RNA id: XM_021589887.2


Basic Information

Item Value
RNA id XM_021589887.2
length 1350
RNA type mRNA
GC content 0.48
exon number 5
gene id cldn18
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31505514 ~ 31508287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTTGTCAGGGTATATAGACATTACACATGCTCGCCATGCCGTGCTGTTATGGGGTTGTCTTAGCTAAAGTGATTCAGACCTCTTTATTTACTCCTGCCCAACAACGGTTGGCTCAGATGAAAGGTACCTGGTGCACCTATCTCCACTGTGCCCACATCTCTGATGAGAAACCAAGCAGGAGCGTGCACGTGAGCGTGAACGTGCACATGGTCAACTGCCCACGAAACCTCAGCAAccccaccctactccacattAGTTCCACCACCGCCCTTTcgccttccccctctctcacccttctaCATCcctttcctacacacacacacatttcactcACACTTCACACTCAGGAAAGTATGGCCACTGCACTCCAGACGGGTGGATTCGTCCTGGGCCTGCTCGGCGGGGCTGCCATCATCGCCGCCACGGGGATGAACAACTGGAGCGTCAAGGATCGTCAGGGGGACGTGGTGACCTCGGTGTACACCTATAAGGGCCTGTGGCAGAACTGTGAGGTGGGCACCTCAGGCTTCACTGAGTGCCGGCCCCTCTACGGCCTCCTGGGCTTCTCAGGTACCTTTCAGGCAGTGAGAGCACTGATGATTGTGGGCATTGTTCTGGGTGTAATAGGGGCCATGATAGCCCTGTTCTCCCTCAAGTGCCTTAAAATGGGCAGCATGGAAGATTCCTCCAAAGCCAAGATGACCCTTACAGCGGGGGTCATGTTCATCATTGCAGGCATTTGTGCTATTGCTGGAGCTTCAATCTATGCTAACCAAATTGTGGCTAGTTTCATGATGACCACCTACAACCCCAATTATGGAGGAGGGATGGGACAGGGCATAGAGAATGGAGGAAGTATGATGCCGAGGTACACGTTTGGCCCTGCCCTCTTTGTTGCCTGGATAGGTGCAGCTTTGCTCTTATTGGGCGGGATTCTGAAGTGTGTTGCCTTCAGGGGACTACAGCCAGACAAGTCAACAAACTACACAGGAGTTGCTTACAAAGCCTCCCAAGCCCAGAACAGGCCCGTCTATGATGACCACCATGCAGTGGATGGGAAGAGAGACAACCAAAAATATGTATAATTTCTGTTATATTCTGCATCAATAAATTTGATTCTACATTAAGAAGCATGTATTTAAATGTTGCTTCGGAATATAGTGCTTCATTTTCATATACGCTTCCTAGAGTTTCAATACATTTTACTGCATGTTATTTAAAAATGTGTATTCTGTTGCGGTTGATAGTGGGCTCCATTTTATACTGCCAGTAACTGTTTTAGTTTCATGTGGTCTTGGGTAATGTGTTATTGCTATTTTGTCAATAAACCATTCATGTAAAGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433354 lncRNA downstream 638 31504064 ~ 31504876 (-) True G2128278
TU2433402 lncRNA downstream 2592 31502277 ~ 31502922 (-) True G2128326
TU2433362 lncRNA downstream 11089 31491194 ~ 31494425 (-) True G2128286
TU2433383 lncRNA downstream 36958 31468320 ~ 31468556 (-) True G2128307
TU2433368 lncRNA downstream 110313 31394854 ~ 31395201 (-) True G2128292
TU2433407 lncRNA upstream 3497 31511784 ~ 31512006 (-) True G2128330
TU2433413 lncRNA upstream 15249 31523536 ~ 31523871 (-) True G2128336
TU2433418 lncRNA upstream 33004 31541291 ~ 31541507 (-) True G2128341
TU2433421 lncRNA upstream 34693 31542980 ~ 31544508 (-) True stk25b
TU2433426 lncRNA upstream 43475 31551762 ~ 31554729 (-) True G2128345
XM_021589885.2 mRNA downstream 14676 31471294 ~ 31490838 (-) True LOC110508958
XM_021589886.2 mRNA downstream 26099 31471294 ~ 31479415 (-) False LOC110508958
XM_036966167.1 mRNA downstream 39067 31442408 ~ 31466447 (-) True LOC110508219
XM_036966166.1 mRNA downstream 39068 31433122 ~ 31466446 (-) False LOC110508219
XM_036966165.1 mRNA downstream 39069 31433122 ~ 31466445 (-) False LOC110508219
XM_021589889.2 mRNA upstream 119 31508406 ~ 31511223 (-) True LOC110508960
trnap-ugg-71 mRNA upstream 13214 31521501 ~ 31521572 (-) True trnap-ugg-71
XM_036966526.1 mRNA upstream 34471 31542758 ~ 31560379 (-) False stk25b
XM_036966527.1 mRNA upstream 34471 31542758 ~ 31560379 (-) False stk25b
trnav-aac-156 mRNA upstream 52439 31560726 ~ 31560798 (-) True trnav-aac-156
TU2433312 other downstream 182150 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 182150 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 184891 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 260822 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 798969 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 203321 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 374428 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 514771 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 514771 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 553762 32062049 ~ 32165022 (-) False asip2b

Expression Profile