RNA id: TCONS_00055447


Basic Information

Item Value
RNA id TCONS_00055447
length 748
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_028583
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12033873 ~ 12040345 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCACAACTTGTCATCATCGCATGACTAAACGTGTTTCTTTGAATTAGAGAAGTGGATTAACCTGCAAATATGGCCAAAGGTCAATGCACCAATCAGGAGCTCTCAAATCTGCTGAATGAACTGTGGAAGCTGGACGTGAACCGAATGAAACCTGGACGAGACTATAAAATCGACCTACAGGGCAAGGCTGGCTTTGTGTCTGAGGGCAGCAATAGTGCCAGGGATTGCGCTAGAGCTCCTCTCTTTTCTCATGTCAATGAAAACAAGCTCAAAAGCATTGATACCTACGCCTACTTTATCACTCTGCTGGATAATTATGAGACGTCAACCGGAGTCGCTGAGCAGGTGACAAAAGAGGAGCTTCAGGAGAACAGCCTTTTTCTGGATGCTGTTCTGAAGACCGAGGTCATGAAGGCTTTGTTTATGCAGTGTGCCCACAGGTATTTAGTAAGCAAAGGTCGCGCCCAATCGGATATGGCTCAGTTTAAGAGGCAGCTCTATGACATCTGGTTCAAGCTCTATCGCAGAGACAAAAGTGGAGCTGAGGATTCCTGTGGATTTGAGCATGTGTTTGTCGGCGAAACCAAGCATGGTAGAGAGATCATGGGCCTCCACAACTGGATCCAGTTTTACAATCTGGAAAAGCAAAATATCGTGGACTACAAAGGATATAAGGCCAGAGATAAAAAGGACACGCCAGATGAGGATGATCACGTCTTAAATCTGCAGTTTAGCTGGAATGGTCTG

Function

GO:

id name namespace
GO:0004521 endoribonuclease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3658 Predicted to enable endoribonuclease activity. Is expressed in several structures, including EVL; mucus secreting cell; nervous system; periderm; and vasculature.

Ensembl:

ensembl_id ENSDART00000150583

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055440 lncRNA downstream 231436 11787351 ~ 11803397 (-) False XLOC_028580
TCONS_00055441 lncRNA downstream 234422 11788766 ~ 11800411 (-) True XLOC_028580
TCONS_00058118 lncRNA downstream 245252 11758282 ~ 11789581 (-) False XLOC_028580
TCONS_00058117 lncRNA downstream 245252 11758282 ~ 11789581 (-) False XLOC_028580
TCONS_00058111 lncRNA downstream 254086 11758282 ~ 11780747 (-) False XLOC_028580
TCONS_00057328 lncRNA upstream 15613 12055935 ~ 12056427 (-) True XLOC_028584
TCONS_00057329 lncRNA upstream 17486 12057808 ~ 12058631 (-) True XLOC_028585
TCONS_00058119 lncRNA upstream 19662 12059984 ~ 12061389 (-) False XLOC_028586
TCONS_00057330 lncRNA upstream 19871 12060193 ~ 12060718 (-) True XLOC_028586
TCONS_00055450 lncRNA upstream 38010 12078332 ~ 12102025 (-) True XLOC_028587
TCONS_00055444 mRNA downstream 27429 11813778 ~ 12007404 (-) True XLOC_028582
TCONS_00055442 mRNA downstream 224034 11804675 ~ 11810799 (-) False XLOC_028581
TCONS_00055443 mRNA downstream 224468 11809137 ~ 11810365 (-) True XLOC_028581
TCONS_00055436 mRNA downstream 283796 11732156 ~ 11751037 (-) False XLOC_028577
TCONS_00055448 mRNA upstream 34454 12074776 ~ 12102025 (-) False XLOC_028587
TCONS_00055449 mRNA upstream 34718 12075040 ~ 12102036 (-) False XLOC_028587
TCONS_00055451 mRNA upstream 61945 12102267 ~ 12106039 (-) False XLOC_028588
TCONS_00055452 mRNA upstream 63510 12103832 ~ 12104421 (-) True XLOC_028588
TCONS_00055456 mRNA upstream 203376 12243698 ~ 12286067 (-) False XLOC_028592
TCONS_00055433 other downstream 426550 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055432 other downstream 427978 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055389 other downstream 1373156 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055328 other downstream 3446925 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 3893367 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055457 other upstream 234792 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 373097 12413419 ~ 12433016 (-) True XLOC_028596
TCONS_00055465 other upstream 555358 12595680 ~ 12595804 (-) True XLOC_028597
TCONS_00055473 other upstream 737387 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055491 other upstream 866659 12906981 ~ 12914170 (-) True XLOC_028606

Expression Profile

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