTGATGTGAACTGCTCGCTACTGGCTGTGGACAGCCAACAACCACCAATCAAAATCAACTAGACAAAGACCAAATGGACATAGTCTGTGCCCTTAGTGTTGATGTTCAGTCGTATGTATCTCTAAACTAATACAGGATAATCTTAACTAATACAGAATAGCGTTTTTTCCTTGAGTGTGGAGCATCCATTAGCTAGATATCACATAGTTGAGAACTTGTAGTCATTTTGTGTTTGATGTAGACATTTTTCACGTAAGAACATTTTGGACCTTTTTATTTTTTCAGTTGGTAATTGATTTAATTTCAATAGATATTGAAGCACATTTTGCAATGTTTTTCCCACAATTATCTTTTTCCATTAGAACACCTGCTTTGATTCATTGAGATTTAAGGATAGAAATACTGTAATGTTTGGTTTCCTTGAAGAAATATGGTCTTTACAGGCTTTCCAACTTTGTAATTTCTTACAATCATTTAAAAATAATACCCAAACAATAAATGTTTTAAAGACAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433368 lncRNA downstream 11498 31394854 ~ 31395201 (-) True G2128292
TU2433345 lncRNA downstream 20458 31386025 ~ 31386241 (-) True LOC110508218
TU2433364 lncRNA downstream 21264 31385205 ~ 31385435 (-) True G2128288
TU2433342 lncRNA downstream 24714 31381757 ~ 31381985 (-) False LOC110508218
TU2433338 lncRNA downstream 34911 31371589 ~ 31371788 (-) True G2128266
TU2433383 lncRNA upstream 57416 31468320 ~ 31468556 (-) True G2128307
TU2433362 lncRNA upstream 80290 31491194 ~ 31494425 (-) True G2128286
TU2433402 lncRNA upstream 91373 31502277 ~ 31502922 (-) True G2128326
TU2433354 lncRNA upstream 93160 31504064 ~ 31504876 (-) True G2128278
TU2433407 lncRNA upstream 100880 31511784 ~ 31512006 (-) True G2128330
XM_036966920.1 mRNA downstream 9014 31374369 ~ 31397685 (-) False LOC110508218
XM_036966921.1 mRNA downstream 9533 31374369 ~ 31397166 (-) False LOC110508218
XM_021589878.2 mRNA downstream 37182 31361711 ~ 31369517 (-) False cdc7
XM_021589880.2 mRNA downstream 37182 31361711 ~ 31369517 (-) True cdc7
XM_036966027.1 mRNA downstream 37185 31361711 ~ 31369514 (-) False cdc7
XM_021589883.2 mRNA upstream 903 31411807 ~ 31419090 (-) True LOC110508955
XM_036966165.1 mRNA upstream 22218 31433122 ~ 31466445 (-) False LOC110508219
XM_036966166.1 mRNA upstream 22218 31433122 ~ 31466446 (-) False LOC110508219
XM_036966167.1 mRNA upstream 31504 31442408 ~ 31466447 (-) True LOC110508219
XM_021589886.2 mRNA upstream 60390 31471294 ~ 31479415 (-) False LOC110508958
TU2433312 other downstream 83335 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 83335 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 86076 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 162007 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 700154 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 300704 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 471811 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 612154 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 612154 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 651145 32062049 ~ 32165022 (-) False asip2b

Expression Profile